Gvermi12742.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12742.t1
Unique NameGvermi12742.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1358969..1359832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707053.1
PFAMsECH_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00770,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103
KEGG koko:K07511
KEGG ReactionR02685,R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06942
KEGG Pathwayko00062,ko00071,ko00280,ko00310,ko00380,ko00410,ko00627,ko00640,ko00650,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00062,map00071,map00280,map00310,map00380,map00410,map00627,map00640,map00650,map00930,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00013,M00032,M00085,M00087
Evalue4.02e-87
EggNOG OGsCOG1024@1|root,KOG1680@2759|Eukaryota
EC4.2.1.17
Descriptionenoyl-CoA hydratase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12742Gvermi12742Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1358969..1359832 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12742.t1.stop1Gvermi12742.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1358969..1358971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12742.t1.CDS1Gvermi12742.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1358969..1359832 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12742.t1.exon1Gvermi12742.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1358969..1359832 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12742.t1.start1Gvermi12742.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1359830..1359832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12742.t1Gvermi12742.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1358969..1359832 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12742.t1 ID=Gvermi12742.t1|Name=Gvermi12742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=288bp
MLRTLCLHARRACARSLCQSAGSALPVASRQFEHIHASSDEKIGVIEIHR
PRQMNALSEQTIAEIVDAAQGFERDPTVNVIIVTGSDRVFAAGNDVAELA
ANSYHAARFRRDIGSWTDCISAIKKPIIAAVSGFALGGGCELVMAADIVI
AAEDAQFGQPEVQIGTIPNAGGTQRLVRAVGKAKAMELVLTGRQMSAAEA
ESVGLVTRVAKKGGALKEAKDVAAVIAKHSVPVVAAAKECVNVAFESSLS
QGLLFEKRAFQATFGLDDQKEGMKAFIDQRKPSFKNR*
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spliced messenger RNA

>Gvermi12742.t1 ID=Gvermi12742.t1|Name=Gvermi12742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=864bp|location=Sequence derived from alignment at ScGOVlb_425:1358969..1359832- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGGACGCTGTGCCTCCACGCGCGCCGGGCGTGCGCGCGCTCTCT
CTGCCAGTCGGCCGGCTCCGCGCTGCCCGTGGCGTCGCGGCAGTTTGAGC
ACATTCACGCGTCGAGCGACGAAAAGATCGGCGTCATAGAAATCCACCGC
CCTCGCCAAATGAACGCGCTCAGCGAGCAGACGATCGCCGAGATCGTCGA
CGCCGCGCAGGGCTTTGAGCGCGACCCCACGGTGAACGTCATCATTGTGA
CGGGGAGCGATCGGGTGTTTGCCGCCGGCAACGACGTGGCGGAGCTGGCC
GCCAACAGCTACCACGCCGCGCGCTTCAGGAGGGACATTGGGAGCTGGAC
GGATTGCATCTCCGCGATCAAGAAGCCCATCATCGCGGCTGTGTCCGGGT
TTGCGCTGGGCGGCGGGTGCGAGCTTGTGATGGCGGCTGACATTGTGATT
GCGGCGGAGGACGCGCAGTTTGGACAGCCCGAAGTGCAGATCGGAACGAT
TCCGAATGCGGGCGGCACGCAGCGGCTGGTGCGAGCGGTTGGAAAGGCAA
AGGCCATGGAGCTGGTGCTGACTGGGCGCCAAATGAGCGCCGCGGAGGCC
GAAAGCGTGGGGCTGGTGACGAGGGTGGCCAAGAAGGGCGGGGCGCTGAA
GGAGGCCAAGGACGTGGCCGCCGTCATCGCCAAACACTCGGTGCCCGTGG
TTGCCGCCGCCAAGGAGTGCGTCAACGTGGCGTTTGAGAGCAGCTTGTCG
CAGGGCTTGCTGTTCGAGAAACGCGCTTTCCAGGCCACTTTTGGACTGGA
TGACCAAAAGGAGGGAATGAAGGCGTTTATCGATCAGCGCAAACCGAGCT
TCAAGAACCGATAA
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protein sequence of Gvermi12742.t1

>Gvermi12742.t1 ID=Gvermi12742.t1|Name=Gvermi12742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=288bp
MLRTLCLHARRACARSLCQSAGSALPVASRQFEHIHASSDEKIGVIEIHR
PRQMNALSEQTIAEIVDAAQGFERDPTVNVIIVTGSDRVFAAGNDVAELA
ANSYHAARFRRDIGSWTDCISAIKKPIIAAVSGFALGGGCELVMAADIVI
AAEDAQFGQPEVQIGTIPNAGGTQRLVRAVGKAKAMELVLTGRQMSAAEA
ESVGLVTRVAKKGGALKEAKDVAAVIAKHSVPVVAAAKECVNVAFESSLS
QGLLFEKRAFQATFGLDDQKEGMKAFIDQRKPSFKNR*
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mRNA from alignment at ScGOVlb_425:1358969..1359832-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12742.t1 ID=Gvermi12742.t1|Name=Gvermi12742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=864bp|location=Sequence derived from alignment at ScGOVlb_425:1358969..1359832- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCGGACGCTGTGCCTCCACGCGCGCCGGGCGTGCGCGCGCTCTCT
CTGCCAGTCGGCCGGCTCCGCGCTGCCCGTGGCGTCGCGGCAGTTTGAGC
ACATTCACGCGTCGAGCGACGAAAAGATCGGCGTCATAGAAATCCACCGC
CCTCGCCAAATGAACGCGCTCAGCGAGCAGACGATCGCCGAGATCGTCGA
CGCCGCGCAGGGCTTTGAGCGCGACCCCACGGTGAACGTCATCATTGTGA
CGGGGAGCGATCGGGTGTTTGCCGCCGGCAACGACGTGGCGGAGCTGGCC
GCCAACAGCTACCACGCCGCGCGCTTCAGGAGGGACATTGGGAGCTGGAC
GGATTGCATCTCCGCGATCAAGAAGCCCATCATCGCGGCTGTGTCCGGGT
TTGCGCTGGGCGGCGGGTGCGAGCTTGTGATGGCGGCTGACATTGTGATT
GCGGCGGAGGACGCGCAGTTTGGACAGCCCGAAGTGCAGATCGGAACGAT
TCCGAATGCGGGCGGCACGCAGCGGCTGGTGCGAGCGGTTGGAAAGGCAA
AGGCCATGGAGCTGGTGCTGACTGGGCGCCAAATGAGCGCCGCGGAGGCC
GAAAGCGTGGGGCTGGTGACGAGGGTGGCCAAGAAGGGCGGGGCGCTGAA
GGAGGCCAAGGACGTGGCCGCCGTCATCGCCAAACACTCGGTGCCCGTGG
TTGCCGCCGCCAAGGAGTGCGTCAACGTGGCGTTTGAGAGCAGCTTGTCG
CAGGGCTTGCTGTTCGAGAAACGCGCTTTCCAGGCCACTTTTGGACTGGA
TGACCAAAAGGAGGGAATGAAGGCGTTTATCGATCAGCGCAAACCGAGCT
TCAAGAACCGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1358969..1359832-

>Gvermi12742.t1 ID=Gvermi12742.t1|Name=Gvermi12742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=864bp|location=Sequence derived from alignment at ScGOVlb_425:1358969..1359832- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCGGACGCTGTGCCTCCACGCGCGCCGGGCGTGCGCGCGCTCTCT
CTGCCAGTCGGCCGGCTCCGCGCTGCCCGTGGCGTCGCGGCAGTTTGAGC
ACATTCACGCGTCGAGCGACGAAAAGATCGGCGTCATAGAAATCCACCGC
CCTCGCCAAATGAACGCGCTCAGCGAGCAGACGATCGCCGAGATCGTCGA
CGCCGCGCAGGGCTTTGAGCGCGACCCCACGGTGAACGTCATCATTGTGA
CGGGGAGCGATCGGGTGTTTGCCGCCGGCAACGACGTGGCGGAGCTGGCC
GCCAACAGCTACCACGCCGCGCGCTTCAGGAGGGACATTGGGAGCTGGAC
GGATTGCATCTCCGCGATCAAGAAGCCCATCATCGCGGCTGTGTCCGGGT
TTGCGCTGGGCGGCGGGTGCGAGCTTGTGATGGCGGCTGACATTGTGATT
GCGGCGGAGGACGCGCAGTTTGGACAGCCCGAAGTGCAGATCGGAACGAT
TCCGAATGCGGGCGGCACGCAGCGGCTGGTGCGAGCGGTTGGAAAGGCAA
AGGCCATGGAGCTGGTGCTGACTGGGCGCCAAATGAGCGCCGCGGAGGCC
GAAAGCGTGGGGCTGGTGACGAGGGTGGCCAAGAAGGGCGGGGCGCTGAA
GGAGGCCAAGGACGTGGCCGCCGTCATCGCCAAACACTCGGTGCCCGTGG
TTGCCGCCGCCAAGGAGTGCGTCAACGTGGCGTTTGAGAGCAGCTTGTCG
CAGGGCTTGCTGTTCGAGAAACGCGCTTTCCAGGCCACTTTTGGACTGGA
TGACCAAAAGGAGGGAATGAAGGCGTTTATCGATCAGCGCAAACCGAGCT
TCAAGAACCGATAA
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