Gvermi12714.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12714.t1
Unique NameGvermi12714.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length604
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1105377..1107296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue1.08e-95
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12714Gvermi12714Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1105377..1107296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12714.t1Gvermi12714.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1105377..1107296 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12714.t1.start1Gvermi12714.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1105377..1105379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12714.t1.CDS1Gvermi12714.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1105377..1105514 +
Gvermi12714.t1.CDS2Gvermi12714.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1105623..1107296 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12714.t1.exon1Gvermi12714.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1105377..1105514 +
Gvermi12714.t1.exon2Gvermi12714.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1105623..1107296 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12714.t1.intron1Gvermi12714.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1105515..1105622 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12714.t1.stop1Gvermi12714.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1107294..1107296 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12714.t1 ID=Gvermi12714.t1|Name=Gvermi12714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=604bp
MSGLRHGPPLAMNGYMDKEGRKFRARKTRYFKLKDSALFNHRRKDSLPTW
GVSLIDSRVAVGHKGEIIVQLFDGKKILLFPHSRSECDQWVDLLQRASRR
KIGNYYGVTGLVGMGSFAEVRIGYDKSTGQQVAIKVMKKNKRDTELMRSV
ECEMNFISKNIDHSNIVATYDVFDTRDNLFIVMEYMPGGMLYDILANEGY
FSEKNAANVMSDLLRAVQCLHENDIVHRDIKPENVLAVHKTWPLDVKLAD
FGLADFVLENSFGEKSTCGMYGTPFFVAPEVIRAETYTPAVDIWSLGVLA
YNMLSGKLPFDGNNIKEVLRRVRSGKYSFPETEWADISEHAKDFISGLLE
LDPKRRLSAAQALQHPWLTSSDISERAITNDRSALGYEQRKLRMSSMAID
DVAGLLSLEEDEEHADDHGLRALSRLFPGKINKSAKSSRSSGSSKGQAVA
VESSRTRDMDDSAAVSNAAPLRIAHVVEEENALSEVSTGSQLRGVGDFVR
WEDALRPNMAAWTEGGRGGGYQGGLQFNDKFGGGSAEDFALPAILSVKDI
VRRKREAGAGAGAGGGGGGEGEGGGRWRAGALVHDSDSDADDFATAVESG
ALE*
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spliced messenger RNA

>Gvermi12714.t1 ID=Gvermi12714.t1|Name=Gvermi12714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1812bp|location=Sequence derived from alignment at ScGOVlb_425:1105377..1107296+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCTTGCGACATGGCCCCCCGCTGGCCATGAACGGTTACATGGA
CAAGGAGGGCAGGAAGTTCCGCGCCAGAAAAACGCGATACTTCAAACTCA
AGGACTCGGCGCTTTTCAACCATCGCCGGAAGGACTCGCTTCCAACCTGG
GGTGTGAGCCTCATCGACAGCCGCGTCGCCGTCGGTCACAAGGGTGAAAT
CATTGTACAGTTGTTTGATGGAAAGAAGATTTTGCTCTTCCCGCACTCCA
GGTCCGAGTGCGACCAGTGGGTCGATCTGCTGCAGCGCGCCTCCCGCCGC
AAAATAGGAAACTACTATGGAGTCACCGGTCTCGTCGGTATGGGCTCCTT
TGCCGAGGTGCGCATAGGCTACGACAAGTCCACCGGCCAACAAGTCGCCA
TCAAGGTTATGAAGAAGAACAAGCGCGACACGGAGCTCATGCGCAGTGTG
GAGTGTGAGATGAACTTCATCTCCAAGAACATCGACCACTCCAACATCGT
CGCCACGTACGACGTGTTTGACACTCGCGACAACCTGTTCATTGTCATGG
AGTACATGCCCGGCGGCATGCTGTACGATATTCTCGCCAACGAGGGCTAC
TTTTCGGAGAAGAACGCTGCCAACGTCATGAGCGATCTTCTTCGCGCCGT
GCAATGTCTGCACGAAAACGACATTGTGCACCGCGATATCAAGCCGGAGA
ACGTGCTGGCGGTGCACAAAACGTGGCCCTTGGACGTGAAGTTGGCCGAT
TTTGGGTTGGCCGACTTTGTGCTGGAGAACTCGTTCGGAGAGAAGTCCAC
ATGCGGCATGTACGGAACGCCTTTTTTCGTGGCGCCGGAGGTGATCCGTG
CGGAGACGTACACACCCGCGGTGGACATCTGGTCGTTGGGGGTGCTCGCG
TATAACATGTTGAGCGGCAAACTACCGTTCGACGGAAACAACATCAAGGA
GGTGTTGCGGCGTGTGCGGAGCGGCAAGTACTCGTTCCCGGAGACGGAGT
GGGCGGACATTTCGGAGCACGCAAAGGACTTCATCAgcgggctgttggaa
ctggacccaaagcgcagactgtctgctgcacaagctctgcagcacccgtg
gctgACGTCGAGCGACATTTCGGAGCGCGCCATCACCAACGACCGATCGG
CGCTGGGTTACGAGCAGCGCAAGCTGCGCATGTCTTCAATGGCCATCGAC
GACGTGGCGGGACTGCTGAGCTTGGAGGAGGACGAGGAGCACGCCGACGA
CCACGGTCTGCGTGCGCTGTCGCGGCTGTTCCCCGGCAAGATTAATAAGA
GCGCGAAGAGCTCGCGGTCGTCGGGGTCGAGCAAGGGGCAGGCGGTGGCT
GTGGAGAGCAGTCGCACGCGCGACATGGACGACAGCGCGGCCGTGAGCAA
CGCGGCGCCGCTGCGCATTGCGCACGTGGTGGAGGAGGAGAACGCGCTGA
GCGAGGTGTCGACGGGGAGCCAGCTTCGGGGGGTGGGCGACTTTGTGCGG
TGGGAGGACGCGCTACGGCCGAACATGGCGGCGTGGACGGAGGGCGGACG
CGGGGGGGGATACCAAGGGGGGCTCCAGTTCAACGACAAGTTCGGAGGCG
GGAGCGCGGAAGACTTTGCGCTGCCGGCGATTCTGTCGGTGAAGGATATC
GTGCGGCGGAAgcgcgaggcgggcgctggcgccggcgcgggggggggcgg
cggtggcgagggcgaggggggcgggcgctggcgagcgggcgcATTGGTGC
ACGACAGCGACTCAGACGCGGACGACTTTGCCACGGCCGTGGAGAGCGGC
GCGTTGGAGTAA
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protein sequence of Gvermi12714.t1

>Gvermi12714.t1 ID=Gvermi12714.t1|Name=Gvermi12714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=604bp
MSGLRHGPPLAMNGYMDKEGRKFRARKTRYFKLKDSALFNHRRKDSLPTW
GVSLIDSRVAVGHKGEIIVQLFDGKKILLFPHSRSECDQWVDLLQRASRR
KIGNYYGVTGLVGMGSFAEVRIGYDKSTGQQVAIKVMKKNKRDTELMRSV
ECEMNFISKNIDHSNIVATYDVFDTRDNLFIVMEYMPGGMLYDILANEGY
FSEKNAANVMSDLLRAVQCLHENDIVHRDIKPENVLAVHKTWPLDVKLAD
FGLADFVLENSFGEKSTCGMYGTPFFVAPEVIRAETYTPAVDIWSLGVLA
YNMLSGKLPFDGNNIKEVLRRVRSGKYSFPETEWADISEHAKDFISGLLE
LDPKRRLSAAQALQHPWLTSSDISERAITNDRSALGYEQRKLRMSSMAID
DVAGLLSLEEDEEHADDHGLRALSRLFPGKINKSAKSSRSSGSSKGQAVA
VESSRTRDMDDSAAVSNAAPLRIAHVVEEENALSEVSTGSQLRGVGDFVR
WEDALRPNMAAWTEGGRGGGYQGGLQFNDKFGGGSAEDFALPAILSVKDI
VRRKREAGAGAGAGGGGGGEGEGGGRWRAGALVHDSDSDADDFATAVESG
ALE*
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mRNA from alignment at ScGOVlb_425:1105377..1107296+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12714.t1 ID=Gvermi12714.t1|Name=Gvermi12714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at ScGOVlb_425:1105377..1107296+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGCTTGCGACATGGCCCCCCGCTGGCCATGAACGGTTACATGGA
CAAGGAGGGCAGGAAGTTCCGCGCCAGAAAAACGCGATACTTCAAACTCA
AGGACTCGGCGCTTTTCAACCATCGCCGGAAGGACTCGGTACGTTCCCTC
GCCCACGTTGCCCCATCATCATGCCTCCCCGCGTACCCCGTCCACTAACA
CCGCTCGTCTTCCCGCACCTGCGTGCCCTTGCGTGCCGCCGTGCAGCTTC
CAACCTGGGGTGTGAGCCTCATCGACAGCCGCGTCGCCGTCGGTCACAAG
GGTGAAATCATTGTACAGTTGTTTGATGGAAAGAAGATTTTGCTCTTCCC
GCACTCCAGGTCCGAGTGCGACCAGTGGGTCGATCTGCTGCAGCGCGCCT
CCCGCCGCAAAATAGGAAACTACTATGGAGTCACCGGTCTCGTCGGTATG
GGCTCCTTTGCCGAGGTGCGCATAGGCTACGACAAGTCCACCGGCCAACA
AGTCGCCATCAAGGTTATGAAGAAGAACAAGCGCGACACGGAGCTCATGC
GCAGTGTGGAGTGTGAGATGAACTTCATCTCCAAGAACATCGACCACTCC
AACATCGTCGCCACGTACGACGTGTTTGACACTCGCGACAACCTGTTCAT
TGTCATGGAGTACATGCCCGGCGGCATGCTGTACGATATTCTCGCCAACG
AGGGCTACTTTTCGGAGAAGAACGCTGCCAACGTCATGAGCGATCTTCTT
CGCGCCGTGCAATGTCTGCACGAAAACGACATTGTGCACCGCGATATCAA
GCCGGAGAACGTGCTGGCGGTGCACAAAACGTGGCCCTTGGACGTGAAGT
TGGCCGATTTTGGGTTGGCCGACTTTGTGCTGGAGAACTCGTTCGGAGAG
AAGTCCACATGCGGCATGTACGGAACGCCTTTTTTCGTGGCGCCGGAGGT
GATCCGTGCGGAGACGTACACACCCGCGGTGGACATCTGGTCGTTGGGGG
TGCTCGCGTATAACATGTTGAGCGGCAAACTACCGTTCGACGGAAACAAC
ATCAAGGAGGTGTTGCGGCGTGTGCGGAGCGGCAAGTACTCGTTCCCGGA
GACGGAGTGGGCGGACATTTCGGAGCACGCAAAGGACTTCATCAgcgggc
tgttggaactggacccaaagcgcagactgtctgctgcacaagctctgcag
cacccgtggctgACGTCGAGCGACATTTCGGAGCGCGCCATCACCAACGA
CCGATCGGCGCTGGGTTACGAGCAGCGCAAGCTGCGCATGTCTTCAATGG
CCATCGACGACGTGGCGGGACTGCTGAGCTTGGAGGAGGACGAGGAGCAC
GCCGACGACCACGGTCTGCGTGCGCTGTCGCGGCTGTTCCCCGGCAAGAT
TAATAAGAGCGCGAAGAGCTCGCGGTCGTCGGGGTCGAGCAAGGGGCAGG
CGGTGGCTGTGGAGAGCAGTCGCACGCGCGACATGGACGACAGCGCGGCC
GTGAGCAACGCGGCGCCGCTGCGCATTGCGCACGTGGTGGAGGAGGAGAA
CGCGCTGAGCGAGGTGTCGACGGGGAGCCAGCTTCGGGGGGTGGGCGACT
TTGTGCGGTGGGAGGACGCGCTACGGCCGAACATGGCGGCGTGGACGGAG
GGCGGACGCGGGGGGGGATACCAAGGGGGGCTCCAGTTCAACGACAAGTT
CGGAGGCGGGAGCGCGGAAGACTTTGCGCTGCCGGCGATTCTGTCGGTGA
AGGATATCGTGCGGCGGAAgcgcgaggcgggcgctggcgccggcgcgggg
gggggcggcggtggcgagggcgaggggggcgggcgctggcgagcgggcgc
ATTGGTGCACGACAGCGACTCAGACGCGGACGACTTTGCCACGGCCGTGG
AGAGCGGCGCGTTGGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1105377..1107296+

>Gvermi12714.t1 ID=Gvermi12714.t1|Name=Gvermi12714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1812bp|location=Sequence derived from alignment at ScGOVlb_425:1105377..1107296+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGCTTGCGACATGGCCCCCCGCTGGCCATGAACGGTTACATGGA
CAAGGAGGGCAGGAAGTTCCGCGCCAGAAAAACGCGATACTTCAAACTCA
AGGACTCGGCGCTTTTCAACCATCGCCGGAAGGACTCGCTTCCAACCTGG
GGTGTGAGCCTCATCGACAGCCGCGTCGCCGTCGGTCACAAGGGTGAAAT
CATTGTACAGTTGTTTGATGGAAAGAAGATTTTGCTCTTCCCGCACTCCA
GGTCCGAGTGCGACCAGTGGGTCGATCTGCTGCAGCGCGCCTCCCGCCGC
AAAATAGGAAACTACTATGGAGTCACCGGTCTCGTCGGTATGGGCTCCTT
TGCCGAGGTGCGCATAGGCTACGACAAGTCCACCGGCCAACAAGTCGCCA
TCAAGGTTATGAAGAAGAACAAGCGCGACACGGAGCTCATGCGCAGTGTG
GAGTGTGAGATGAACTTCATCTCCAAGAACATCGACCACTCCAACATCGT
CGCCACGTACGACGTGTTTGACACTCGCGACAACCTGTTCATTGTCATGG
AGTACATGCCCGGCGGCATGCTGTACGATATTCTCGCCAACGAGGGCTAC
TTTTCGGAGAAGAACGCTGCCAACGTCATGAGCGATCTTCTTCGCGCCGT
GCAATGTCTGCACGAAAACGACATTGTGCACCGCGATATCAAGCCGGAGA
ACGTGCTGGCGGTGCACAAAACGTGGCCCTTGGACGTGAAGTTGGCCGAT
TTTGGGTTGGCCGACTTTGTGCTGGAGAACTCGTTCGGAGAGAAGTCCAC
ATGCGGCATGTACGGAACGCCTTTTTTCGTGGCGCCGGAGGTGATCCGTG
CGGAGACGTACACACCCGCGGTGGACATCTGGTCGTTGGGGGTGCTCGCG
TATAACATGTTGAGCGGCAAACTACCGTTCGACGGAAACAACATCAAGGA
GGTGTTGCGGCGTGTGCGGAGCGGCAAGTACTCGTTCCCGGAGACGGAGT
GGGCGGACATTTCGGAGCACGCAAAGGACTTCATCAgcgggctgttggaa
ctggacccaaagcgcagactgtctgctgcacaagctctgcagcacccgtg
gctgACGTCGAGCGACATTTCGGAGCGCGCCATCACCAACGACCGATCGG
CGCTGGGTTACGAGCAGCGCAAGCTGCGCATGTCTTCAATGGCCATCGAC
GACGTGGCGGGACTGCTGAGCTTGGAGGAGGACGAGGAGCACGCCGACGA
CCACGGTCTGCGTGCGCTGTCGCGGCTGTTCCCCGGCAAGATTAATAAGA
GCGCGAAGAGCTCGCGGTCGTCGGGGTCGAGCAAGGGGCAGGCGGTGGCT
GTGGAGAGCAGTCGCACGCGCGACATGGACGACAGCGCGGCCGTGAGCAA
CGCGGCGCCGCTGCGCATTGCGCACGTGGTGGAGGAGGAGAACGCGCTGA
GCGAGGTGTCGACGGGGAGCCAGCTTCGGGGGGTGGGCGACTTTGTGCGG
TGGGAGGACGCGCTACGGCCGAACATGGCGGCGTGGACGGAGGGCGGACG
CGGGGGGGGATACCAAGGGGGGCTCCAGTTCAACGACAAGTTCGGAGGCG
GGAGCGCGGAAGACTTTGCGCTGCCGGCGATTCTGTCGGTGAAGGATATC
GTGCGGCGGAAgcgcgaggcgggcgctggcgccggcgcgggggggggcgg
cggtggcgagggcgaggggggcgggcgctggcgagcgggcgcATTGGTGC
ACGACAGCGACTCAGACGCGGACGACTTTGCCACGGCCGTGGAGAGCGGC
GCGTTGGAGTAA
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