Gvermi12839.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi12839.t1
Unique Name	Gvermi12839.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	299

Homology

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BLAST of Gvermi12839.t1 vs. uniprot
Match: A0A2V3J1M7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1M7_9FLOR)

HSP 1 Score: 151 bits (381), Expect = 1.690e-40
Identity = 107/282 (37.94%), Postives = 149/282 (52.84%), Query Frame = 0

Query:   12 FAVITTSVVYISVSDL--RHVWSTGRSGKGTQTSSERTKCIVYDKPPRTGSTTIGRALHSCLKKAGYVQHPPPEGNRAKQKATAIQQMLNFDN-QSKRKASLSRHVYITETDLKLIRLRCDDFLYITSTAPIRERLWSAVKHLLARRYGSSINYSLDMKEARQLLRNQSFEKGQLRSLYELNAYPYLTQDAVKVNIKRKLIPDYVIRKASLEHDLKALLHSFRCDDSFKVRNVHK---DNIQYLSKLFSDVPLQDEDQLYKSLCETAKQNNIDTLKLAATFV 287
            F  + T +  IS + L   H ++   +   +QT S R  C +YD+PPRT STTIG AL SCL++  + Q PP E  R+     AI   + FDN Q+ RKA LSRH Y+    + L+R RC    YITS API ERL SA K+ L+  +G+S   +LD ++        +    Q R L   N YPY+  D   +N+   L+P+YVIRK  L  DL  LL + +CD SF   NVH+   D  Q L  + +      +D LY++L   A  +N   L+    F+
Sbjct:   12 FITLITLLTVISYNSLPVNHGFAPRGNPPSSQTPSIR--CFIYDRPPRTASTTIGTALQSCLRRHHFRQ-PPREKQRS-----AIPYTI-FDNLQTPRKALLSRHFYLNSRTVSLLRKRCSTLFYITSCAPIEERLLSASKYTLSGGHGNS---TLDDQQMHAAAEKANSSTRQKRFL---NHYPYVDDDKKPINVSTPLVPNYVIRKPHLRQDLTKLLQTLQCDTSFVSGNVHRAPADESQILQHITAG-----DDTLYQTLARRALSHNALGLQQLKQFI 273

[Close]

BLAST of Gvermi12839.t1 vs. uniprot
Match: A0A2V3J4P6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4P6_9FLOR)

HSP 1 Score: 149 bits (375), Expect = 1.690e-39
Identity = 93/250 (37.20%), Postives = 135/250 (54.00%), Query Frame = 0

Query:   39 GTQTSSERTKCIVYDKPPRTGSTTIGRALHSCLKKAGYVQHPPPEGNRAKQKATAIQQMLNFDNQSKRKASLSRHVYITETDLKLIRLRCDDFLYITSTAPIRERLWSAVKHLLARRYGSSINYSLDMKEARQLLRNQSFEKGQLRSLYELNAYPYLTQDAVKVNIKR--KLIPDYVIRKASLEHDLKALLHSFRCDDSFKVRNVHKDNIQYLSKLFSDVPLQDEDQLYKSLCETAKQNNIDTLKLAATF 286
            G+  SS  T C++YD+PPRT STTIG AL  CL+  GY Q   P+      ++  +  ML    +  R + L+RH Y+  T L  +R  CD   YITSTAP++ERLWS VK+    ++G+S      +  A Q LR ++ +      +  LNAYPYL      +N      + PDYVIRK+ L  D+  LL +F C+  F   N+H   +++ S L   + + D+D L++ +   A+Q N   LK AA F
Sbjct:   49 GSSLSSPHT-CVIYDRPPRTASTTIGNALEKCLEPLGYEQ---PDWQGMDGRSLMVLNMLRLPFE--RVSLLARHFYMNSTSLLELRTGCDALFYITSTAPMKERLWSLVKYRQVTKHGNSSLNETQLFAALQDLRKETVQ------IEVLNAYPYLQTHETPINRSTIDTITPDYVIRKSQLNEDMSKLLRAFGCETRFVSENIHL--LEHASGL-DKITIDDDDGLHERMLRLARQRNDVGLKKAADF 283

The following BLAST results are available for this feature:

BLAST of Gvermi12839.t1 vs. uniprot

BLAST of Gvermi12839.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J1M7_9FLOR	1.690e-40	37.94	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A2V3J4P6_9FLOR	1.690e-39	37.20	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..298
None	No IPR available	TMHMM	TMhelix		coord: 7..24

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1764828..1765724 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12839.t1	Gvermi12839.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_425 1764828..1765724 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi12839.t1 ID=Gvermi12839.t1|Name=Gvermi12839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=299bp
MNTRASLFLMLFAVITTSVVYISVSDLRHVWSTGRSGKGTQTSSERTKCI
VYDKPPRTGSTTIGRALHSCLKKAGYVQHPPPEGNRAKQKATAIQQMLNF
DNQSKRKASLSRHVYITETDLKLIRLRCDDFLYITSTAPIRERLWSAVKH
LLARRYGSSINYSLDMKEARQLLRNQSFEKGQLRSLYELNAYPYLTQDAV
KVNIKRKLIPDYVIRKASLEHDLKALLHSFRCDDSFKVRNVHKDNIQYLS
KLFSDVPLQDEDQLYKSLCETAKQNNIDTLKLAATFVPRYAYAKRIDF*