Gvermi12748.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12748.t1
Unique NameGvermi12748.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length522
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1370652..1372217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC180CT
Preferred namePDI1
PFAMsThioredoxin,Thioredoxin_6
Max annot lvl2759|Eukaryota
KEGG koko:K01829,ko:K09580,ko:K09584
KEGG Pathwayko04141,map04141
GOsGO:0000003,GO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0004656,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005793,GO:0005886,GO:0006082,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006520,GO:0006575,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009628,GO:0009897,GO:0009966,GO:0009986,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010646,GO:0010941,GO:0012505,GO:0015035,GO:0015036,GO:0015037,GO:0016020,GO:0016043,GO:0016222,GO:0016491,GO:0016667,GO:0016671,GO:0016705,GO:0016706,GO:0016853,GO:0016860,GO:0016864,GO:0018126,GO:0018193,GO:0018208,GO:0018401,GO:0019153,GO:0019221,GO:0019471,GO:0019511,GO:0019538,GO:0019752,GO:0019798,GO:0019941,GO:0019953,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030163,GO:0030433,GO:0031543,GO:0031545,GO:0031974,GO:0032501,GO:0032991,GO:0033554,GO:0034097,GO:0034377,GO:0034378,GO:0034379,GO:0034975,GO:0034976,GO:0035722,GO:0035977,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0036507,GO:0036508,GO:0038155,GO:0042221,GO:0042981,GO:0043062,GO:0043067,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043632,GO:0043687,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0046596,GO:0046598,GO:0046982,GO:0046983,GO:0048518,GO:0048524,GO:0048583,GO:0050789,GO:0050792,GO:0050794,GO:0050839,GO:0050896,GO:0051082,GO:0051213,GO:0051603,GO:0051704,GO:0051716,GO:0055114,GO:0065003,GO:0065005,GO:0065007,GO:0070013,GO:0070482,GO:0070671,GO:0070887,GO:0071310,GO:0071345,GO:0071349,GO:0071453,GO:0071456,GO:0071704,GO:0071825,GO:0071827,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0097006,GO:0097466,GO:0098552,GO:0140096,GO:1900407,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901698,GO:1901700,GO:1902175,GO:1902494,GO:1902531,GO:1902882,GO:1903201,GO:1903900,GO:1903902,GO:1904382,GO:1904587,GO:1990204,GO:2001233,GO:2001242
Evalue5.91e-86
EggNOG OGsCOG0526@1|root,KOG0190@2759|Eukaryota
EC5.3.4.1
Descriptionintramolecular oxidoreductase activity, transposing S-S bonds
COG categoryCO
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12748Gvermi12748Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1370652..1372217 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12748.t1.start1Gvermi12748.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1370652..1370654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12748.t1.CDS1Gvermi12748.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1370652..1372217 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12748.t1.exon1Gvermi12748.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1370652..1372217 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12748.t1.stop1Gvermi12748.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1372215..1372217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12748.t1Gvermi12748.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1370652..1372217 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp
MFSSRLFLLSALAALLFSVSAADDVLKLTKSNFADVIAKEPLVFIKFFAP
WCGHCQSMKEDFEKVATEMKGKAVLADVDATVEEELAKQYNIDGFPTLKL
FSNGEELTDYNGARDKDSIIKFIERATLPPYQALENAEAFTKFTADNSEK
HIIVSAALDSAALSKFKKATFSIRDLMPESFEFAHSDDAATFNIDSMSKG
DVYLLRLESDGTRREMKYDHASDVSLEKFIKAAALPVFQEFTQENAEMYT
ELNMPLVIGFYENCDGEECKALEAIAKKKVDNGKVAFAWVSSVELVSFQE
YVGLKDAAVPICAYSFESDARYLLPEDFKFSGDALETWVDDLIAGKVLPA
RKSEPIPEENEGPVYTVVGDTWDEIVQDTSKDVMIAQVAEWCGHCARLKP
VYAKVAAELKKGGVEHVKMALMEATENDAPEDYKARGFPTIHFFKAGEEQ
KGMEFDGDRSSKGIIEWIQEHTSKKFEFDTSTLGEDPEPEEEEEEDLEDG
GDFDEGDHIEEVEEEDEKTEL*
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spliced messenger RNA

>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at ScGOVlb_425:1370652..1372217+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCATCCCGCCTCTTTCTGCTCTCCGCTCTGGCAGCGCTGCTTTT
CTCCGTCTCCGCCGCCGACGATGTCCTCAAGCTCACCAAGAGCAACTTCG
CTGATGTTATCGCCAAGGAGCCGCTCGTCTTCATCAAATTTTTCGCCCCA
TGGTGCGGCCACTGCCAGTCCATGAAGGAGGATTTTGAGAAAGTTGCAAC
GGAAATGAAAGGCAAGGCCGTGCTAGCCGATGTCGACGCCACCGTGGAAG
AGGAGCTTGCCAAACAATACAACATCGACGGATTTCCAACGCTCAAGCTC
TTCTCAAATGGCGAAGAACTTACAGACTACAACGGCGCTCGTGATAAGGA
TTCCATAATCAAATTCATCGAGCGCGCAACACTGCCGCCGTATCAGGCCC
TTGAAAATGCCGAAGCGTTCACCAAATTCACCGCCGACAACTCCGAGAAG
CATATAATCGTGTCTGCTGCCTTGGATTCGGCCGCCCTCTCAAAGTTCAA
AAAGGCCACCTTCAGCATTCGCGACCTTATGCCGGAATCGTTTGAGTTTG
CTCATTCGGATGACGCTGCCACTTTCAACATCGATTCCATGTCCAAGGGT
GATGTGTATCTGCTGCGTCTGGAATCGGACGGAACTCGTCGCGAAATGAA
GTATGACCACGCCTCGGACGTCTCCCTCGAGAAGTTCATCAAGGCTGCAG
CCCTTCCGGTTTTCCAGGAGTTTACGCAGGAAAACGCCGAAATGTACACT
GAGCTCAACATGCCGCTTGTGATAGGTTTCTACGAGAACTGCGACGGAGA
AGAGTGCAAAGCTCTTGAGGCGATCGCCAAAAAGAAGGTGGACAATGGTA
AGGTGGCGTTCGCCTGGGTCAGTTCTGTTGAACTGGTCAGCTTTCAGGAA
TACGTGGGTCTCAAGGATGCAGCCGTTCCCATTTGTGCCTACTCTTTCGA
GTCTGATGCGCGCTATCTGCTGCCCGAGGACTTCAAGTTTTCAGGAGACG
CGCTTGAGACATGGGTTGATGATTTGATCGCGGGTAAGGTTTTGCCAGCA
CGGAAATCGGAACCGATCCCGGAGGAGAACGAGGGGCCCGTGTACACTGT
GGTGGGAGACACGTGGGATGAAATTGTGCAGGATACTAGCAAGGACGTGA
TGATTGCGCAGGTGGCTGAATGGTGCGGACATTGTGCCAGGCTGAAGCCA
GTCTATGCTAAGGTGGCTGCGGAACTGAAGAAGGGCGGCGTCGAGCATGT
GAAGATGGCATTAATGGAGGCCACTGAAAATGATGCGCCTGAGGATTACA
AGGCACGTGGATTCCCGACCATCCACTTCTTCAAGGCGGGCGAGGAGCAA
AAGGGCATGGAGTTTGATGGCGACCGCTCATCAAAAGGGATCATCGAGTG
GATTCAAGAGCACACATCGAAGAAGTTCGAGTTCGATACTTCCACATTGG
GCGAAGACCCTGAACCTGAAGAGGAGGAAGAGGAGGACTTAGAAGACGGT
GGAGACTTTGACGAGGGAGACCATATAGAGGAAGTAGAAGAGGAGGACGA
GAAGACAGAATTGTAA
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protein sequence of Gvermi12748.t1

>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=522bp
MFSSRLFLLSALAALLFSVSAADDVLKLTKSNFADVIAKEPLVFIKFFAP
WCGHCQSMKEDFEKVATEMKGKAVLADVDATVEEELAKQYNIDGFPTLKL
FSNGEELTDYNGARDKDSIIKFIERATLPPYQALENAEAFTKFTADNSEK
HIIVSAALDSAALSKFKKATFSIRDLMPESFEFAHSDDAATFNIDSMSKG
DVYLLRLESDGTRREMKYDHASDVSLEKFIKAAALPVFQEFTQENAEMYT
ELNMPLVIGFYENCDGEECKALEAIAKKKVDNGKVAFAWVSSVELVSFQE
YVGLKDAAVPICAYSFESDARYLLPEDFKFSGDALETWVDDLIAGKVLPA
RKSEPIPEENEGPVYTVVGDTWDEIVQDTSKDVMIAQVAEWCGHCARLKP
VYAKVAAELKKGGVEHVKMALMEATENDAPEDYKARGFPTIHFFKAGEEQ
KGMEFDGDRSSKGIIEWIQEHTSKKFEFDTSTLGEDPEPEEEEEEDLEDG
GDFDEGDHIEEVEEEDEKTEL*
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mRNA from alignment at ScGOVlb_425:1370652..1372217+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at ScGOVlb_425:1370652..1372217+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCATCCCGCCTCTTTCTGCTCTCCGCTCTGGCAGCGCTGCTTTT
CTCCGTCTCCGCCGCCGACGATGTCCTCAAGCTCACCAAGAGCAACTTCG
CTGATGTTATCGCCAAGGAGCCGCTCGTCTTCATCAAATTTTTCGCCCCA
TGGTGCGGCCACTGCCAGTCCATGAAGGAGGATTTTGAGAAAGTTGCAAC
GGAAATGAAAGGCAAGGCCGTGCTAGCCGATGTCGACGCCACCGTGGAAG
AGGAGCTTGCCAAACAATACAACATCGACGGATTTCCAACGCTCAAGCTC
TTCTCAAATGGCGAAGAACTTACAGACTACAACGGCGCTCGTGATAAGGA
TTCCATAATCAAATTCATCGAGCGCGCAACACTGCCGCCGTATCAGGCCC
TTGAAAATGCCGAAGCGTTCACCAAATTCACCGCCGACAACTCCGAGAAG
CATATAATCGTGTCTGCTGCCTTGGATTCGGCCGCCCTCTCAAAGTTCAA
AAAGGCCACCTTCAGCATTCGCGACCTTATGCCGGAATCGTTTGAGTTTG
CTCATTCGGATGACGCTGCCACTTTCAACATCGATTCCATGTCCAAGGGT
GATGTGTATCTGCTGCGTCTGGAATCGGACGGAACTCGTCGCGAAATGAA
GTATGACCACGCCTCGGACGTCTCCCTCGAGAAGTTCATCAAGGCTGCAG
CCCTTCCGGTTTTCCAGGAGTTTACGCAGGAAAACGCCGAAATGTACACT
GAGCTCAACATGCCGCTTGTGATAGGTTTCTACGAGAACTGCGACGGAGA
AGAGTGCAAAGCTCTTGAGGCGATCGCCAAAAAGAAGGTGGACAATGGTA
AGGTGGCGTTCGCCTGGGTCAGTTCTGTTGAACTGGTCAGCTTTCAGGAA
TACGTGGGTCTCAAGGATGCAGCCGTTCCCATTTGTGCCTACTCTTTCGA
GTCTGATGCGCGCTATCTGCTGCCCGAGGACTTCAAGTTTTCAGGAGACG
CGCTTGAGACATGGGTTGATGATTTGATCGCGGGTAAGGTTTTGCCAGCA
CGGAAATCGGAACCGATCCCGGAGGAGAACGAGGGGCCCGTGTACACTGT
GGTGGGAGACACGTGGGATGAAATTGTGCAGGATACTAGCAAGGACGTGA
TGATTGCGCAGGTGGCTGAATGGTGCGGACATTGTGCCAGGCTGAAGCCA
GTCTATGCTAAGGTGGCTGCGGAACTGAAGAAGGGCGGCGTCGAGCATGT
GAAGATGGCATTAATGGAGGCCACTGAAAATGATGCGCCTGAGGATTACA
AGGCACGTGGATTCCCGACCATCCACTTCTTCAAGGCGGGCGAGGAGCAA
AAGGGCATGGAGTTTGATGGCGACCGCTCATCAAAAGGGATCATCGAGTG
GATTCAAGAGCACACATCGAAGAAGTTCGAGTTCGATACTTCCACATTGG
GCGAAGACCCTGAACCTGAAGAGGAGGAAGAGGAGGACTTAGAAGACGGT
GGAGACTTTGACGAGGGAGACCATATAGAGGAAGTAGAAGAGGAGGACGA
GAAGACAGAATTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1370652..1372217+

>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1566bp|location=Sequence derived from alignment at ScGOVlb_425:1370652..1372217+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCATCCCGCCTCTTTCTGCTCTCCGCTCTGGCAGCGCTGCTTTT
CTCCGTCTCCGCCGCCGACGATGTCCTCAAGCTCACCAAGAGCAACTTCG
CTGATGTTATCGCCAAGGAGCCGCTCGTCTTCATCAAATTTTTCGCCCCA
TGGTGCGGCCACTGCCAGTCCATGAAGGAGGATTTTGAGAAAGTTGCAAC
GGAAATGAAAGGCAAGGCCGTGCTAGCCGATGTCGACGCCACCGTGGAAG
AGGAGCTTGCCAAACAATACAACATCGACGGATTTCCAACGCTCAAGCTC
TTCTCAAATGGCGAAGAACTTACAGACTACAACGGCGCTCGTGATAAGGA
TTCCATAATCAAATTCATCGAGCGCGCAACACTGCCGCCGTATCAGGCCC
TTGAAAATGCCGAAGCGTTCACCAAATTCACCGCCGACAACTCCGAGAAG
CATATAATCGTGTCTGCTGCCTTGGATTCGGCCGCCCTCTCAAAGTTCAA
AAAGGCCACCTTCAGCATTCGCGACCTTATGCCGGAATCGTTTGAGTTTG
CTCATTCGGATGACGCTGCCACTTTCAACATCGATTCCATGTCCAAGGGT
GATGTGTATCTGCTGCGTCTGGAATCGGACGGAACTCGTCGCGAAATGAA
GTATGACCACGCCTCGGACGTCTCCCTCGAGAAGTTCATCAAGGCTGCAG
CCCTTCCGGTTTTCCAGGAGTTTACGCAGGAAAACGCCGAAATGTACACT
GAGCTCAACATGCCGCTTGTGATAGGTTTCTACGAGAACTGCGACGGAGA
AGAGTGCAAAGCTCTTGAGGCGATCGCCAAAAAGAAGGTGGACAATGGTA
AGGTGGCGTTCGCCTGGGTCAGTTCTGTTGAACTGGTCAGCTTTCAGGAA
TACGTGGGTCTCAAGGATGCAGCCGTTCCCATTTGTGCCTACTCTTTCGA
GTCTGATGCGCGCTATCTGCTGCCCGAGGACTTCAAGTTTTCAGGAGACG
CGCTTGAGACATGGGTTGATGATTTGATCGCGGGTAAGGTTTTGCCAGCA
CGGAAATCGGAACCGATCCCGGAGGAGAACGAGGGGCCCGTGTACACTGT
GGTGGGAGACACGTGGGATGAAATTGTGCAGGATACTAGCAAGGACGTGA
TGATTGCGCAGGTGGCTGAATGGTGCGGACATTGTGCCAGGCTGAAGCCA
GTCTATGCTAAGGTGGCTGCGGAACTGAAGAAGGGCGGCGTCGAGCATGT
GAAGATGGCATTAATGGAGGCCACTGAAAATGATGCGCCTGAGGATTACA
AGGCACGTGGATTCCCGACCATCCACTTCTTCAAGGCGGGCGAGGAGCAA
AAGGGCATGGAGTTTGATGGCGACCGCTCATCAAAAGGGATCATCGAGTG
GATTCAAGAGCACACATCGAAGAAGTTCGAGTTCGATACTTCCACATTGG
GCGAAGACCCTGAACCTGAAGAGGAGGAAGAGGAGGACTTAGAAGACGGT
GGAGACTTTGACGAGGGAGACCATATAGAGGAAGTAGAAGAGGAGGACGA
GAAGACAGAATTGTAA
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