Gvermi12708.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12708.t1
Unique NameGvermi12708.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1082539..1083435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD36858
PFAMsMito_carr
Max annot lvl2759|Eukaryota
Evalue1.42e-61
EggNOG OGs28MPG@1|root,2QU7F@2759|Eukaryota
DescriptionMitochondrial carrier protein
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12708Gvermi12708Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1082539..1083435 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12708.t1.stop1Gvermi12708.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1082539..1082541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12708.t1.CDS1Gvermi12708.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1082539..1083435 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12708.t1.exon1Gvermi12708.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1082539..1083435 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12708.t1.start1Gvermi12708.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1083433..1083435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12708.t1Gvermi12708.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1082539..1083435 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12708.t1 ID=Gvermi12708.t1|Name=Gvermi12708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=299bp
MYSSAGCADASAPMRRPVPVPMPSLSALKAGMPGAAAAACQTASFMWLST
TAAFQYRSGASLRQALRLLYAQGGVKRFYSGLAPTLLHVTLCRFGDTTAN
NLALTLAPTDSVALNTLCASFAAAAWRATLLPLETVRSNMQVRGPHGFSI
VVDRFRSAGFGGLYRGSAASFSAGLVGHFPFFFTVNVVSHAVPLSDDAPL
LAKVGRNGGMGFLAAMSADIFTNGFKVVATNKQTCDKGLSYYEVARKIVK
RDGISSIVTRGLKTRMIANGLQGATFVLLWKEIESRLVRTRFNPSADN*
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spliced messenger RNA

>Gvermi12708.t1 ID=Gvermi12708.t1|Name=Gvermi12708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_425:1082539..1083435- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTCCTCCGCCGGCTGCGCCGACGCCTCCGCCCCCATGCGCCGCCC
CGTGCCCGTGCCCATGCCCTCGCTGTCCGCGCTCAAGGCCGGCATGCCCG
GCGCCGCCGCCGCCGCCTGCCAAACCGCCTCCTTCATGTGGCTGTCCACC
ACGGCCGCCTTCCAGTACCGATCCGGCGCCTCGCTCCGCCAGGCGCTGCG
CCTGCTGTACGCGCAGGGCGGCGTCAAGCGCTTCTACTCCGGCCTGGCGC
CCACGCTCTTGCACGTCACGCTGTGCCGCTTCGGCGACACCACCGCCAAC
AACCTGGCGCTCACGCTGGCGCCCACCGACAGCGTCGCGCTCAACACGCT
GTGCGCCAGCTTCGCCGCCGCCGCGTGGCGCGCCACGCTGCTGCCGCTCG
AGACCGTGCGCTCCAACATGCAGGTGCGCGGCCCGCACGGCTTCTCCATC
GTCGTCGATCGCTTTCGCAGCGCGGGCTTCGGCGGCTTGTATCGCGGCAG
CGCCGCCAGTTTCTCCGCCGGCCTCGTGGGCCATTTCCCGTTTTTCTTCA
CCGTCAACGTCGTGTCGCACGCCGTTCCGCTGTCTGACGACGCTCCGCTG
CTGGCCAAGGTCGGTCGAAACGGCGGCATGGGCTTCTTGGCCGCCATGTC
CGCTGACATCTTCACCAATGGTTTCAAGGTTGTGGCCACCAACAAGCAGA
CGTGTGACAAGGGCTTGTCCTACTACGAAGTGGCGCGCAAGATCGTCAAG
CGAGACGGCATCTCTTCCATTGTCACTCGTGGACTCAAGACAAGGATGAT
CGCCAACGGACTGCAAGGAGCCACATTTGTTCTGCTCTGGAAGGAGATTG
AATCGCGCCTCGTGCGAACACGATTCAATCCGTCTGCTGACAACTAA
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protein sequence of Gvermi12708.t1

>Gvermi12708.t1 ID=Gvermi12708.t1|Name=Gvermi12708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=299bp
MYSSAGCADASAPMRRPVPVPMPSLSALKAGMPGAAAAACQTASFMWLST
TAAFQYRSGASLRQALRLLYAQGGVKRFYSGLAPTLLHVTLCRFGDTTAN
NLALTLAPTDSVALNTLCASFAAAAWRATLLPLETVRSNMQVRGPHGFSI
VVDRFRSAGFGGLYRGSAASFSAGLVGHFPFFFTVNVVSHAVPLSDDAPL
LAKVGRNGGMGFLAAMSADIFTNGFKVVATNKQTCDKGLSYYEVARKIVK
RDGISSIVTRGLKTRMIANGLQGATFVLLWKEIESRLVRTRFNPSADN*
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mRNA from alignment at ScGOVlb_425:1082539..1083435-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12708.t1 ID=Gvermi12708.t1|Name=Gvermi12708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_425:1082539..1083435- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTCCTCCGCCGGCTGCGCCGACGCCTCCGCCCCCATGCGCCGCCC
CGTGCCCGTGCCCATGCCCTCGCTGTCCGCGCTCAAGGCCGGCATGCCCG
GCGCCGCCGCCGCCGCCTGCCAAACCGCCTCCTTCATGTGGCTGTCCACC
ACGGCCGCCTTCCAGTACCGATCCGGCGCCTCGCTCCGCCAGGCGCTGCG
CCTGCTGTACGCGCAGGGCGGCGTCAAGCGCTTCTACTCCGGCCTGGCGC
CCACGCTCTTGCACGTCACGCTGTGCCGCTTCGGCGACACCACCGCCAAC
AACCTGGCGCTCACGCTGGCGCCCACCGACAGCGTCGCGCTCAACACGCT
GTGCGCCAGCTTCGCCGCCGCCGCGTGGCGCGCCACGCTGCTGCCGCTCG
AGACCGTGCGCTCCAACATGCAGGTGCGCGGCCCGCACGGCTTCTCCATC
GTCGTCGATCGCTTTCGCAGCGCGGGCTTCGGCGGCTTGTATCGCGGCAG
CGCCGCCAGTTTCTCCGCCGGCCTCGTGGGCCATTTCCCGTTTTTCTTCA
CCGTCAACGTCGTGTCGCACGCCGTTCCGCTGTCTGACGACGCTCCGCTG
CTGGCCAAGGTCGGTCGAAACGGCGGCATGGGCTTCTTGGCCGCCATGTC
CGCTGACATCTTCACCAATGGTTTCAAGGTTGTGGCCACCAACAAGCAGA
CGTGTGACAAGGGCTTGTCCTACTACGAAGTGGCGCGCAAGATCGTCAAG
CGAGACGGCATCTCTTCCATTGTCACTCGTGGACTCAAGACAAGGATGAT
CGCCAACGGACTGCAAGGAGCCACATTTGTTCTGCTCTGGAAGGAGATTG
AATCGCGCCTCGTGCGAACACGATTCAATCCGTCTGCTGACAACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1082539..1083435-

>Gvermi12708.t1 ID=Gvermi12708.t1|Name=Gvermi12708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=897bp|location=Sequence derived from alignment at ScGOVlb_425:1082539..1083435- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTCCTCCGCCGGCTGCGCCGACGCCTCCGCCCCCATGCGCCGCCC
CGTGCCCGTGCCCATGCCCTCGCTGTCCGCGCTCAAGGCCGGCATGCCCG
GCGCCGCCGCCGCCGCCTGCCAAACCGCCTCCTTCATGTGGCTGTCCACC
ACGGCCGCCTTCCAGTACCGATCCGGCGCCTCGCTCCGCCAGGCGCTGCG
CCTGCTGTACGCGCAGGGCGGCGTCAAGCGCTTCTACTCCGGCCTGGCGC
CCACGCTCTTGCACGTCACGCTGTGCCGCTTCGGCGACACCACCGCCAAC
AACCTGGCGCTCACGCTGGCGCCCACCGACAGCGTCGCGCTCAACACGCT
GTGCGCCAGCTTCGCCGCCGCCGCGTGGCGCGCCACGCTGCTGCCGCTCG
AGACCGTGCGCTCCAACATGCAGGTGCGCGGCCCGCACGGCTTCTCCATC
GTCGTCGATCGCTTTCGCAGCGCGGGCTTCGGCGGCTTGTATCGCGGCAG
CGCCGCCAGTTTCTCCGCCGGCCTCGTGGGCCATTTCCCGTTTTTCTTCA
CCGTCAACGTCGTGTCGCACGCCGTTCCGCTGTCTGACGACGCTCCGCTG
CTGGCCAAGGTCGGTCGAAACGGCGGCATGGGCTTCTTGGCCGCCATGTC
CGCTGACATCTTCACCAATGGTTTCAAGGTTGTGGCCACCAACAAGCAGA
CGTGTGACAAGGGCTTGTCCTACTACGAAGTGGCGCGCAAGATCGTCAAG
CGAGACGGCATCTCTTCCATTGTCACTCGTGGACTCAAGACAAGGATGAT
CGCCAACGGACTGCAAGGAGCCACATTTGTTCTGCTCTGGAAGGAGATTG
AATCGCGCCTCGTGCGAACACGATTCAATCCGTCTGCTGACAACTAA
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