Gvermi12662.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12662.t1
Unique NameGvermi12662.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:147074..148192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1394178.AWOO02000016_gene6846
PFAMsAcetyltransf_1
Max annot lvl201174|Actinobacteria
Evalue1.52e-32
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,2I9Y3@201174|Actinobacteria,4ER9I@85012|Streptosporangiales
DescriptionAcetyltransferase (GNAT) domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12662Gvermi12662Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 147074..148192 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12662.t1.stop1Gvermi12662.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 147074..147076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12662.t1.CDS1Gvermi12662.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 147074..148192 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12662.t1.exon1Gvermi12662.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 147074..148192 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12662.t1.start1Gvermi12662.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 148190..148192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12662.t1Gvermi12662.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 147074..148192 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12662.t1 ID=Gvermi12662.t1|Name=Gvermi12662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=373bp
MHRCIARGPSKALRRFGAGRHVSGPPAVHPQITPAHPIMKSETKTQNEPK
AHASLLSRIGNVLHRHSHCEQKKTAQAAPPAQETPEQKAHESTPTAADAP
PETAAEPAVKTATETTEPPAKATEDITPELSSKTAGPQQQEAAREVASTP
AETPAPAQEAAATTPRTVVVHNDPKDIEQLAQTLASAFEDDPLINYLHGP
HAKHVNKKCLIFERTVLRAELSRPKGQTTIHVANDNSCVAVWHHVGHWKI
SGLYMAKFMVALFRTFGLRALLIASAMREVEDAHPKEPHMHLFIIGTHKD
HQGKGIGSTVISEMLKHCDLERLPAYLESSNQHNLSFYKRHGFELIQQIQ
GARANCPPIFTMWREPRPIQKQ*
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spliced messenger RNA

>Gvermi12662.t1 ID=Gvermi12662.t1|Name=Gvermi12662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at ScGOVlb_425:147074..148192- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCTGCATCGCTCGAGGCCCATCTAAGGCGCTGCGCCGCTTCGG
CGCCGGGCGCCACGTCTCCGGTCCGCCTGCAGTTCACCCCCAAATCACCC
CTGCCCACCCCATCATGAAGTCAGAGACAAAGACACAGAACGAACCAAAG
GCCCACGCGTCGTTGCTCTCACGGATCGGCAACGTTCTCCATCGTCACTC
GCACTGTGAACAGAAAAAGACAGCTCAAGCTGCGCCGCCTGCGCAAGAGA
CACCTGAGCAAAAAGCACATGAATCCACGCCGACCGCTGCCGACGCTCCG
CCAGAGACCGCCGCAGAGCCCGCTGTGAAGACCGCTACCGAGACTACGGA
ACCCCCTGCAAAAGCCACGGAAGATATCACACCGGAGCTCTCCTCGAAAA
CCGCTGGTCCCCAGCAACAAGAAGCTGCACGTGAAGTTGCGTCTACCCCT
GCAGAGACCCCCGCTCCGGCGCAGGAAGCAGCTGCGACCACCCCGCGCAC
GGTGGTCGTTCACAACGACCCGAAGGACATTGAACAGCTTGCCCAAACGC
TAGCATCGGCATTCGAGGATGACCCGCTCATCAACTACCTCCACGGCCCG
CATGCCAAACACGTGAACAAAAAGTGCCTCATCTTCGAGCGCACCGTGCT
TCGCGCAGAGCTCTCCCGCCCCAAGGGACAGACCACCATCCATGTTGCAA
ACGACAACAGTTGTGTGGCTGTGTGGCACCACGTGGGGCACTGGAAGATA
TCGGGCTTGTACATGGCCAAATTCATGGTAGCCCTGTTCCGAACATTTGG
GCTGCGGGCGCTGCTCATCGCTTCGGCCATGCGCGAAGTTGAGGACGCTC
ATCCGAAGGAGCCCCATATGCACCTCTTTATCATAGGAACCCATAAAGAC
CATCAAGGAAAAGGGATTGGAAGCACCGTGATATCGGAGATGTTGAAGCA
TTGTGACCTTGAACGTCTGCCAGCGTACTTGGAATCTTCAAACCAACACA
ATTTATCGTTTTACAAAAGGCACGGCTTTGAGCTCATTCAACAAATCCAA
GGAGCTCGAGCGAATTGCCCCCCAATCTTCACCATGTGGCGAGAGCCGCG
TCCCATTCAAAAGCAGTAG
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protein sequence of Gvermi12662.t1

>Gvermi12662.t1 ID=Gvermi12662.t1|Name=Gvermi12662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=373bp
MHRCIARGPSKALRRFGAGRHVSGPPAVHPQITPAHPIMKSETKTQNEPK
AHASLLSRIGNVLHRHSHCEQKKTAQAAPPAQETPEQKAHESTPTAADAP
PETAAEPAVKTATETTEPPAKATEDITPELSSKTAGPQQQEAAREVASTP
AETPAPAQEAAATTPRTVVVHNDPKDIEQLAQTLASAFEDDPLINYLHGP
HAKHVNKKCLIFERTVLRAELSRPKGQTTIHVANDNSCVAVWHHVGHWKI
SGLYMAKFMVALFRTFGLRALLIASAMREVEDAHPKEPHMHLFIIGTHKD
HQGKGIGSTVISEMLKHCDLERLPAYLESSNQHNLSFYKRHGFELIQQIQ
GARANCPPIFTMWREPRPIQKQ*
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mRNA from alignment at ScGOVlb_425:147074..148192-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12662.t1 ID=Gvermi12662.t1|Name=Gvermi12662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at ScGOVlb_425:147074..148192- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCGCTGCATCGCTCGAGGCCCATCTAAGGCGCTGCGCCGCTTCGG
CGCCGGGCGCCACGTCTCCGGTCCGCCTGCAGTTCACCCCCAAATCACCC
CTGCCCACCCCATCATGAAGTCAGAGACAAAGACACAGAACGAACCAAAG
GCCCACGCGTCGTTGCTCTCACGGATCGGCAACGTTCTCCATCGTCACTC
GCACTGTGAACAGAAAAAGACAGCTCAAGCTGCGCCGCCTGCGCAAGAGA
CACCTGAGCAAAAAGCACATGAATCCACGCCGACCGCTGCCGACGCTCCG
CCAGAGACCGCCGCAGAGCCCGCTGTGAAGACCGCTACCGAGACTACGGA
ACCCCCTGCAAAAGCCACGGAAGATATCACACCGGAGCTCTCCTCGAAAA
CCGCTGGTCCCCAGCAACAAGAAGCTGCACGTGAAGTTGCGTCTACCCCT
GCAGAGACCCCCGCTCCGGCGCAGGAAGCAGCTGCGACCACCCCGCGCAC
GGTGGTCGTTCACAACGACCCGAAGGACATTGAACAGCTTGCCCAAACGC
TAGCATCGGCATTCGAGGATGACCCGCTCATCAACTACCTCCACGGCCCG
CATGCCAAACACGTGAACAAAAAGTGCCTCATCTTCGAGCGCACCGTGCT
TCGCGCAGAGCTCTCCCGCCCCAAGGGACAGACCACCATCCATGTTGCAA
ACGACAACAGTTGTGTGGCTGTGTGGCACCACGTGGGGCACTGGAAGATA
TCGGGCTTGTACATGGCCAAATTCATGGTAGCCCTGTTCCGAACATTTGG
GCTGCGGGCGCTGCTCATCGCTTCGGCCATGCGCGAAGTTGAGGACGCTC
ATCCGAAGGAGCCCCATATGCACCTCTTTATCATAGGAACCCATAAAGAC
CATCAAGGAAAAGGGATTGGAAGCACCGTGATATCGGAGATGTTGAAGCA
TTGTGACCTTGAACGTCTGCCAGCGTACTTGGAATCTTCAAACCAACACA
ATTTATCGTTTTACAAAAGGCACGGCTTTGAGCTCATTCAACAAATCCAA
GGAGCTCGAGCGAATTGCCCCCCAATCTTCACCATGTGGCGAGAGCCGCG
TCCCATTCAAAAGCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:147074..148192-

>Gvermi12662.t1 ID=Gvermi12662.t1|Name=Gvermi12662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1119bp|location=Sequence derived from alignment at ScGOVlb_425:147074..148192- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATCGCTGCATCGCTCGAGGCCCATCTAAGGCGCTGCGCCGCTTCGG
CGCCGGGCGCCACGTCTCCGGTCCGCCTGCAGTTCACCCCCAAATCACCC
CTGCCCACCCCATCATGAAGTCAGAGACAAAGACACAGAACGAACCAAAG
GCCCACGCGTCGTTGCTCTCACGGATCGGCAACGTTCTCCATCGTCACTC
GCACTGTGAACAGAAAAAGACAGCTCAAGCTGCGCCGCCTGCGCAAGAGA
CACCTGAGCAAAAAGCACATGAATCCACGCCGACCGCTGCCGACGCTCCG
CCAGAGACCGCCGCAGAGCCCGCTGTGAAGACCGCTACCGAGACTACGGA
ACCCCCTGCAAAAGCCACGGAAGATATCACACCGGAGCTCTCCTCGAAAA
CCGCTGGTCCCCAGCAACAAGAAGCTGCACGTGAAGTTGCGTCTACCCCT
GCAGAGACCCCCGCTCCGGCGCAGGAAGCAGCTGCGACCACCCCGCGCAC
GGTGGTCGTTCACAACGACCCGAAGGACATTGAACAGCTTGCCCAAACGC
TAGCATCGGCATTCGAGGATGACCCGCTCATCAACTACCTCCACGGCCCG
CATGCCAAACACGTGAACAAAAAGTGCCTCATCTTCGAGCGCACCGTGCT
TCGCGCAGAGCTCTCCCGCCCCAAGGGACAGACCACCATCCATGTTGCAA
ACGACAACAGTTGTGTGGCTGTGTGGCACCACGTGGGGCACTGGAAGATA
TCGGGCTTGTACATGGCCAAATTCATGGTAGCCCTGTTCCGAACATTTGG
GCTGCGGGCGCTGCTCATCGCTTCGGCCATGCGCGAAGTTGAGGACGCTC
ATCCGAAGGAGCCCCATATGCACCTCTTTATCATAGGAACCCATAAAGAC
CATCAAGGAAAAGGGATTGGAAGCACCGTGATATCGGAGATGTTGAAGCA
TTGTGACCTTGAACGTCTGCCAGCGTACTTGGAATCTTCAAACCAACACA
ATTTATCGTTTTACAAAAGGCACGGCTTTGAGCTCATTCAACAAATCCAA
GGAGCTCGAGCGAATTGCCCCCCAATCTTCACCATGTGGCGAGAGCCGCG
TCCCATTCAAAAGCAGTAG
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