Gvermi12827.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12827.t1
Unique NameGvermi12827.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1712079..1713176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX46056
PFAMsMethyltransf_21
Max annot lvl2759|Eukaryota
Evalue7.9e-18
EggNOG OGs2E06X@1|root,2S7NC@2759|Eukaryota
DescriptionMethyltransferase FkbM domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12827Gvermi12827Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1712079..1713176 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12827.t1.start1Gvermi12827.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1712079..1712081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12827.t1.CDS1Gvermi12827.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1712079..1713176 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12827.t1.exon1Gvermi12827.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1712079..1713176 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12827.t1.stop1Gvermi12827.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1713174..1713176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12827.t1Gvermi12827.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1712079..1713176 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12827.t1 ID=Gvermi12827.t1|Name=Gvermi12827.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=366bp
MVPKKVLRSRLTRTTIFIASGLCLVLILSNSPIVLPATATTTRVTSDAPE
ALANDLKAEWLPAEGVSFVLQRDMNATFFFVEDDPKQGIDPVRSFLLRAE
TNVRGLFHHLLYRPGCEAREAAEKWGNSCAAQDGRREQVVIDVGCNRGWY
SLMAAAYGHRVFAFDPQPHCRALLSASVLVNGFHDLVTFTHAFVTDEHGE
TMDVRRRTGCMGGFPNNNHAGYADKFRKPLERLQGANDMVTVGGVALDDV
FDADRHDVLMLKMDVEGFESHALASGRKLLERGAVRNIVVEFNLPMMSRQ
REGIEVMKERCINLVRQLMTDYGYKAKGSHKGSWNKQREMTIDEWERLFA
TERDMFVTIDAWFYK*
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spliced messenger RNA

>Gvermi12827.t1 ID=Gvermi12827.t1|Name=Gvermi12827.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at ScGOVlb_425:1712079..1713176+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCTAAGAAGGTTCTACGCTCGAGATTGACGCGCACTACAATTTT
CATCGCTTCTGGGCTCTGTTTAGTTCTCATACTCAGTAACTCTCCAATCG
TCCTTCCGGCGACTGCTACCACGACTCGAGTTACTTCTGATGCGCCAGAA
GCGCTTGCAAATGATCTCAAAGCCGAATGGCTTCCGGCTGAAGGTGTGTC
GTTCGTACTACAGCGGGATATGAATGCCACTTTCTTCTTTGTGGAAGATG
ATCCGAAACAGGGTATCGATCCCGTTCGCTCATTTCTTTTACGCGCGGAA
ACAAATGTTCGAGGTCTGTTTCATCACTTGCTCTATCGACCAGGATGCGA
GGCGCGCGAAGCGGCAGAAAAATGGGGAAATTCATGCGCCGCACAGGATG
GAAGGCGAGAGCAAGTGGTCATCGATGTTGGGTGTAACCGTGGATGGTAC
AGTCTGATGGCGGCGGCCTACGGTCATCGCGTTTTCGCGTTTGATCCGCA
GCCTCACTGTCGGGCTCTGCTTTCCGCATCTGTGCTCGTCAACGGTTTTC
ACGATCTGGTAACGTTCACCCATGCGTTTGTAACTGATGAGCATGGCGAA
ACGATGGATGTGCGGCGTCGTACGGGCTGCATGGGAGGGTTTCCGAACAA
CAATCACGCTGGGTATGCTGATAAGTTCAGAAAGCCTCTAGAACGACTGC
AAGGTGCAAACGACATGGTGACTGTTGGGGGCGTAGCTCTCGACGACGTG
TTTGATGCGGATAGACATGATGTGTTAATGTTGAAGATGGATGTTGAAGG
ATTTGAAAGCCATGCGTTGGCCAGCGGCAGAAAACTATTGGAACGTGGCG
CTGTGCGCAACATTGTGGTTGAATTCAATCTGCCGATGATGTCAAGACAG
CGAGAGGGCATTGAAGTGATGAAAGAACGGTGTATAAACCTTGTGCGGCA
ATTGATGACAGACTACGGGTACAAGGCAAAGGGGTCTCACAAGGGAAGTT
GGAACAAGCAACGAGAAATGACGATAGACGAATGGGAAAGGCTGTTTGCA
ACGGAAAGAGACATGTTTGTGACGATTGACGCGTGGTTTTATAAATGA
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protein sequence of Gvermi12827.t1

>Gvermi12827.t1 ID=Gvermi12827.t1|Name=Gvermi12827.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=366bp
MVPKKVLRSRLTRTTIFIASGLCLVLILSNSPIVLPATATTTRVTSDAPE
ALANDLKAEWLPAEGVSFVLQRDMNATFFFVEDDPKQGIDPVRSFLLRAE
TNVRGLFHHLLYRPGCEAREAAEKWGNSCAAQDGRREQVVIDVGCNRGWY
SLMAAAYGHRVFAFDPQPHCRALLSASVLVNGFHDLVTFTHAFVTDEHGE
TMDVRRRTGCMGGFPNNNHAGYADKFRKPLERLQGANDMVTVGGVALDDV
FDADRHDVLMLKMDVEGFESHALASGRKLLERGAVRNIVVEFNLPMMSRQ
REGIEVMKERCINLVRQLMTDYGYKAKGSHKGSWNKQREMTIDEWERLFA
TERDMFVTIDAWFYK*
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mRNA from alignment at ScGOVlb_425:1712079..1713176+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12827.t1 ID=Gvermi12827.t1|Name=Gvermi12827.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at ScGOVlb_425:1712079..1713176+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTCCTAAGAAGGTTCTACGCTCGAGATTGACGCGCACTACAATTTT
CATCGCTTCTGGGCTCTGTTTAGTTCTCATACTCAGTAACTCTCCAATCG
TCCTTCCGGCGACTGCTACCACGACTCGAGTTACTTCTGATGCGCCAGAA
GCGCTTGCAAATGATCTCAAAGCCGAATGGCTTCCGGCTGAAGGTGTGTC
GTTCGTACTACAGCGGGATATGAATGCCACTTTCTTCTTTGTGGAAGATG
ATCCGAAACAGGGTATCGATCCCGTTCGCTCATTTCTTTTACGCGCGGAA
ACAAATGTTCGAGGTCTGTTTCATCACTTGCTCTATCGACCAGGATGCGA
GGCGCGCGAAGCGGCAGAAAAATGGGGAAATTCATGCGCCGCACAGGATG
GAAGGCGAGAGCAAGTGGTCATCGATGTTGGGTGTAACCGTGGATGGTAC
AGTCTGATGGCGGCGGCCTACGGTCATCGCGTTTTCGCGTTTGATCCGCA
GCCTCACTGTCGGGCTCTGCTTTCCGCATCTGTGCTCGTCAACGGTTTTC
ACGATCTGGTAACGTTCACCCATGCGTTTGTAACTGATGAGCATGGCGAA
ACGATGGATGTGCGGCGTCGTACGGGCTGCATGGGAGGGTTTCCGAACAA
CAATCACGCTGGGTATGCTGATAAGTTCAGAAAGCCTCTAGAACGACTGC
AAGGTGCAAACGACATGGTGACTGTTGGGGGCGTAGCTCTCGACGACGTG
TTTGATGCGGATAGACATGATGTGTTAATGTTGAAGATGGATGTTGAAGG
ATTTGAAAGCCATGCGTTGGCCAGCGGCAGAAAACTATTGGAACGTGGCG
CTGTGCGCAACATTGTGGTTGAATTCAATCTGCCGATGATGTCAAGACAG
CGAGAGGGCATTGAAGTGATGAAAGAACGGTGTATAAACCTTGTGCGGCA
ATTGATGACAGACTACGGGTACAAGGCAAAGGGGTCTCACAAGGGAAGTT
GGAACAAGCAACGAGAAATGACGATAGACGAATGGGAAAGGCTGTTTGCA
ACGGAAAGAGACATGTTTGTGACGATTGACGCGTGGTTTTATAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1712079..1713176+

>Gvermi12827.t1 ID=Gvermi12827.t1|Name=Gvermi12827.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1098bp|location=Sequence derived from alignment at ScGOVlb_425:1712079..1713176+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTCCTAAGAAGGTTCTACGCTCGAGATTGACGCGCACTACAATTTT
CATCGCTTCTGGGCTCTGTTTAGTTCTCATACTCAGTAACTCTCCAATCG
TCCTTCCGGCGACTGCTACCACGACTCGAGTTACTTCTGATGCGCCAGAA
GCGCTTGCAAATGATCTCAAAGCCGAATGGCTTCCGGCTGAAGGTGTGTC
GTTCGTACTACAGCGGGATATGAATGCCACTTTCTTCTTTGTGGAAGATG
ATCCGAAACAGGGTATCGATCCCGTTCGCTCATTTCTTTTACGCGCGGAA
ACAAATGTTCGAGGTCTGTTTCATCACTTGCTCTATCGACCAGGATGCGA
GGCGCGCGAAGCGGCAGAAAAATGGGGAAATTCATGCGCCGCACAGGATG
GAAGGCGAGAGCAAGTGGTCATCGATGTTGGGTGTAACCGTGGATGGTAC
AGTCTGATGGCGGCGGCCTACGGTCATCGCGTTTTCGCGTTTGATCCGCA
GCCTCACTGTCGGGCTCTGCTTTCCGCATCTGTGCTCGTCAACGGTTTTC
ACGATCTGGTAACGTTCACCCATGCGTTTGTAACTGATGAGCATGGCGAA
ACGATGGATGTGCGGCGTCGTACGGGCTGCATGGGAGGGTTTCCGAACAA
CAATCACGCTGGGTATGCTGATAAGTTCAGAAAGCCTCTAGAACGACTGC
AAGGTGCAAACGACATGGTGACTGTTGGGGGCGTAGCTCTCGACGACGTG
TTTGATGCGGATAGACATGATGTGTTAATGTTGAAGATGGATGTTGAAGG
ATTTGAAAGCCATGCGTTGGCCAGCGGCAGAAAACTATTGGAACGTGGCG
CTGTGCGCAACATTGTGGTTGAATTCAATCTGCCGATGATGTCAAGACAG
CGAGAGGGCATTGAAGTGATGAAAGAACGGTGTATAAACCTTGTGCGGCA
ATTGATGACAGACTACGGGTACAAGGCAAAGGGGTCTCACAAGGGAAGTT
GGAACAAGCAACGAGAAATGACGATAGACGAATGGGAAAGGCTGTTTGCA
ACGGAAAGAGACATGTTTGTGACGATTGACGCGTGGTTTTATAAATGA
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