Gvermi12902.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12902.t1
Unique NameGvermi12902.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length293
Homology
BLAST of Gvermi12902.t1 vs. uniprot
Match: A0A2V3J1R2_9FLOR (Ribosomal protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1R2_9FLOR)

HSP 1 Score: 410 bits (1053), Expect = 7.010e-142
Identity = 205/293 (69.97%), Postives = 243/293 (82.94%), Query Frame = 0
Query:    1 MLASFRSLLRRVPPPIYVSHSLRYATLRNASPPEDETE---RPLSRWRRLKRERRAAPTPANRLKHQYDRRAQYDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLDRKTLMQQVIE 290
            MLAS RS   R P    ++HS RYATL   +PP+  +E   +PLSRW+RLKRERRAAPTP NR KHQ+DR+  YDL TALKHVRA+QWA+FDE+LELVLRL IDPRHAD NLRGVI LPHGTGR  KVAV+A DE A +A+AAGADLVG  ELI+KI  +KG+ +KGF ACVAVP++F KVAA+LG+ILGPKGL+PSPKT+TVTDD+ENI++E+KRGRL YRTDK GNMHLHVGKLSFPDDAL+ENT+ A++GIL VRPAS+KGKY L A MCSSMGPSV LD + L ++ +E
Sbjct:    1 MLASLRSHFARPPALHRLAHSFRYATLTKTAPPDPSSEASNQPLSRWQRLKRERRAAPTPLNRTKHQFDRQEAYDLHTALKHVRAAQWAQFDETLELVLRLKIDPRHADHNLRGVIRLPHGTGRVQKVAVLASDEQARQAIAAGADLVGGEELIDKIVKEKGRPIKGFEACVAVPRLFGKVAARLGKILGPKGLMPSPKTETVTDDIENIIKEVKRGRLSYRTDKAGNMHLHVGKLSFPDDALIENTLAAMRGILEVRPASVKGKYVLKAIMCSSMGPSVNLDHQLLTRKALE 293          
BLAST of Gvermi12902.t1 vs. uniprot
Match: R7QM01_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM01_CHOCR)

HSP 1 Score: 263 bits (672), Expect = 7.240e-84
Identity = 139/247 (56.28%), Postives = 176/247 (71.26%), Query Frame = 0
Query:   42 SRWRRLKRERRAAPTPANRLKHQYDRRAQYDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLDRKTLMQQV 288
            SRW+RLKR+RRA  TPANR  +++DR A   L  AL HVRA+ WA FDESLELVLRLNIDPR A +N+RG   LPHGTGR  +VA  A+   A+ A AAGAD VGA++L+ +IA D+ K+LKGF ACVAVP++   VAA++G +LGPKGL+P+ K  TV  DV  IV  +K G++ +RTD+ GN+HL VGKLSF D  L++N   A   I+  RP ++K KY   A +CSSMGPSVKLD   L + V
Sbjct:   55 SRWQRLKRKRRAERTPANRTAYRFDRAAPAPLPAALAHVRAAAWAAFDESLELVLRLNIDPRKAAENIRGAALLPHGTGRPARVAAFAEGIDADAARAAGADRVGADDLVAQIAADRAKSLKGFHACVAVPELLPTVAARVGMLLGPKGLMPAKKDGTVGPDVAQIVTRLKSGQIRFRTDRAGNVHLIVGKLSFADHLLIDNVCAATAAIMDARPHTVKKKYLEKAFLCSSMGPSVKLDLVQLARAV 301          
BLAST of Gvermi12902.t1 vs. uniprot
Match: A0A7X7Y798_9FIRM (50S ribosomal protein L1 n=1 Tax=Bacilli bacterium TaxID=1903720 RepID=A0A7X7Y798_9FIRM)

HSP 1 Score: 204 bits (520), Expect = 6.220e-62
Identity = 106/215 (49.30%), Postives = 144/215 (66.98%), Query Frame = 0
Query:   66 DRRAQYDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLD 280
            DR   YD+  A++ V+ +  A FDE++E+  RL +DP+HADQN+R  + LPHGTG+  +V V A  E  + A AAGAD +G  E I+KI ND       F   VA P M  +V  KLGR+LGPKGL+P+PKT TVT D+E  V+EIK G++ +R DK GN+H+ VGK+SF DD L+EN    ++ I+ V+P + KGKY  N S+ S+MGP +KLD
Sbjct:   17 DRSKSYDIREAVQLVKKTATANFDETVEIAFRLGVDPKHADQNIRSAVVLPHGTGKTQRVLVFAKGEKVKEAEAAGADYIGDEETIQKI-NDGWFD---FDVVVATPDMMAEVG-KLGRVLGPKGLMPNPKTGTVTFDIEKAVKEIKAGKVEFRVDKSGNIHVPVGKVSFEDDQLIENIETMIETIIRVKPQTSKGKYIRNVSISSTMGPGIKLD 226          
BLAST of Gvermi12902.t1 vs. uniprot
Match: A0A3D6D8N7_9BACT (50S ribosomal protein L1 n=2 Tax=Thermotogae bacterium TaxID=2053689 RepID=A0A3D6D8N7_9BACT)

HSP 1 Score: 203 bits (517), Expect = 1.760e-61
Identity = 109/222 (49.10%), Postives = 146/222 (65.77%), Query Frame = 0
Query:   59 NRLKHQYDRRAQYDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLD 280
            N+++   DR   Y L  A+K V+ +  AKFDE++EL ++  IDPR +DQ +R  I LPHGTG+  KV V A  E A+ A  AGAD VGA +L+EKI  +       F   +A P M  ++  +LGRILGPKGL+PSPK+ TVT+D+ N V+E K GR+  RTDK GN+HL VGK SF D+ L EN I A++ I  +RPA++KGK F    + S+MGP +KLD
Sbjct:    9 NQVRALVDRTRYYSLDEAVKLVKETANAKFDETIELHIKTGIDPRKSDQQIRSSISLPHGTGKSVKVLVFAKGEKAKEAEEAGADYVGAEDLVEKIEKEG---FLDFDVAIATPDMM-RIIGRLGRILGPKGLMPSPKSGTVTEDIANAVKEFKAGRIEVRTDKTGNIHLPVGKRSFDDEKLKENIISAIQQIEKLRPAAMKGKLFQKVVLASTMGPGIKLD 226          
BLAST of Gvermi12902.t1 vs. uniprot
Match: UPI00047E4AA4 (50S ribosomal protein L1 n=1 Tax=Haploplasma modicum TaxID=2150 RepID=UPI00047E4AA4)

HSP 1 Score: 201 bits (510), Expect = 2.060e-60
Identity = 108/218 (49.54%), Postives = 144/218 (66.06%), Query Frame = 0
Query:   64 QYDRRAQYDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLDR 281
            Q DR  +Y L  A + V+ +   KFD S+E+  RLN+DPR A+QNLRG I LPHGTG+  KV VIA  E A+ A  AGAD VG  +LI++I+    K    F   VA P M  ++  KLGR+LGPKGL+P+PKT TVT DV N V+EIK G++ YR DK GN+H  VGK+SF  + L EN     + I+ ++P+++KG Y  N ++ SSMGP +K+DR
Sbjct:   13 QVDRLKEYKLLEATELVKKTSTVKFDASVEVAFRLNLDPRKAEQNLRGAIVLPHGTGKVSKVVVIAQGEKAKEAKDAGADFVGDKDLIDQIS----KGWFDFDVIVATPDMMAQLG-KLGRVLGPKGLMPNPKTGTVTLDVANAVKEIKAGKIEYRVDKVGNIHASVGKVSFTKEQLAENIHTLFERIVQIKPSTVKGTYLKNLTVTSSMGPGIKIDR 225          
BLAST of Gvermi12902.t1 vs. uniprot
Match: UPI00047B8447 (50S ribosomal protein L1 n=1 Tax=Haploplasma axanthum TaxID=29552 RepID=UPI00047B8447)

HSP 1 Score: 201 bits (510), Expect = 2.130e-60
Identity = 109/219 (49.77%), Postives = 143/219 (65.30%), Query Frame = 0
Query:   66 DRRAQYDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLDRKTL 284
            D+  +YDL  A K V+ +   KFD ++E+  RLN+DPR A+QNLRG I LPHGTG+  +V VIA  E A+ A AAGAD VG  ++IEKI+    K    F   VA P M  ++  KLGR+LGPKGL+P+PKT TVT DV N V EIK G++ YR DK GN+H  VGK+SF +  L EN     + ++ +RP ++KG Y  N ++ SSMGP VK+ R  L
Sbjct:   16 DKTKEYDLLDATKLVKKTSTVKFDATVEVAFRLNLDPRKAEQNLRGAIVLPHGTGKVSRVVVIAQGEKAKEAQAAGADFVGDADIIEKIS----KGWFDFDVIVATPDMMAQLG-KLGRVLGPKGLMPNPKTGTVTMDVANAVNEIKAGKIEYRVDKVGNIHSSVGKVSFTEAQLAENIHTLYEKLVQLRPNTVKGTYIRNVTVSSSMGPGVKVSRDNL 229          
BLAST of Gvermi12902.t1 vs. uniprot
Match: H9UCM6_FERPD (50S ribosomal protein L1 n=4 Tax=Fervidobacterium TaxID=2422 RepID=H9UCM6_FERPD)

HSP 1 Score: 201 bits (510), Expect = 2.200e-60
Identity = 109/226 (48.23%), Postives = 147/226 (65.04%), Query Frame = 0
Query:   59 NRLKHQYDRRAQYDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLDRKTL 284
            N ++   DR   Y L  A++ V+ +  AKFDE++EL ++ NID R ++QN+R  I LPHGTG+  +V V A  + AE A  AGAD VGA EL +KIAN+       F   +A P M  KV  KLG++LGP+GL+P+PKT TVTDDV + V E K+G++  RTDK GN+H+ VGK SF  + L EN   A + ILA+RPA +KG +   A + S+MGP +KLD  TL
Sbjct:    9 NEVRKLVDREKSYPLDEAVELVKKTATAKFDETVELHVKTNIDYRKSEQNIRSTISLPHGTGKTVRVLVFAKGDKAEEAKQAGADYVGAEELADKIANEG---FFDFDVAIATPDMM-KVIGKLGKVLGPRGLMPNPKTGTVTDDVASAVSEFKKGKVEVRTDKTGNIHIPVGKASFDSEKLKENIKSAYEQILALRPAGVKGNFIKKAVIASTMGPGIKLDLNTL 230          
BLAST of Gvermi12902.t1 vs. uniprot
Match: A0A7V0IGL9_9BACT (50S ribosomal protein L1 n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A7V0IGL9_9BACT)

HSP 1 Score: 199 bits (507), Expect = 3.660e-60
Identity = 105/216 (48.61%), Postives = 143/216 (66.20%), Query Frame = 0
Query:   65 YDRRAQYDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLD 280
            YDR   Y L  AL+ V+   +AKFDE++++ +RLN+DPRHADQ +RG + LPHGTG+  +V V A  + A+ A  AGAD VGA +LIEKI    G T   F   +A P M   V  +LG+ILGP+GL+P+PK  TVT DV   V+E K G++ +R DK GN+H  +GK+SF  D L EN +  V  I+  RPAS+KG+Y  N ++ S+MGP V++D
Sbjct:    1 YDRLKPYPLREALELVKKMAYAKFDETVDMAIRLNVDPRHADQMVRGTVVLPHGTGKTVRVLVFAKGDKAKEAEEAGADFVGAEDLIEKIQG--GWT--DFDVAIATPDMMPMVG-RLGKILGPRGLMPNPKVGTVTQDVAKAVKEAKAGKIQFRVDKAGNIHAPIGKVSFDVDKLTENAMTLVDAIVKARPASVKGQYVKNITVSSTMGPGVRVD 211          
BLAST of Gvermi12902.t1 vs. uniprot
Match: U4KLL2_ALTPJ (50S ribosomal protein L1 n=1 Tax=Alteracholeplasma palmae (strain ATCC 49389 / J233) TaxID=1318466 RepID=U4KLL2_ALTPJ)

HSP 1 Score: 199 bits (505), Expect = 1.030e-59
Identity = 105/219 (47.95%), Postives = 142/219 (64.84%), Query Frame = 0
Query:   66 DRRAQYDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLDRKTL 284
            D+   Y  S A++ V+ +   KFD ++E+  RLN+DPR A+QNLRG I LPHGTG+  +V VIA  E A+ A AAGAD VG +ELIEKI    GK    F   VA P M  K+  KLGR+LGPKGL+P+PKT TVT DV   V+EIK G++ YR DK GN+   VGK+SF    L EN     + ++ ++PA++KG Y  N ++ S+MGP +++D   +
Sbjct:   15 DKNQVYAASEAMELVKKTSTVKFDATVEIAFRLNLDPRKAEQNLRGAIVLPHGTGKVSRVVVIAQGEKAKEAEAAGADFVGDSELIEKI----GKGWFEFDVMVATPDMMAKLG-KLGRVLGPKGLMPNPKTGTVTTDVAKAVQEIKNGKIEYRVDKVGNIQAPVGKVSFTASQLAENVATLYEQLVRIKPATVKGTYIKNITVSSTMGPGIRIDENKI 228          
BLAST of Gvermi12902.t1 vs. uniprot
Match: A0A7W2B8G7_9PROT (50S ribosomal protein L1 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7W2B8G7_9PROT)

HSP 1 Score: 199 bits (505), Expect = 1.130e-59
Identity = 104/216 (48.15%), Postives = 146/216 (67.59%), Query Frame = 0
Query:   71 YDLSTALKHVRASQWAKFDESLELVLRLNIDPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANELIEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTVTDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKGILAVRPASLKGKYFLNASMCSSMGPSVKLDRKTLMQ 286
            YDL TA+  V+A   AKFDE++EL + +N+DPR ADQNLRG++ LPHGTG+  +VAV A DE A+ A+AAGAD+VGA +L+E+I   +G+    F  C+A P M   +  +LG+ILG KGL+P+PK  TVT DV   V+  K G++ YRT+K G +H  +GK SF +DAL++N    +  ++  RPAS KG +   A + S+MGPSV L  + + Q
Sbjct:   21 YDLKTAIATVKARATAKFDETIELSMNMNVDPRKADQNLRGMVSLPHGTGKTVRVAVFARDEKAKDALAAGADIVGAEDLMERI--QQGEI--NFDRCIATPDMMA-IVGRLGKILGTKGLMPNPKLGTVTPDVAGAVKAAKAGQVEYRTEKTGIIHAGIGKASFSEDALLDNAKALISIVMKSRPASAKGVFLKKAHLSSTMGPSVTLSNEEISQ 231          
The following BLAST results are available for this feature:
BLAST of Gvermi12902.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1R2_9FLOR7.010e-14269.97Ribosomal protein n=1 Tax=Gracilariopsis chorda Ta... [more]
R7QM01_CHOCR7.240e-8456.28Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7X7Y798_9FIRM6.220e-6249.3050S ribosomal protein L1 n=1 Tax=Bacilli bacterium... [more]
A0A3D6D8N7_9BACT1.760e-6149.1050S ribosomal protein L1 n=2 Tax=Thermotogae bacte... [more]
UPI00047E4AA42.060e-6049.5450S ribosomal protein L1 n=1 Tax=Haploplasma modic... [more]
UPI00047B84472.130e-6049.7750S ribosomal protein L1 n=1 Tax=Haploplasma axant... [more]
H9UCM6_FERPD2.200e-6048.2350S ribosomal protein L1 n=4 Tax=Fervidobacterium ... [more]
A0A7V0IGL9_9BACT3.660e-6048.6150S ribosomal protein L1 n=1 Tax=candidate divisio... [more]
U4KLL2_ALTPJ1.030e-5947.9550S ribosomal protein L1 n=1 Tax=Alteracholeplasma... [more]
A0A7W2B8G7_9PROT1.130e-5948.1550S ribosomal protein L1 n=1 Tax=Alphaproteobacter... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.190.20coord: 74..280
e-value: 9.2E-69
score: 233.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..61
NoneNo IPR availablePANTHERPTHR3642754S RIBOSOMAL PROTEIN L1, MITOCHONDRIALcoord: 48..286
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 85..275
e-value: 2.9E-41
score: 141.5
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinCDDcd00403Ribosomal_L1coord: 73..279
e-value: 2.99168E-61
score: 191.243
IPR005878Ribosomal protein L1, bacterial-typeTIGRFAMTIGR01169TIGR01169coord: 60..283
e-value: 1.1E-73
score: 245.3
IPR005878Ribosomal protein L1, bacterial-typeHAMAPMF_01318_BRibosomal_L1_Bcoord: 45..284
score: 33.996849
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 118..214
e-value: 9.2E-69
score: 233.1
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 62..280

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1996084..1996962 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12902.t1Gvermi12902.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1996084..1996962 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12902.t1 ID=Gvermi12902.t1|Name=Gvermi12902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=293bp
MLASFRSLLRRVPPPIYVSHSLRYATLRNASPPEDETERPLSRWRRLKRE
RRAAPTPANRLKHQYDRRAQYDLSTALKHVRASQWAKFDESLELVLRLNI
DPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANEL
IEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTV
TDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKG
ILAVRPASLKGKYFLNASMCSSMGPSVKLDRKTLMQQVIEAQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028364Ribosomal_L1/biogenesis
IPR005878Ribosom_L1_bac-type
IPR016095Ribosomal_L1_3-a/b-sand
IPR023674Ribosomal_L1-like