Gvermi12769.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12769.t1
Unique Name	Gvermi12769.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	647

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1460231..1462171 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708801.1
Preferred name	lztr1
PFAMs	BTB,F-box-like,Jacalin,Kelch_1,Kelch_2,Kelch_3,Kelch_4,Kelch_5,PAS_9
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12115,ko:K12116,ko:K12117
KEGG Pathway	ko04712,map04712
GOs	GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
Evalue	3.76e-124
EggNOG OGs	2CMFB@1\|root,2QQ74@2759\|Eukaryota
Description	Galactose oxidase, central domain
COG category	S
BRITE	ko00000,ko00001,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12769	Gvermi12769	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1460231..1462171 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12769.t1.stop1	Gvermi12769.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1460231..1460233 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12769.t1.CDS1	Gvermi12769.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1460231..1462171 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12769.t1.exon1	Gvermi12769.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1460231..1462171 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12769.t1.start1	Gvermi12769.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1462169..1462171 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12769.t1	Gvermi12769.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1460231..1462171 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1460231..1462171-
coding sequence from alignment at ScGOVlb_425:1460231..1462171-

mRNA sequence

>Gvermi12769.t1 ID=Gvermi12769.t1|Name=Gvermi12769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=647bp
MHRHSFPTLRSTSNFAADPSRRSLPTSPDTIPEWVINESMDDRVPCQRAG
HSLASFEDKIYLFGGCCSYYPNAEDMHDSNEVAHNTGDLLHFNTLHEYST
ETNKWRQLHSGGEGRLPSRLIPKERRHASLVVYGRSLYLYGGFDRGDHVL
SDLWEFHLDQKQWLLVSRNPDLCNYNMREPLSVFSTVPIPVARAEHTAVV
YKHLMVVFGGYDGKKKLSDTFVYDFVTRRWSSPFAARERAPSRRCKHSAV
LYNGKMFIVGGFQYKGGENYALTDMHALDLESFTWENCRIDDSAPQALQG
HKAVVCGDTMYILGGKVRPRNVRNSMPAPTLNQTSPVGIIPSNMDISVTH
VNLASLMPRDSDGSIQIPSEYMPDETRSSGLSHVVFTYDFGTMRWSVLRT
IGMPPTPRQLHAVVPVQTNDFRCSIFVFGGTDRSKQRYYNDLVELRGILS
PTKYPDKCETCTSTRSLLNNEMFSDVKFVIEGKKIYAHKCILYARSEYFR
GMFDSSMREASASDIPIPDVTYEVFYGVMNYLYAGEVRVRDGQVAVELLK
AADMFRLEGLKNRCAEKLERGVTPLNAAFICQVADRHNSPNLKNYCIAYI
VENFKHVIKTESFVDLMTQDAGGLGREILIAFSDSTSYDGLKRARK*

spliced messenger RNA

>Gvermi12769.t1 ID=Gvermi12769.t1|Name=Gvermi12769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1941bp|location=Sequence derived from alignment at ScGOVlb_425:1460231..1462171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCCACAGCTTCCCAACCCTCCGCTCCACCTCGAACTTCGCCGC
TGATCCTTCACGGAGATCCTTGCCCACTTCGCCCGACACTATTCCCGAAT
GGGTTATCAACGAGTCCATGGATGATCGAGTGCCGTGTCAGCGAGCCGGC
CACTCCCTTGCATCGTTTGAAGACAAGATTTACTTATTCGGAGGCTGTTG
TAGCTACTACCCCAATGCAGAAGACATGCACGACTCAAACGAAGTAGCCC
ACAACACAGGAGATCTTTTGCACTTCAATACCCTTCATGAGTACTCAACG
GAGACGAACAAATGGCGTCAGCTGCACTCCGGTGGAGAAGGTCGACTCCC
TTCCAGACTCATTCCCAAAGAACGTCGTCATGCGTCCCTCGTCGTCTATG
GTCGTTCTCTATATCTGTACGGTGGATTTGATCGTGGGGATCACGTGCTG
TCCGATCTTTGGGAGTTTCACCTTGATCAAAAGCAATGGCTTCTGGTGTC
CAGAAATCCTGACTTGTGTAACTACAACATGCGTGAGCCACTATCTGTCT
TTAGTACAGTGCCTATCCCCGTTGCGCGAGCGGAACACACTGCAGTCGTC
TATAAGCACCTAATGGTAGTATTTGGCGGCTATGACGGCAAAAAGAAGCT
CAGTGATACCTTCGTGTATGACTTTGTCACTCGAAGGTGGTCCTCCCCGT
TCGCGGCGCGTGAGAGGGCGCCGAGTCGACGATGTAAACACTCCGCAGTT
CTGTACAATGGGAAAATGTTTATTGTCGGAGGTTTTCAGTACAAGGGCGG
CGAGAACTATGCGCTCACTGACATGCACGCCCTTGACCTGGAATCTTTTA
CGTGGGAAAACTGTAGAATTGACGACTCGGCGCCTCAGGCACTTCAGGGA
CACAAGGCCGTTGTCTGTGGGGACACTATGTATATTCTTGGAGGGAAAGT
ACGGCCGCGAAACGTTAGAAATAGCATGCCTGCTCCAACGCTAAATCAAA
CATCTCCGGTCGGCATTATTCCCTCGAACATGGACATCAGCGTCACACAT
GTGAACCTTGCCTCGCTCATGCCTCGTGACAGTGATGGATCAATTCAGAT
CCCGTCTGAATATATGCCGGACGAAACGCGAAGCTCTGGCCTCAGCCATG
TCGTGTTTACCTACGATTTTGGAACTATGCGGTGGTCAGTACTTCGTACG
ATTGGAATGCCGCCGACCCCGAGACAATTGCACGCCGTCGTCCCTGTCCA
AACAAATGACTTCCGTTGTTCGATCTTTGTCTTTGGTGGCACGGATAGAT
CGAAGCAGAGGTATTATAATGATCTCGTTGAACTTCGAGGAATTCTATCA
CCCACCAAATATCCCGACAAATGCGAGACGTGTACGTCTACAAGATCTTT
GTTGAACAACGAGATGTTTTCTGATGTCAAATTCGTCATCGAGGGTAAGA
AAATCTACGCTCACAAGTGTATTTTGTACGCCCGGTCAGAGTACTTTAGG
GGTATGTTTGATTCCAGTATGCGGGAAGCTTCTGCGTCTGATATCCCGAT
ACCAGATGTAACGTACGAAGTATTCTACGGCGTTATGAACTACTTGTATG
CTGGAGAAGTTCGGGTACGCGATGGGCAAGTAGCGGTCGAGCTTCTCAAG
GCAGCAGATATGTTCAGATTAGAAGGATTGAAGAATAGGTGTGCTGAGAA
GCTGGAGCGAGGCGTAACACCACTCAACGCAGCGTTCATCTGTCAGGTTG
CAGACCGGCACAACTCTCCGAACTTGAAGAATTACTGTATAGCATACATC
GTTGAGAACTTTAAACACGTGATCAAGACGGAATCCTTCGTAGACCTTAT
GACGCAGGATGCTGGAGGTCTGGGCCGGGAAATATTGATAGCGTTCTCTG
ATAGCACATCTTACGATGGATTGAAACGTGCTCGAAAATAG

protein sequence of Gvermi12769.t1

>Gvermi12769.t1 ID=Gvermi12769.t1|Name=Gvermi12769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=647bp
MHRHSFPTLRSTSNFAADPSRRSLPTSPDTIPEWVINESMDDRVPCQRAG
HSLASFEDKIYLFGGCCSYYPNAEDMHDSNEVAHNTGDLLHFNTLHEYST
ETNKWRQLHSGGEGRLPSRLIPKERRHASLVVYGRSLYLYGGFDRGDHVL
SDLWEFHLDQKQWLLVSRNPDLCNYNMREPLSVFSTVPIPVARAEHTAVV
YKHLMVVFGGYDGKKKLSDTFVYDFVTRRWSSPFAARERAPSRRCKHSAV
LYNGKMFIVGGFQYKGGENYALTDMHALDLESFTWENCRIDDSAPQALQG
HKAVVCGDTMYILGGKVRPRNVRNSMPAPTLNQTSPVGIIPSNMDISVTH
VNLASLMPRDSDGSIQIPSEYMPDETRSSGLSHVVFTYDFGTMRWSVLRT
IGMPPTPRQLHAVVPVQTNDFRCSIFVFGGTDRSKQRYYNDLVELRGILS
PTKYPDKCETCTSTRSLLNNEMFSDVKFVIEGKKIYAHKCILYARSEYFR
GMFDSSMREASASDIPIPDVTYEVFYGVMNYLYAGEVRVRDGQVAVELLK
AADMFRLEGLKNRCAEKLERGVTPLNAAFICQVADRHNSPNLKNYCIAYI
VENFKHVIKTESFVDLMTQDAGGLGREILIAFSDSTSYDGLKRARK*

mRNA from alignment at ScGOVlb_425:1460231..1462171-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12769.t1 ID=Gvermi12769.t1|Name=Gvermi12769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1941bp|location=Sequence derived from alignment at ScGOVlb_425:1460231..1462171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCGCCACAGCTTCCCAACCCTCCGCTCCACCTCGAACTTCGCCGC
TGATCCTTCACGGAGATCCTTGCCCACTTCGCCCGACACTATTCCCGAAT
GGGTTATCAACGAGTCCATGGATGATCGAGTGCCGTGTCAGCGAGCCGGC
CACTCCCTTGCATCGTTTGAAGACAAGATTTACTTATTCGGAGGCTGTTG
TAGCTACTACCCCAATGCAGAAGACATGCACGACTCAAACGAAGTAGCCC
ACAACACAGGAGATCTTTTGCACTTCAATACCCTTCATGAGTACTCAACG
GAGACGAACAAATGGCGTCAGCTGCACTCCGGTGGAGAAGGTCGACTCCC
TTCCAGACTCATTCCCAAAGAACGTCGTCATGCGTCCCTCGTCGTCTATG
GTCGTTCTCTATATCTGTACGGTGGATTTGATCGTGGGGATCACGTGCTG
TCCGATCTTTGGGAGTTTCACCTTGATCAAAAGCAATGGCTTCTGGTGTC
CAGAAATCCTGACTTGTGTAACTACAACATGCGTGAGCCACTATCTGTCT
TTAGTACAGTGCCTATCCCCGTTGCGCGAGCGGAACACACTGCAGTCGTC
TATAAGCACCTAATGGTAGTATTTGGCGGCTATGACGGCAAAAAGAAGCT
CAGTGATACCTTCGTGTATGACTTTGTCACTCGAAGGTGGTCCTCCCCGT
TCGCGGCGCGTGAGAGGGCGCCGAGTCGACGATGTAAACACTCCGCAGTT
CTGTACAATGGGAAAATGTTTATTGTCGGAGGTTTTCAGTACAAGGGCGG
CGAGAACTATGCGCTCACTGACATGCACGCCCTTGACCTGGAATCTTTTA
CGTGGGAAAACTGTAGAATTGACGACTCGGCGCCTCAGGCACTTCAGGGA
CACAAGGCCGTTGTCTGTGGGGACACTATGTATATTCTTGGAGGGAAAGT
ACGGCCGCGAAACGTTAGAAATAGCATGCCTGCTCCAACGCTAAATCAAA
CATCTCCGGTCGGCATTATTCCCTCGAACATGGACATCAGCGTCACACAT
GTGAACCTTGCCTCGCTCATGCCTCGTGACAGTGATGGATCAATTCAGAT
CCCGTCTGAATATATGCCGGACGAAACGCGAAGCTCTGGCCTCAGCCATG
TCGTGTTTACCTACGATTTTGGAACTATGCGGTGGTCAGTACTTCGTACG
ATTGGAATGCCGCCGACCCCGAGACAATTGCACGCCGTCGTCCCTGTCCA
AACAAATGACTTCCGTTGTTCGATCTTTGTCTTTGGTGGCACGGATAGAT
CGAAGCAGAGGTATTATAATGATCTCGTTGAACTTCGAGGAATTCTATCA
CCCACCAAATATCCCGACAAATGCGAGACGTGTACGTCTACAAGATCTTT
GTTGAACAACGAGATGTTTTCTGATGTCAAATTCGTCATCGAGGGTAAGA
AAATCTACGCTCACAAGTGTATTTTGTACGCCCGGTCAGAGTACTTTAGG
GGTATGTTTGATTCCAGTATGCGGGAAGCTTCTGCGTCTGATATCCCGAT
ACCAGATGTAACGTACGAAGTATTCTACGGCGTTATGAACTACTTGTATG
CTGGAGAAGTTCGGGTACGCGATGGGCAAGTAGCGGTCGAGCTTCTCAAG
GCAGCAGATATGTTCAGATTAGAAGGATTGAAGAATAGGTGTGCTGAGAA
GCTGGAGCGAGGCGTAACACCACTCAACGCAGCGTTCATCTGTCAGGTTG
CAGACCGGCACAACTCTCCGAACTTGAAGAATTACTGTATAGCATACATC
GTTGAGAACTTTAAACACGTGATCAAGACGGAATCCTTCGTAGACCTTAT
GACGCAGGATGCTGGAGGTCTGGGCCGGGAAATATTGATAGCGTTCTCTG
ATAGCACATCTTACGATGGATTGAAACGTGCTCGAAAATAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1460231..1462171-

>Gvermi12769.t1 ID=Gvermi12769.t1|Name=Gvermi12769.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1941bp|location=Sequence derived from alignment at ScGOVlb_425:1460231..1462171- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCGCCACAGCTTCCCAACCCTCCGCTCCACCTCGAACTTCGCCGC
TGATCCTTCACGGAGATCCTTGCCCACTTCGCCCGACACTATTCCCGAAT
GGGTTATCAACGAGTCCATGGATGATCGAGTGCCGTGTCAGCGAGCCGGC
CACTCCCTTGCATCGTTTGAAGACAAGATTTACTTATTCGGAGGCTGTTG
TAGCTACTACCCCAATGCAGAAGACATGCACGACTCAAACGAAGTAGCCC
ACAACACAGGAGATCTTTTGCACTTCAATACCCTTCATGAGTACTCAACG
GAGACGAACAAATGGCGTCAGCTGCACTCCGGTGGAGAAGGTCGACTCCC
TTCCAGACTCATTCCCAAAGAACGTCGTCATGCGTCCCTCGTCGTCTATG
GTCGTTCTCTATATCTGTACGGTGGATTTGATCGTGGGGATCACGTGCTG
TCCGATCTTTGGGAGTTTCACCTTGATCAAAAGCAATGGCTTCTGGTGTC
CAGAAATCCTGACTTGTGTAACTACAACATGCGTGAGCCACTATCTGTCT
TTAGTACAGTGCCTATCCCCGTTGCGCGAGCGGAACACACTGCAGTCGTC
TATAAGCACCTAATGGTAGTATTTGGCGGCTATGACGGCAAAAAGAAGCT
CAGTGATACCTTCGTGTATGACTTTGTCACTCGAAGGTGGTCCTCCCCGT
TCGCGGCGCGTGAGAGGGCGCCGAGTCGACGATGTAAACACTCCGCAGTT
CTGTACAATGGGAAAATGTTTATTGTCGGAGGTTTTCAGTACAAGGGCGG
CGAGAACTATGCGCTCACTGACATGCACGCCCTTGACCTGGAATCTTTTA
CGTGGGAAAACTGTAGAATTGACGACTCGGCGCCTCAGGCACTTCAGGGA
CACAAGGCCGTTGTCTGTGGGGACACTATGTATATTCTTGGAGGGAAAGT
ACGGCCGCGAAACGTTAGAAATAGCATGCCTGCTCCAACGCTAAATCAAA
CATCTCCGGTCGGCATTATTCCCTCGAACATGGACATCAGCGTCACACAT
GTGAACCTTGCCTCGCTCATGCCTCGTGACAGTGATGGATCAATTCAGAT
CCCGTCTGAATATATGCCGGACGAAACGCGAAGCTCTGGCCTCAGCCATG
TCGTGTTTACCTACGATTTTGGAACTATGCGGTGGTCAGTACTTCGTACG
ATTGGAATGCCGCCGACCCCGAGACAATTGCACGCCGTCGTCCCTGTCCA
AACAAATGACTTCCGTTGTTCGATCTTTGTCTTTGGTGGCACGGATAGAT
CGAAGCAGAGGTATTATAATGATCTCGTTGAACTTCGAGGAATTCTATCA
CCCACCAAATATCCCGACAAATGCGAGACGTGTACGTCTACAAGATCTTT
GTTGAACAACGAGATGTTTTCTGATGTCAAATTCGTCATCGAGGGTAAGA
AAATCTACGCTCACAAGTGTATTTTGTACGCCCGGTCAGAGTACTTTAGG
GGTATGTTTGATTCCAGTATGCGGGAAGCTTCTGCGTCTGATATCCCGAT
ACCAGATGTAACGTACGAAGTATTCTACGGCGTTATGAACTACTTGTATG
CTGGAGAAGTTCGGGTACGCGATGGGCAAGTAGCGGTCGAGCTTCTCAAG
GCAGCAGATATGTTCAGATTAGAAGGATTGAAGAATAGGTGTGCTGAGAA
GCTGGAGCGAGGCGTAACACCACTCAACGCAGCGTTCATCTGTCAGGTTG
CAGACCGGCACAACTCTCCGAACTTGAAGAATTACTGTATAGCATACATC
GTTGAGAACTTTAAACACGTGATCAAGACGGAATCCTTCGTAGACCTTAT
GACGCAGGATGCTGGAGGTCTGGGCCGGGAAATATTGATAGCGTTCTCTG
ATAGCACATCTTACGATGGATTGAAACGTGCTCGAAAATAG