Gvermi12764.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12764.t1
Unique NameGvermi12764.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1420436..1421953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1120999.JONM01000002_gene865
PFAMsMFS_1
Max annot lvl28216|Betaproteobacteria
Evalue5e-07
EggNOG OGsCOG2807@1|root,COG2807@2|Bacteria,1QU0F@1224|Proteobacteria,2WH2Q@28216|Betaproteobacteria
DescriptionMajor facilitator Superfamily
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12764Gvermi12764Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1420436..1421953 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12764.t1.stop1Gvermi12764.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1420436..1420438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12764.t1.CDS1Gvermi12764.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1420436..1421953 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12764.t1.exon1Gvermi12764.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1420436..1421953 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12764.t1.start1Gvermi12764.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1421951..1421953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12764.t1Gvermi12764.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1420436..1421953 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12764.t1 ID=Gvermi12764.t1|Name=Gvermi12764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=506bp
MSAFHTRARRAWRFLVPVPACCLLQAIFGLLYASGVFVALIDRSDYTLSV
GVAGLFTSVGITMGGIAMNKLVPRASAQLAPVYVALVGAVGMAAQLLCAV
ALAVHNRPLLFCAAALYGMGCGCIYVASVDVLQAWVPEARGTITGVGMLC
GVTGSLLGIEAFRALAASFDSPLHAIALVAFLSAALTFAAAPMLQRPPPG
WHPTMAVPRADLAAHPAAPDESVPLISSTTPCPSYSTLSVSDILTDPSFY
MLVIALAGTVGPGFGVVLAFQKMAANLFAVDIHHANSLFFWVTFSGIAGR
LLSGVGVDALDDTRERHAGMLGAKRTNKILLAAQFVAVLLVPSAVSAGST
AAFMLAAAVIYITFSGGPVVIACLVGGVFDQNNASLAFSLIAVSIGLGDV
FFSWVVARCSELSSLSGASDPRSHVNDYNLFIVCSALWSVAGFLATHYIS
RCKKLRDNGENEQRRGPSISVDNVPISMDGVLAPFEKTSRQSSCETHLPS
CADLC*
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spliced messenger RNA

>Gvermi12764.t1 ID=Gvermi12764.t1|Name=Gvermi12764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at ScGOVlb_425:1420436..1421953- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCTTCCACACGCGCGCCCGCCGCGCCTGGCGCTTCCTGGTCCC
CGTTCCTGCGTGCTGCTTGTTGCAGGCCATCTTCGGACTGCTGTACGCCT
CGGGCGTGTTTGTCGCCCTCATCGACCGCTCCGACTACACCCTCTCCGTC
GGCGTCGCGGGCCTCTTTACCAGCGTCGGCATCACCATGGGCGGCATTGC
CATGAACAAGCTCGTGCCCAGAGCGAGCGCACAGCTGGCGCCCGTGTACG
TCGCCCTGGTCGGCGCCGTGGGCATGGCGGCGCAGCTTCTGTGCGCCGTC
GCGCTCGCTGTCCACAATCGCCCCTTGCTCTTCTGCGCCGCCGCCCTGTA
CGGCATGGGCTGCGGCTGCATCTACGTCGCCAGCGTCGACGTGTTGCAGG
CCTGGGTCCCCGAGGCGCGCGGCACCATCACGGGCGTCGGCATGCTGTGT
GGCGTCACGGGCTCCCTGCTTGGCATTGAGGCCTTCAGGGCGCTTGCCGC
CTCGTTCGACTCCCCGCTGCACGCCATTGCGCTCGTCGCCTTTCTGTCTG
CCGCCCTGACCTTTGCCGCTGCACCCATGCTGCAGCGACCGCCCCCCGGC
TGGCACCCCACCATGGCTGTGCCCCGTGCCGACCTTGCGGCGCACCCCGC
CGCCCCGGACGAGAGCGTCCCGCTCATCTCGTCCACCACCCCTTGTCCGT
CCTATTCTACCTTGAGTGTCTCCGACATTCTCACCGACCCCTCCTTCTAC
ATGCTCGTCATTGCGCTCGCGGGCACCGTCGGTCCGGGCTTTGGCGTCGT
GCTGGCCTTCCAGAAAATGGCCGCCAACCTGTTTGCTGTCGACATTCATC
ACGCAAACTCCTTGTTTTTCTGGGTTACTTTCTCCGGCATTGCAGGCCGA
CTGCTCTCTGGCGTTGGAGTGGACGCCTTGGATGACACGCGCGAACGGCA
CGCGGGAATGCTCGGAGCGAAGAGAACCAACAAAATTTTGCTTGCCGCCC
AGTTTGTGGCTGTCTTGCTCGTCCCGTCCGCCGTCAGCGCCGGCAGCACG
GCCGCCTTCATGCTGGCCGCCGCCGTCATCTACATCACCTTCAGCGGCGG
CCCTGTGGTGATTGCTTGCCTCGTGGGCGGCGTCTTTGACCAGAACAACG
CCAGTTTGGCCTTTTCTTTGATTGCCGTCAGTATCGGACTGGGCGACGTG
TTCTTCTCGTGGGTTGTTGCCCGCTGCAGTGAACTTTCTTCGCTTTCTGG
CGCCTCAGATCCCCGCTCCCATGTGAACGATTACAATCTGTTCATTGTTT
GTAGCGCGCTGTGGTCCGTAGCCGGATTTCTGGCCACGCATTATATTTCC
AGATGTAAAAAGCTGCGGGACAACGGTGAAAATGAACAAAGAAGAGGGCC
GTCGATATCGGTTGACAACGTTCCCATCTCCATGGACGGTGTTTTGGCGC
CGTTTGAGAAGACATCAAGACAATCTTCGTGCGAAACGCACCTCCCATCC
TGTGCTGATCTATGCTGA
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protein sequence of Gvermi12764.t1

>Gvermi12764.t1 ID=Gvermi12764.t1|Name=Gvermi12764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=506bp
MSAFHTRARRAWRFLVPVPACCLLQAIFGLLYASGVFVALIDRSDYTLSV
GVAGLFTSVGITMGGIAMNKLVPRASAQLAPVYVALVGAVGMAAQLLCAV
ALAVHNRPLLFCAAALYGMGCGCIYVASVDVLQAWVPEARGTITGVGMLC
GVTGSLLGIEAFRALAASFDSPLHAIALVAFLSAALTFAAAPMLQRPPPG
WHPTMAVPRADLAAHPAAPDESVPLISSTTPCPSYSTLSVSDILTDPSFY
MLVIALAGTVGPGFGVVLAFQKMAANLFAVDIHHANSLFFWVTFSGIAGR
LLSGVGVDALDDTRERHAGMLGAKRTNKILLAAQFVAVLLVPSAVSAGST
AAFMLAAAVIYITFSGGPVVIACLVGGVFDQNNASLAFSLIAVSIGLGDV
FFSWVVARCSELSSLSGASDPRSHVNDYNLFIVCSALWSVAGFLATHYIS
RCKKLRDNGENEQRRGPSISVDNVPISMDGVLAPFEKTSRQSSCETHLPS
CADLC*
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mRNA from alignment at ScGOVlb_425:1420436..1421953-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12764.t1 ID=Gvermi12764.t1|Name=Gvermi12764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at ScGOVlb_425:1420436..1421953- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCTTCCACACGCGCGCCCGCCGCGCCTGGCGCTTCCTGGTCCC
CGTTCCTGCGTGCTGCTTGTTGCAGGCCATCTTCGGACTGCTGTACGCCT
CGGGCGTGTTTGTCGCCCTCATCGACCGCTCCGACTACACCCTCTCCGTC
GGCGTCGCGGGCCTCTTTACCAGCGTCGGCATCACCATGGGCGGCATTGC
CATGAACAAGCTCGTGCCCAGAGCGAGCGCACAGCTGGCGCCCGTGTACG
TCGCCCTGGTCGGCGCCGTGGGCATGGCGGCGCAGCTTCTGTGCGCCGTC
GCGCTCGCTGTCCACAATCGCCCCTTGCTCTTCTGCGCCGCCGCCCTGTA
CGGCATGGGCTGCGGCTGCATCTACGTCGCCAGCGTCGACGTGTTGCAGG
CCTGGGTCCCCGAGGCGCGCGGCACCATCACGGGCGTCGGCATGCTGTGT
GGCGTCACGGGCTCCCTGCTTGGCATTGAGGCCTTCAGGGCGCTTGCCGC
CTCGTTCGACTCCCCGCTGCACGCCATTGCGCTCGTCGCCTTTCTGTCTG
CCGCCCTGACCTTTGCCGCTGCACCCATGCTGCAGCGACCGCCCCCCGGC
TGGCACCCCACCATGGCTGTGCCCCGTGCCGACCTTGCGGCGCACCCCGC
CGCCCCGGACGAGAGCGTCCCGCTCATCTCGTCCACCACCCCTTGTCCGT
CCTATTCTACCTTGAGTGTCTCCGACATTCTCACCGACCCCTCCTTCTAC
ATGCTCGTCATTGCGCTCGCGGGCACCGTCGGTCCGGGCTTTGGCGTCGT
GCTGGCCTTCCAGAAAATGGCCGCCAACCTGTTTGCTGTCGACATTCATC
ACGCAAACTCCTTGTTTTTCTGGGTTACTTTCTCCGGCATTGCAGGCCGA
CTGCTCTCTGGCGTTGGAGTGGACGCCTTGGATGACACGCGCGAACGGCA
CGCGGGAATGCTCGGAGCGAAGAGAACCAACAAAATTTTGCTTGCCGCCC
AGTTTGTGGCTGTCTTGCTCGTCCCGTCCGCCGTCAGCGCCGGCAGCACG
GCCGCCTTCATGCTGGCCGCCGCCGTCATCTACATCACCTTCAGCGGCGG
CCCTGTGGTGATTGCTTGCCTCGTGGGCGGCGTCTTTGACCAGAACAACG
CCAGTTTGGCCTTTTCTTTGATTGCCGTCAGTATCGGACTGGGCGACGTG
TTCTTCTCGTGGGTTGTTGCCCGCTGCAGTGAACTTTCTTCGCTTTCTGG
CGCCTCAGATCCCCGCTCCCATGTGAACGATTACAATCTGTTCATTGTTT
GTAGCGCGCTGTGGTCCGTAGCCGGATTTCTGGCCACGCATTATATTTCC
AGATGTAAAAAGCTGCGGGACAACGGTGAAAATGAACAAAGAAGAGGGCC
GTCGATATCGGTTGACAACGTTCCCATCTCCATGGACGGTGTTTTGGCGC
CGTTTGAGAAGACATCAAGACAATCTTCGTGCGAAACGCACCTCCCATCC
TGTGCTGATCTATGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1420436..1421953-

>Gvermi12764.t1 ID=Gvermi12764.t1|Name=Gvermi12764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1518bp|location=Sequence derived from alignment at ScGOVlb_425:1420436..1421953- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCTTCCACACGCGCGCCCGCCGCGCCTGGCGCTTCCTGGTCCC
CGTTCCTGCGTGCTGCTTGTTGCAGGCCATCTTCGGACTGCTGTACGCCT
CGGGCGTGTTTGTCGCCCTCATCGACCGCTCCGACTACACCCTCTCCGTC
GGCGTCGCGGGCCTCTTTACCAGCGTCGGCATCACCATGGGCGGCATTGC
CATGAACAAGCTCGTGCCCAGAGCGAGCGCACAGCTGGCGCCCGTGTACG
TCGCCCTGGTCGGCGCCGTGGGCATGGCGGCGCAGCTTCTGTGCGCCGTC
GCGCTCGCTGTCCACAATCGCCCCTTGCTCTTCTGCGCCGCCGCCCTGTA
CGGCATGGGCTGCGGCTGCATCTACGTCGCCAGCGTCGACGTGTTGCAGG
CCTGGGTCCCCGAGGCGCGCGGCACCATCACGGGCGTCGGCATGCTGTGT
GGCGTCACGGGCTCCCTGCTTGGCATTGAGGCCTTCAGGGCGCTTGCCGC
CTCGTTCGACTCCCCGCTGCACGCCATTGCGCTCGTCGCCTTTCTGTCTG
CCGCCCTGACCTTTGCCGCTGCACCCATGCTGCAGCGACCGCCCCCCGGC
TGGCACCCCACCATGGCTGTGCCCCGTGCCGACCTTGCGGCGCACCCCGC
CGCCCCGGACGAGAGCGTCCCGCTCATCTCGTCCACCACCCCTTGTCCGT
CCTATTCTACCTTGAGTGTCTCCGACATTCTCACCGACCCCTCCTTCTAC
ATGCTCGTCATTGCGCTCGCGGGCACCGTCGGTCCGGGCTTTGGCGTCGT
GCTGGCCTTCCAGAAAATGGCCGCCAACCTGTTTGCTGTCGACATTCATC
ACGCAAACTCCTTGTTTTTCTGGGTTACTTTCTCCGGCATTGCAGGCCGA
CTGCTCTCTGGCGTTGGAGTGGACGCCTTGGATGACACGCGCGAACGGCA
CGCGGGAATGCTCGGAGCGAAGAGAACCAACAAAATTTTGCTTGCCGCCC
AGTTTGTGGCTGTCTTGCTCGTCCCGTCCGCCGTCAGCGCCGGCAGCACG
GCCGCCTTCATGCTGGCCGCCGCCGTCATCTACATCACCTTCAGCGGCGG
CCCTGTGGTGATTGCTTGCCTCGTGGGCGGCGTCTTTGACCAGAACAACG
CCAGTTTGGCCTTTTCTTTGATTGCCGTCAGTATCGGACTGGGCGACGTG
TTCTTCTCGTGGGTTGTTGCCCGCTGCAGTGAACTTTCTTCGCTTTCTGG
CGCCTCAGATCCCCGCTCCCATGTGAACGATTACAATCTGTTCATTGTTT
GTAGCGCGCTGTGGTCCGTAGCCGGATTTCTGGCCACGCATTATATTTCC
AGATGTAAAAAGCTGCGGGACAACGGTGAAAATGAACAAAGAAGAGGGCC
GTCGATATCGGTTGACAACGTTCCCATCTCCATGGACGGTGTTTTGGCGC
CGTTTGAGAAGACATCAAGACAATCTTCGTGCGAAACGCACCTCCCATCC
TGTGCTGATCTATGCTGA
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