Gvermi12678.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12678.t1
Unique NameGvermi12678.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length173
Homology
BLAST of Gvermi12678.t1 vs. uniprot
Match: A0A2V3IR41_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR41_9FLOR)

HSP 1 Score: 259 bits (663), Expect = 2.180e-86
Identity = 131/171 (76.61%), Postives = 151/171 (88.30%), Query Frame = 0
Query:    1 MHVRSSSVILALFFVLHAAPADAYCRRRQRSRLVIVNPPTLFDPVPFGFSQIVVDTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGGPAPPAILFASDSLLEPGVLVEIQVDVAVPESFIRRLVC 171
            MH+RS  ++LAL FVL AA ADAYC RRQR RLV +NPPTL DPVPFG+SQIVVDTRNAVAHVAGQ+A NQTG LVGET  +QLEQT RN+ LALEAVEAD++D+LK+I++ VDLDP+TAED+LAAS +  GGPAPP I+F+SDSLLEPGVLVEIQVDVAVPESF+RRLVC
Sbjct:    1 MHIRSVFILLALLFVLQAADADAYCWRRQRRRLVRINPPTLLDPVPFGYSQIVVDTRNAVAHVAGQNAINQTGSLVGETFAEQLEQTLRNVELALEAVEADINDILKSILITVDLDPSTAEDILAASLMNAGGPAPPGIVFSSDSLLEPGVLVEIQVDVAVPESFVRRLVC 171          
BLAST of Gvermi12678.t1 vs. uniprot
Match: A0A2V3J4H8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4H8_9FLOR)

HSP 1 Score: 154 bits (390), Expect = 6.250e-45
Identity = 81/168 (48.21%), Postives = 108/168 (64.29%), Query Frame = 0
Query:    4 RSSSVILALFFVLHAAPADAYCRRRQRSRLVIVNPPTLFDPVPFGFSQIVVDTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGGPAPPAILFASDSLLEPGVLVEIQVDVAVPESFIRRLVC 171
            R++ + LAL F  H   A  +C R    R+ I+NPPTLFDPVPFGFS I VDT+N VAHVAGQ A NQTG ++G+TL +QL +T RNL  AL+AVEAD+SD+ +    I++ DP T       +    G P     L ++ +L   G+LVEI++D  V  SF+RRL+C
Sbjct:    3 RAAFLFLALIFCFHTTQATWFCLRTNNKRVRIINPPTLFDPVPFGFSHIAVDTKNFVAHVAGQVAINQTGAIIGDTLAEQLVETERNLLFALDAVEADISDITRVNAFILNFDPRTDLSTFMMTGKRLGSPV--TTLISTGALAIEGLLVEIELDAVVSRSFVRRLIC 168          
BLAST of Gvermi12678.t1 vs. uniprot
Match: A0A516H6E3_9PROT (RidA family protein n=1 Tax=Ferrovibrio terrae TaxID=2594003 RepID=A0A516H6E3_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 5.280e-14
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   37 NPPTLFDPVPFGFSQIVVDTRNAVAHVAGQSARNQTGFLVGE-TLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAASAIGFG-GPAPPAILFASDSLLEPGVLVEIQVDVAVPE 163
            NP  L  P   G++ + V T N   H++GQ A +  G +VG+  +  Q EQ +RNL +AL AV  + S + K +  +V L P     V AA A  FG GP P + L    +L+ P +L+E++V  AVPE
Sbjct:    7 NPDGLSKPT--GYTHVTVVTANQHVHISGQVALDSNGNVVGKGDIGAQAEQVYRNLEIALAAVGLNFSHVFKQVTYVVGLTPELLPPVRAARAKRFGDGPFPASTLVGVTALVNPDLLIEVEVIAAVPE 133          
BLAST of Gvermi12678.t1 vs. uniprot
Match: A0A2A5QTU9_9EURY (Enamine deaminase RidA n=2 Tax=Natrialbaceae TaxID=1644061 RepID=A0A2A5QTU9_9EURY)

HSP 1 Score: 72.4 bits (176), Expect = 3.460e-13
Identity = 44/129 (34.11%), Postives = 72/129 (55.81%), Query Frame = 0
Query:   36 VNPPTLFDPVPFGFSQIVVDTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGGPAPPA-ILFASDSLLEPGVLVEIQVDVAVPE 163
            +NP  + DPV   +SQ+VV +     HVAG +AR+  G +VGET  +Q+E+T  N+  +L A +A  +D+++  +  +D D    E+        +G  A PA  L  +DSL +P  L+E++V   + E
Sbjct:    6 INPEGIADPVDDLYSQVVVSSGEKTIHVAGTTARDSDGLVVGETYAEQIERTLANVDASLAAADAGPADVVRQTIYALDCDAFV-EEAYPHVVDFYGDDALPASALIGADSLADPDYLLELEVTAVIEE 133          
BLAST of Gvermi12678.t1 vs. uniprot
Match: A0A316ESS3_9BURK (Enamine deaminase RidA (YjgF/YER057c/UK114 family) n=1 Tax=Cupriavidus plantarum TaxID=942865 RepID=A0A316ESS3_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 4.370e-13
Identity = 48/129 (37.21%), Postives = 69/129 (53.49%), Query Frame = 0
Query:   36 VNPPTLFDPVPFGFSQIVVD-TRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGG-PAPPAILFASDSLLEPGVLVEIQVDVAVP 162
            +NPP L+DP P G+S +VV  T   + H+AGQ   + +G L  +    Q++Q  RNL  AL+A EAD++D++K  V+IVD   +      AA     G  PAP   L     L   G+L EI+    +P
Sbjct:   15 INPPELYDPRPNGYSHVVVTHTPARIVHIAGQGGEDASGALPPD-FASQVDQALRNLRHALQAAEADIADVVKITVLIVDHSMDRLRTFSAAWQALLGDWPAPACTLIPVPRLALDGMLFEIEATAVLP 142          
BLAST of Gvermi12678.t1 vs. uniprot
Match: A0A6L8EIQ8_9GAMM (RidA family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EIQ8_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 5.380e-12
Identity = 40/122 (32.79%), Postives = 70/122 (57.38%), Query Frame = 0
Query:   36 VNPPTLFDPVPFGFSQIVVDTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAASAIGFG-GPAPPAILFASDSLLEPGVLVEIQ 156
            ++P  +   V  G++ +VV T   + H AGQ   +    LVGETL +Q++Q+F+ + +AL A  A  +D+++  + IVD + +  + V+  +A  +  G  PP+ L    SL  PG++VEI+
Sbjct:    6 IHPEGILPDVVHGYTSVVVSTGKKMVHCAGQVPMDADLNLVGETLGEQMDQSFKAIGVALAAGGATPADVVRGRIYIVDYNADMVQTVIEKTAAFYAPGEPPPSTLIGVQSLALPGIMVEIE 127          
BLAST of Gvermi12678.t1 vs. uniprot
Match: UPI001CAF501F (RidA family protein n=1 Tax=Cupriavidus pampae TaxID=659251 RepID=UPI001CAF501F)

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-11
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = 0
Query:   36 VNPPTLFDPVPFGFSQIVV-DTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGG-PAPPAILFASDSLLEPGVLVEIQVDVAVP 162
            +NPP L+DP P G+S +VV  T   + H AGQ   + TG L  +    Q++Q  RNL  AL+A +AD++D++K  V++VD           A     G  PAP   L     L   G+L E++    +P
Sbjct:   15 INPPELYDPRPNGYSHVVVAHTPARIVHAAGQGGEDATGALAPD-FAAQVDQALRNLRHALQAADADIADVVKITVLVVDHSMERLRIFTEAWQALLGDWPAPACTLIPVPRLALDGMLFEVEATAVLP 142          
BLAST of Gvermi12678.t1 vs. uniprot
Match: A0A562CZE0_9ACTN (Enamine deaminase RidA (YjgF/YER057c/UK114 family) n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A562CZE0_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 1.560e-11
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 0
Query:   33 LVIVNPPTLFDPVPFGFSQIVVDTRNAVAHVAGQSARNQTGFLVGE-TLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAA---SAIGFGGPAPPAILFASDSLLEPGVLVEI 155
            + ++NPP L +P    +  + + +     +VAGQ AR+ TG  V    L  Q+EQ +RN+A+ALEA  A  +D+++    +VD      E ++A    +    G  APPA L    SL EP VLVEI
Sbjct:    3 VTLINPPGLAEPPVGAYHHVAIASGTRHVYVAGQIARDATGAPVATGDLAGQVEQAYRNIAVALEAAGATFADVVRLTFYVVDWSAEKFEPLVAGINRATEELGVTAPPASLIEVVSLFEPDVLVEI 129          
BLAST of Gvermi12678.t1 vs. uniprot
Match: A0A6L8VKW1_9RHOB (RidA family protein n=1 Tax=Frigidibacter albus TaxID=1465486 RepID=A0A6L8VKW1_9RHOB)

HSP 1 Score: 67.8 bits (164), Expect = 2.040e-11
Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 0
Query:   36 VNPPTLFDPVPFGFSQIVVDTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGGPAPPAILFASDSLLEPGVLVEIQ 156
            +NPPTL D  P G+SQ+ +     +  ++GQ A +  G  V   L  Q+    RN A ALEA  A   +++   + +VDLDP     ++A  A  FGG AP       ++L  P   +EI+
Sbjct:    8 LNPPTLPDAAPLGYSQVAIAAPGRMVFISGQVAASVDGSPVPPGLADQVTIVLRNFASALEAAGATPDNVVSLRIYVVDLDPEGVGALMAPLAAMFGGQAPALTGIGVNALASPEFKIEIE 128          
BLAST of Gvermi12678.t1 vs. uniprot
Match: UPI001CAFAF44 (RidA family protein n=2 Tax=Cupriavidus respiraculi TaxID=195930 RepID=UPI001CAFAF44)

HSP 1 Score: 67.8 bits (164), Expect = 3.380e-11
Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 0
Query:   16 LHAAPADAYCRRRQRSRLVIVNPPTLFDPVPFGFSQI-VVDTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEADLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGGPAPPAI-LFASDSLLEPGVLVEIQVDVAVP 162
            L + P  ++      + L  +NPP L+DPVP G+S + VV T   + + AGQ   N  G+L  +   +Q+ Q   N+ +AL A  AD+ D+ K  V++VD      E   AA    +G   PPA  L     L   G+L EI+    +P
Sbjct:    8 LPSQPTRSHHASASANVLRFINPPALYDPVPNGYSHVAVVTTPGRIVYAAGQGGENMHGYLPAD-FAEQVRQAMWNMRIALRAGGADVPDVAKLTVLVVDHSMEKLEIFGAALREMWGDWEPPACTLIPVPRLALDGMLFEIEATAVLP 155          
The following BLAST results are available for this feature:
BLAST of Gvermi12678.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IR41_9FLOR2.180e-8676.61Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J4H8_9FLOR6.250e-4548.21Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A516H6E3_9PROT5.280e-1437.98RidA family protein n=1 Tax=Ferrovibrio terrae Tax... [more]
A0A2A5QTU9_9EURY3.460e-1334.11Enamine deaminase RidA n=2 Tax=Natrialbaceae TaxID... [more]
A0A316ESS3_9BURK4.370e-1337.21Enamine deaminase RidA (YjgF/YER057c/UK114 family)... [more]
A0A6L8EIQ8_9GAMM5.380e-1232.79RidA family protein n=1 Tax=Gammaproteobacteria ba... [more]
UPI001CAF501F1.300e-1134.88RidA family protein n=1 Tax=Cupriavidus pampae Tax... [more]
A0A562CZE0_9ACTN1.560e-1136.22Enamine deaminase RidA (YjgF/YER057c/UK114 family)... [more]
A0A6L8VKW1_9RHOB2.040e-1133.88RidA family protein n=1 Tax=Frigidibacter albus Ta... [more]
UPI001CAFAF443.380e-1132.89RidA family protein n=2 Tax=Cupriavidus respiracul... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 81..101
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableCDDcd00448YjgF_YER057c_UK114_familycoord: 49..157
e-value: 2.5845E-15
score: 66.0427
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 49..160
e-value: 1.0E-13
score: 51.3
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 32..163
e-value: 1.0E-15
score: 59.9
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 33..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:651714..652232 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12678.t1Gvermi12678.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 651714..652232 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12678.t1 ID=Gvermi12678.t1|Name=Gvermi12678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=173bp
MHVRSSSVILALFFVLHAAPADAYCRRRQRSRLVIVNPPTLFDPVPFGFS
QIVVDTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEA
DLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGGPAPPAILFASDSLLEPG
VLVEIQVDVAVPESFIRRLVCY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006175YjgF/YER057c/UK114
IPR035959RutC-like_sf