Gvermi12726.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12726.t1
Unique Name	Gvermi12726.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1225758..1227152 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706196.1
Preferred name	SARS
PFAMs	Seryl_tRNA_N,tRNA-synt_2b
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01875
KEGG Reaction	R03662,R08218
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
GOs	GO:0000122,GO:0000166,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001525,GO:0001568,GO:0001569,GO:0001763,GO:0001817,GO:0001818,GO:0001944,GO:0002009,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003824,GO:0004812,GO:0004828,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009069,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010574,GO:0010605,GO:0010629,GO:0016070,GO:0016259,GO:0016525,GO:0016874,GO:0016875,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0022603,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035239,GO:0035295,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0045892,GO:0045934,GO:0046483,GO:0046686,GO:0046983,GO:0048514,GO:0048519,GO:0048523,GO:0048646,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060429,GO:0060562,GO:0061138,GO:0065007,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098619,GO:0140098,GO:0140101,GO:1901265,GO:1901342,GO:1901343,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1902679,GO:1903506,GO:1903507,GO:1903670,GO:1903671,GO:1904046,GO:1990837,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000181,GO:2001141
Evalue	4.48e-175
EggNOG OGs	COG0172@1\|root,KOG2509@2759\|Eukaryota
EC	6.1.1.11
Description	seryl-tRNA aminoacylation
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12726	Gvermi12726	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1225758..1227152 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12726.t1.start1	Gvermi12726.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1225758..1225760 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12726.t1.CDS1	Gvermi12726.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1225758..1227152 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12726.t1.exon1	Gvermi12726.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1225758..1227152 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12726.t1.stop1	Gvermi12726.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1227150..1227152 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12726.t1	Gvermi12726.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1225758..1227152 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1225758..1227152+
coding sequence from alignment at ScGOVlb_425:1225758..1227152+

mRNA sequence

>Gvermi12726.t1 ID=Gvermi12726.t1|Name=Gvermi12726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=465bp
MLDINLFREDRGGNPELVRESQRRRFKKESLVDDVIKWDKEWRSVRYDLD
CISKKRNELNGQLKEIKIKGRKPETNIDPDGSKEANIKQQKEGLAKDETQ
LKERLTVIEKERDTILKSIGNVLHHTVPVFADEEHNRVERVWPESGERPA
APGKGLTHVDLLYMIGGVEYARGVTCAGSRGYYLMGPAVLLNMAIIQYSL
RFLSDRGYTAIQPPYFMEKDQMAKCAQLDDFDEQLYKVSGDGDKYLIATS
EQPICVYHADEWVEERDLPRKFAGFSTNFRKEAGSHGRDQLGIFRVHQFD
KIEQFCVTSPEDNASYEMLETMIHNAEEFYQTLGLTYQVISIVSGAMNDA
ASKKFDLEAWFPGASGGKGEYRELVSASNCTDYQSRKLETRCGIKKMGDT
NKRYVHMLNSTLCATTRTICCILETYQTESGITVPEVLRPILGMDTIPFV
RDPPKVKAKGSKKK*

spliced messenger RNA

>Gvermi12726.t1 ID=Gvermi12726.t1|Name=Gvermi12726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at ScGOVlb_425:1225758..1227152+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGATATCAACCTCTTTCGAGAAGACCGCGGTGGGAACCCTGAGCT
CGTGAGAGAAAGCCAGAGGAGGAGATTCAAAAAGGAGAGCCTGGTTGATG
ATGTTATCAAGTGGGATAAGGAATGGCGATCCGTCCGATACGACCTGGAC
TGCATCTCGAAAAAGCGGAATGAACTCAATGGCCAATTGAAAGAGATCAA
GATCAAAGGAAGGAAACCAGAAACGAATATTGACCCAGATGGTTCTAAGG
AAGCAAACATCAAGCAGCAAAAAGAAGGATTAGCTAAGGATGAAACTCAA
CTTAAGGAGAGACTCACTGTCATAGAGAAAGAGCGCGATACTATCCTCAA
ATCAATCGGAAACGTTCTTCACCACACGGTGCCTGTGTTCGCCGATGAAG
AGCATAACCGCGTCGAGCGTGTATGGCCAGAGAGTGGTGAACGCCCCGCA
GCGCCTGGAAAGGGACTGACACACGTTGATTTGCTATACATGATTGGTGG
CGTCGAGTACGCAAGGGGAGTCACTTGCGCCGGTAGCAGAGGCTACTATC
TGATGGGACCGGCAGTACTCCTCAACATGGCTATCATCCAGTACAGTTTG
CGTTTTCTCAGTGACCGCGGATACACGGCGATTCAACCCCCTTACTTTAT
GGAAAAGGATCAAATGGCAAAGTGTGCCCAACTTGACGACTTTGACGAAC
AACTGTACAAGGTTTCTGGAGATGGTGACAAGTATCTGATCGCGACGAGT
GAACAACCAATCTGCGTATACCACGCGGACGAATGGGTTGAAGAACGAGA
TTTGCCTCGAAAGTTCGCAGGGTTCTCAACCAACTTCAGAAAGGAGGCTG
GTTCTCACGGACGTGATCAGTTGGGAATTTTCCGCGTTCATCAATTCGAC
AAGATTGAACAGTTTTGCGTTACGTCCCCGGAGGATAATGCGTCTTATGA
AATGCTGGAGACTATGATCCACAATGCAGAGGAGTTTTACCAAACGCTTG
GACTTACGTACCAAGTAATTAGCATTGTTTCTGGCGCTATGAACGATGCC
GCGTCGAAGAAATTTGACTTAGAAGCATGGTTCCCAGGCGCTAGTGGAGG
AAAAGGCGAGTACCGTGAGCTTGTCTCCGCCTCCAACTGTACCGATTACC
AGTCGCGAAAGCTGGAAACGCGATGTGGCATCAAAAAGATGGGAGATACA
AACAAACGATATGTACACATGCTCAACTCCACTCTTTGCGCGACGACGAG
AACAATTTGTTGCATTTTGGAAACTTATCAAACGGAAAGCGGCATCACAG
TGCCAGAAGTGTTGCGCCCCATTCTGGGCATGGATACAATTCCATTTGTA
CGCGACCCGCCGAAGGTTAAGGCAAAGGGTTCCAAGAAGAAGTAA

protein sequence of Gvermi12726.t1

>Gvermi12726.t1 ID=Gvermi12726.t1|Name=Gvermi12726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=465bp
MLDINLFREDRGGNPELVRESQRRRFKKESLVDDVIKWDKEWRSVRYDLD
CISKKRNELNGQLKEIKIKGRKPETNIDPDGSKEANIKQQKEGLAKDETQ
LKERLTVIEKERDTILKSIGNVLHHTVPVFADEEHNRVERVWPESGERPA
APGKGLTHVDLLYMIGGVEYARGVTCAGSRGYYLMGPAVLLNMAIIQYSL
RFLSDRGYTAIQPPYFMEKDQMAKCAQLDDFDEQLYKVSGDGDKYLIATS
EQPICVYHADEWVEERDLPRKFAGFSTNFRKEAGSHGRDQLGIFRVHQFD
KIEQFCVTSPEDNASYEMLETMIHNAEEFYQTLGLTYQVISIVSGAMNDA
ASKKFDLEAWFPGASGGKGEYRELVSASNCTDYQSRKLETRCGIKKMGDT
NKRYVHMLNSTLCATTRTICCILETYQTESGITVPEVLRPILGMDTIPFV
RDPPKVKAKGSKKK*

mRNA from alignment at ScGOVlb_425:1225758..1227152+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12726.t1 ID=Gvermi12726.t1|Name=Gvermi12726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at ScGOVlb_425:1225758..1227152+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGATATCAACCTCTTTCGAGAAGACCGCGGTGGGAACCCTGAGCT
CGTGAGAGAAAGCCAGAGGAGGAGATTCAAAAAGGAGAGCCTGGTTGATG
ATGTTATCAAGTGGGATAAGGAATGGCGATCCGTCCGATACGACCTGGAC
TGCATCTCGAAAAAGCGGAATGAACTCAATGGCCAATTGAAAGAGATCAA
GATCAAAGGAAGGAAACCAGAAACGAATATTGACCCAGATGGTTCTAAGG
AAGCAAACATCAAGCAGCAAAAAGAAGGATTAGCTAAGGATGAAACTCAA
CTTAAGGAGAGACTCACTGTCATAGAGAAAGAGCGCGATACTATCCTCAA
ATCAATCGGAAACGTTCTTCACCACACGGTGCCTGTGTTCGCCGATGAAG
AGCATAACCGCGTCGAGCGTGTATGGCCAGAGAGTGGTGAACGCCCCGCA
GCGCCTGGAAAGGGACTGACACACGTTGATTTGCTATACATGATTGGTGG
CGTCGAGTACGCAAGGGGAGTCACTTGCGCCGGTAGCAGAGGCTACTATC
TGATGGGACCGGCAGTACTCCTCAACATGGCTATCATCCAGTACAGTTTG
CGTTTTCTCAGTGACCGCGGATACACGGCGATTCAACCCCCTTACTTTAT
GGAAAAGGATCAAATGGCAAAGTGTGCCCAACTTGACGACTTTGACGAAC
AACTGTACAAGGTTTCTGGAGATGGTGACAAGTATCTGATCGCGACGAGT
GAACAACCAATCTGCGTATACCACGCGGACGAATGGGTTGAAGAACGAGA
TTTGCCTCGAAAGTTCGCAGGGTTCTCAACCAACTTCAGAAAGGAGGCTG
GTTCTCACGGACGTGATCAGTTGGGAATTTTCCGCGTTCATCAATTCGAC
AAGATTGAACAGTTTTGCGTTACGTCCCCGGAGGATAATGCGTCTTATGA
AATGCTGGAGACTATGATCCACAATGCAGAGGAGTTTTACCAAACGCTTG
GACTTACGTACCAAGTAATTAGCATTGTTTCTGGCGCTATGAACGATGCC
GCGTCGAAGAAATTTGACTTAGAAGCATGGTTCCCAGGCGCTAGTGGAGG
AAAAGGCGAGTACCGTGAGCTTGTCTCCGCCTCCAACTGTACCGATTACC
AGTCGCGAAAGCTGGAAACGCGATGTGGCATCAAAAAGATGGGAGATACA
AACAAACGATATGTACACATGCTCAACTCCACTCTTTGCGCGACGACGAG
AACAATTTGTTGCATTTTGGAAACTTATCAAACGGAAAGCGGCATCACAG
TGCCAGAAGTGTTGCGCCCCATTCTGGGCATGGATACAATTCCATTTGTA
CGCGACCCGCCGAAGGTTAAGGCAAAGGGTTCCAAGAAGAAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1225758..1227152+

>Gvermi12726.t1 ID=Gvermi12726.t1|Name=Gvermi12726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1395bp|location=Sequence derived from alignment at ScGOVlb_425:1225758..1227152+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGATATCAACCTCTTTCGAGAAGACCGCGGTGGGAACCCTGAGCT
CGTGAGAGAAAGCCAGAGGAGGAGATTCAAAAAGGAGAGCCTGGTTGATG
ATGTTATCAAGTGGGATAAGGAATGGCGATCCGTCCGATACGACCTGGAC
TGCATCTCGAAAAAGCGGAATGAACTCAATGGCCAATTGAAAGAGATCAA
GATCAAAGGAAGGAAACCAGAAACGAATATTGACCCAGATGGTTCTAAGG
AAGCAAACATCAAGCAGCAAAAAGAAGGATTAGCTAAGGATGAAACTCAA
CTTAAGGAGAGACTCACTGTCATAGAGAAAGAGCGCGATACTATCCTCAA
ATCAATCGGAAACGTTCTTCACCACACGGTGCCTGTGTTCGCCGATGAAG
AGCATAACCGCGTCGAGCGTGTATGGCCAGAGAGTGGTGAACGCCCCGCA
GCGCCTGGAAAGGGACTGACACACGTTGATTTGCTATACATGATTGGTGG
CGTCGAGTACGCAAGGGGAGTCACTTGCGCCGGTAGCAGAGGCTACTATC
TGATGGGACCGGCAGTACTCCTCAACATGGCTATCATCCAGTACAGTTTG
CGTTTTCTCAGTGACCGCGGATACACGGCGATTCAACCCCCTTACTTTAT
GGAAAAGGATCAAATGGCAAAGTGTGCCCAACTTGACGACTTTGACGAAC
AACTGTACAAGGTTTCTGGAGATGGTGACAAGTATCTGATCGCGACGAGT
GAACAACCAATCTGCGTATACCACGCGGACGAATGGGTTGAAGAACGAGA
TTTGCCTCGAAAGTTCGCAGGGTTCTCAACCAACTTCAGAAAGGAGGCTG
GTTCTCACGGACGTGATCAGTTGGGAATTTTCCGCGTTCATCAATTCGAC
AAGATTGAACAGTTTTGCGTTACGTCCCCGGAGGATAATGCGTCTTATGA
AATGCTGGAGACTATGATCCACAATGCAGAGGAGTTTTACCAAACGCTTG
GACTTACGTACCAAGTAATTAGCATTGTTTCTGGCGCTATGAACGATGCC
GCGTCGAAGAAATTTGACTTAGAAGCATGGTTCCCAGGCGCTAGTGGAGG
AAAAGGCGAGTACCGTGAGCTTGTCTCCGCCTCCAACTGTACCGATTACC
AGTCGCGAAAGCTGGAAACGCGATGTGGCATCAAAAAGATGGGAGATACA
AACAAACGATATGTACACATGCTCAACTCCACTCTTTGCGCGACGACGAG
AACAATTTGTTGCATTTTGGAAACTTATCAAACGGAAAGCGGCATCACAG
TGCCAGAAGTGTTGCGCCCCATTCTGGGCATGGATACAATTCCATTTGTA
CGCGACCCGCCGAAGGTTAAGGCAAAGGGTTCCAAGAAGAAGTAA