Gvermi12902.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12902.t1
Unique NameGvermi12902.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1996084..1996962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1278311.AUAL01000018_gene211
Preferred namerplA
PFAMsRibosomal_L1
Max annot lvl544448|Tenericutes
KEGG koko:K02863
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue7.16e-61
EggNOG OGsCOG0081@1|root,COG0081@2|Bacteria,3WSV7@544448|Tenericutes
DescriptionBinds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12902Gvermi12902Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1996084..1996962 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12902.t1.start1Gvermi12902.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1996084..1996086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12902.t1.CDS1Gvermi12902.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1996084..1996962 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12902.t1.exon1Gvermi12902.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1996084..1996962 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12902.t1.stop1Gvermi12902.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1996960..1996962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12902.t1Gvermi12902.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1996084..1996962 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12902.t1 ID=Gvermi12902.t1|Name=Gvermi12902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=293bp
MLASFRSLLRRVPPPIYVSHSLRYATLRNASPPEDETERPLSRWRRLKRE
RRAAPTPANRLKHQYDRRAQYDLSTALKHVRASQWAKFDESLELVLRLNI
DPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANEL
IEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTV
TDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKG
ILAVRPASLKGKYFLNASMCSSMGPSVKLDRKTLMQQVIEAQ*
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spliced messenger RNA

>Gvermi12902.t1 ID=Gvermi12902.t1|Name=Gvermi12902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=879bp|location=Sequence derived from alignment at ScGOVlb_425:1996084..1996962+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCTTCCTTTCGCTCACTCTTACGGCGTGTCCCGCCTCCGATCTA
CGTTTCGCACAGTCTGCGCTACGCTACTCTGAGAAATGCATCACCGCCAG
AAGACGAAACAGAACGCCCTCTCAGTCGATGGAGGCGCCTGAAGCGTGAA
AGACGGGCTGCTCCGACCCCCGCGAATCGTTTGAAACACCAGTATGATCG
ACGCGCCCAGTATGATCTCTCCACCGCTTTGAAGCATGTTCGAGCTTCTC
AATGGGCAAAATTCGATGAATCTTTAGAGCTGGTGCTGCGCCTCAACATT
GATCCACGTCATGCGGATCAGAATCTGCGAGGTGTGATCCATCTCCCGCA
TGGCACTGGTAGATTTGATAAAGTGGCCGTCATTGCGGATGATGAACTAG
CCGAGCGCGCCGTTGCGGCCGGAGCTGATCTAGTAGGTGCGAACGAGCTC
ATCGAAAAGATCGCCAACGACAAGGGCAAAACTCTGAAGGGCTTCGCCGC
TTGTGTAGCTGTACCGCAGATGTTTGAAAAGGTCGCTGCAAAGCTTGGCA
GAATACTTGGACCGAAGGGACTTCTGCCCAGCCCAAAGACGAAGACTGTG
ACGGACGACGTCGAGAACATCGTCAGAGAAATCAAGCGCGGTCGCCTTTG
TTACCGAACAGACAAGGAAGGAAACATGCATCTTCACGTGGGAAAGCTCA
GTTTTCCTGACGATGCTCTCGTTGAAAACACAATTGAAGCAGTCAAGGGC
ATTCTCGCTGTGAGACCTGCTTCGTTGAAAGGAAAATATTTTCTGAACGC
CAGCATGTGTTCTAGCATGGGGCCGTCTGTCAAGTTAGATCGGAAAACTC
TTATGCAGCAGGTAATAGAGGCTCAGTAA
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protein sequence of Gvermi12902.t1

>Gvermi12902.t1 ID=Gvermi12902.t1|Name=Gvermi12902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=293bp
MLASFRSLLRRVPPPIYVSHSLRYATLRNASPPEDETERPLSRWRRLKRE
RRAAPTPANRLKHQYDRRAQYDLSTALKHVRASQWAKFDESLELVLRLNI
DPRHADQNLRGVIHLPHGTGRFDKVAVIADDELAERAVAAGADLVGANEL
IEKIANDKGKTLKGFAACVAVPQMFEKVAAKLGRILGPKGLLPSPKTKTV
TDDVENIVREIKRGRLCYRTDKEGNMHLHVGKLSFPDDALVENTIEAVKG
ILAVRPASLKGKYFLNASMCSSMGPSVKLDRKTLMQQVIEAQ*
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mRNA from alignment at ScGOVlb_425:1996084..1996962+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12902.t1 ID=Gvermi12902.t1|Name=Gvermi12902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=879bp|location=Sequence derived from alignment at ScGOVlb_425:1996084..1996962+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGCTTCCTTTCGCTCACTCTTACGGCGTGTCCCGCCTCCGATCTA
CGTTTCGCACAGTCTGCGCTACGCTACTCTGAGAAATGCATCACCGCCAG
AAGACGAAACAGAACGCCCTCTCAGTCGATGGAGGCGCCTGAAGCGTGAA
AGACGGGCTGCTCCGACCCCCGCGAATCGTTTGAAACACCAGTATGATCG
ACGCGCCCAGTATGATCTCTCCACCGCTTTGAAGCATGTTCGAGCTTCTC
AATGGGCAAAATTCGATGAATCTTTAGAGCTGGTGCTGCGCCTCAACATT
GATCCACGTCATGCGGATCAGAATCTGCGAGGTGTGATCCATCTCCCGCA
TGGCACTGGTAGATTTGATAAAGTGGCCGTCATTGCGGATGATGAACTAG
CCGAGCGCGCCGTTGCGGCCGGAGCTGATCTAGTAGGTGCGAACGAGCTC
ATCGAAAAGATCGCCAACGACAAGGGCAAAACTCTGAAGGGCTTCGCCGC
TTGTGTAGCTGTACCGCAGATGTTTGAAAAGGTCGCTGCAAAGCTTGGCA
GAATACTTGGACCGAAGGGACTTCTGCCCAGCCCAAAGACGAAGACTGTG
ACGGACGACGTCGAGAACATCGTCAGAGAAATCAAGCGCGGTCGCCTTTG
TTACCGAACAGACAAGGAAGGAAACATGCATCTTCACGTGGGAAAGCTCA
GTTTTCCTGACGATGCTCTCGTTGAAAACACAATTGAAGCAGTCAAGGGC
ATTCTCGCTGTGAGACCTGCTTCGTTGAAAGGAAAATATTTTCTGAACGC
CAGCATGTGTTCTAGCATGGGGCCGTCTGTCAAGTTAGATCGGAAAACTC
TTATGCAGCAGGTAATAGAGGCTCAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1996084..1996962+

>Gvermi12902.t1 ID=Gvermi12902.t1|Name=Gvermi12902.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=879bp|location=Sequence derived from alignment at ScGOVlb_425:1996084..1996962+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGCTTCCTTTCGCTCACTCTTACGGCGTGTCCCGCCTCCGATCTA
CGTTTCGCACAGTCTGCGCTACGCTACTCTGAGAAATGCATCACCGCCAG
AAGACGAAACAGAACGCCCTCTCAGTCGATGGAGGCGCCTGAAGCGTGAA
AGACGGGCTGCTCCGACCCCCGCGAATCGTTTGAAACACCAGTATGATCG
ACGCGCCCAGTATGATCTCTCCACCGCTTTGAAGCATGTTCGAGCTTCTC
AATGGGCAAAATTCGATGAATCTTTAGAGCTGGTGCTGCGCCTCAACATT
GATCCACGTCATGCGGATCAGAATCTGCGAGGTGTGATCCATCTCCCGCA
TGGCACTGGTAGATTTGATAAAGTGGCCGTCATTGCGGATGATGAACTAG
CCGAGCGCGCCGTTGCGGCCGGAGCTGATCTAGTAGGTGCGAACGAGCTC
ATCGAAAAGATCGCCAACGACAAGGGCAAAACTCTGAAGGGCTTCGCCGC
TTGTGTAGCTGTACCGCAGATGTTTGAAAAGGTCGCTGCAAAGCTTGGCA
GAATACTTGGACCGAAGGGACTTCTGCCCAGCCCAAAGACGAAGACTGTG
ACGGACGACGTCGAGAACATCGTCAGAGAAATCAAGCGCGGTCGCCTTTG
TTACCGAACAGACAAGGAAGGAAACATGCATCTTCACGTGGGAAAGCTCA
GTTTTCCTGACGATGCTCTCGTTGAAAACACAATTGAAGCAGTCAAGGGC
ATTCTCGCTGTGAGACCTGCTTCGTTGAAAGGAAAATATTTTCTGAACGC
CAGCATGTGTTCTAGCATGGGGCCGTCTGTCAAGTTAGATCGGAAAACTC
TTATGCAGCAGGTAATAGAGGCTCAGTAA
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