Gvermi12798.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12798.t1
Unique NameGvermi12798.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length245
Homology
BLAST of Gvermi12798.t1 vs. uniprot
Match: A0A2V3ILC2_9FLOR (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILC2_9FLOR)

HSP 1 Score: 342 bits (877), Expect = 9.120e-117
Identity = 165/214 (77.10%), Postives = 189/214 (88.32%), Query Frame = 0
Query:    1 MVASSSNMNAEQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQEDNSNADKGAQVLSGAEKSAIDAMLFDVLEKNRQIHAAHAEKMSA-QGEK 213
            MVASSSNM  E+TEDLTGVMWHDKNWL++FPL+KD+VLEYFSHSQFYDERCNNQQIKLQ LD KLLE+M GIEYQVTAD APGLF+ITKFLRS+ P +LEPLAMYYVL+GDVYQAPS+HAILSSRILQ LHHLRKAFETMQ+A+ VSVQG+Y WEP PV +NE+ED    + G ++LSGAE+S +D MLF+VLE+NRQIH AH EKM A QG+K
Sbjct:    1 MVASSSNMAVEETEDLTGVMWHDKNWLSFFPLSKDNVLEYFSHSQFYDERCNNQQIKLQMLDNKLLESMAGIEYQVTADVAPGLFVITKFLRSLSPASLEPLAMYYVLDGDVYQAPSVHAILSSRILQCLHHLRKAFETMQNASTVSVQGQYWWEPSPVGVNEREDVGEGEGGTELLSGAERSGVDGMLFEVLERNRQIHGAHVEKMCASQGDK 214          
BLAST of Gvermi12798.t1 vs. uniprot
Match: A0A7S3EG92_9RHOD (Mediator of RNA polymerase II transcription subunit 6 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EG92_9RHOD)

HSP 1 Score: 144 bits (363), Expect = 1.040e-38
Identity = 79/214 (36.92%), Postives = 120/214 (56.07%), Query Frame = 0
Query:   14 EDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPA--PGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQ-------------------------SATAVSVQGK-YSWEPPPVCLNEQEDNSNADKGAQVLSGAEKSAIDAMLFDVLEKNRQI 199
            E LT + W+DK WL+YFPL KD VLEYF+ S FY+  C N+Q K+QRL++   E +PGI Y+V  D    P LF+I K  R+     +  LA YY++ G  Y++P  H++L++RI+QS++HLR AF+ +Q                         S    S QG  YSW+P     ++  D+ +  + A V    E+  +D +L+ +LE+NR++
Sbjct:    4 ESLTSLSWNDKVWLSYFPLDKDTVLEYFARSPFYNRSCLNEQYKMQRLEISAFENVPGILYEVVHDLTNEPLLFVIAKLERAENL-TVRTLAYYYIMNGVAYESPKAHSVLTTRIVQSMYHLRNAFDALQEKVGSHTCLLLRIVIPRRKPPDIQCSVQIPSEQGDWYSWKPSYGSSSDAGDDKDESEAAIV----ERQTVDRLLYGILERNRRV 212          
BLAST of Gvermi12798.t1 vs. uniprot
Match: F4Q2D8_CAVFA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q2D8_CAVFA)

HSP 1 Score: 140 bits (352), Expect = 3.760e-37
Identity = 67/142 (47.18%), Postives = 94/142 (66.20%), Query Frame = 0
Query:   12 QTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYS 153
            + EDLT +MW D  WL  FPL +  VL YFS SQFYD++CNN+ +K+QRLD   L+TM GIEYQV     P LF+I +  R   P +++   +YY++ G +YQAP + A+L+SR+ QSL+HLR+AF+ + S     +   YS
Sbjct:   19 EVEDLTQIMWRDPLWLQMFPLNQMTVLTYFSMSQFYDKQCNNEILKMQRLDPSALKTMVGIEYQVINYQEPSLFLIARQYRE-SPGDVKVQTLYYIINGSIYQAPDLKAVLTSRLTQSLYHLRQAFDKIGSIVNWDIVNGYS 159          
BLAST of Gvermi12798.t1 vs. uniprot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MED6_DICDI)

HSP 1 Score: 140 bits (353), Expect = 4.030e-37
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 0
Query:   11 EQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQEDNSNA 170
            E+  DLT VMW D  WL  +PL    +L+YFS+SQFYD+ CNN+Q+K+QRLDL  L+ M G+EY++     P  F+I K  R I P ++    +YYV+ G++YQAP +H +  SR+ QS+ HL +AF ++ S     +   YS    P   N+QE +  A
Sbjct:   61 EEEPDLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQRLDLSALKNMDGLEYELIKFVEPSFFLIAKQTR-ISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNWDIVNGYSLNLDP--SNQQEKSKLA 217          
BLAST of Gvermi12798.t1 vs. uniprot
Match: D3AXU0_POLPP (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AXU0_POLPP)

HSP 1 Score: 135 bits (340), Expect = 1.400e-35
Identity = 72/183 (39.34%), Postives = 104/183 (56.83%), Query Frame = 0
Query:   11 EQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQEDNSNADKGAQVLSGAEKSAIDAMLFDVL 193
            ++ +DLT +MW D+ WL+ FPL K  +L YFS SQFYD++CNN+ +K+QRLD   L+TM G+EY+V  D  P LFII K  R      +    +YYV+ G +YQ+P I  +L SR++QSL HL  AFE + S     +   Y        +N      N  + +++++   K   D   FD L
Sbjct:   17 DEEQDLTQIMWRDQVWLSQFPLNKMTILNYFSLSQFYDKQCNNEILKMQRLDPSALKTMVGLEYEVVVDKEPLLFIIAKQNRLTANDAITQ-TLYYVINGSIYQSPDIKNVLESRMIQSLFHLINAFEKILSTVNWDIVKGYQ-------INLDGSQMNQQEKSKLVAFTRKQIEDTKRFDSL 191          
BLAST of Gvermi12798.t1 vs. uniprot
Match: A0A8J4Q4B9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q4B9_9MYCE)

HSP 1 Score: 133 bits (334), Expect = 1.930e-34
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 0
Query:   11 EQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQEDNS 168
            ++  DLT VMW D  WL  FPL    VL YF +SQFYD+ CNN+ +K+QRL+L  L+TM GIEY++     PG ++I K  R + P +     +YYV+ G++YQ+P + ++ +SRI QSL+HL +AF  + S     +   YS    P   N+Q++ S
Sbjct:   26 KEEPDLTQVMWRDPLWLQMFPLNAQTVLSYFYYSQFYDKSCNNEILKMQRLELSSLKTMIGIEYELAHFVEPGFYVIAKQNR-VSPTDAVIQTLYYVINGNIYQSPYLRSVFTSRISQSLYHLSEAFSNISSTINWDITSGYSMNLDP---NKQQEKS 179          
BLAST of Gvermi12798.t1 vs. uniprot
Match: F0ZNV8_DICPU (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNV8_DICPU)

HSP 1 Score: 132 bits (333), Expect = 4.350e-34
Identity = 68/155 (43.87%), Postives = 94/155 (60.65%), Query Frame = 0
Query:   11 EQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQE 165
            E+  D T VMW D  WL  FPL +  VL YFS+SQFYD+ CNN+ +K+QRLD   L+TM G+EY+V     P  ++I K  R I P ++    +YYV+ G++YQAP +  + +SRI QSL HL +AF  + S     +   YS+   P   N+QE
Sbjct:   68 EEEPDFTQVMWRDPVWLQMFPLNQHTVLTYFSYSQFYDKNCNNETLKMQRLDPAALKTMEGLEYEVAKFVEPSFYLIAKQNR-ISPSDVIIQQLYYVINGNIYQAPDLRQVFTSRISQSLFHLSEAFNKISSIINWDIINGYSFNFDP--SNQQE 219          
BLAST of Gvermi12798.t1 vs. uniprot
Match: UPI000644C0CC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C0CC)

HSP 1 Score: 130 bits (327), Expect = 1.010e-33
Identity = 63/139 (45.32%), Postives = 86/139 (61.87%), Query Frame = 0
Query:   14 EDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKY 152
            EDLT +MW D  WL   PL K  VL YFS SQFYD++CNN+ +K+QRLD   L+TM GIEY+V     P LF++ K  R + P +     +YY++ G +YQ+P I ++  SR++QSL HL  AFE + S     +   Y
Sbjct:   26 EDLTQIMWRDPVWLQQIPLNKQTVLLYFSMSQFYDKQCNNEILKMQRLDPSALKTMIGIEYEVVMAQEPMLFLVAKQSR-VSPTDASVQTLYYIINGTIYQSPDIRSVFESRMVQSLFHLIHAFEKLLSTVTWDIVDGY 163          
BLAST of Gvermi12798.t1 vs. uniprot
Match: M2XHR9_GALSU (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHR9_GALSU)

HSP 1 Score: 125 bits (315), Expect = 2.400e-32
Identity = 70/187 (37.43%), Postives = 108/187 (57.75%), Query Frame = 0
Query:   10 AEQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLN-----EQEDNSNADKGAQVLSGAEKSAIDAMLFD 191
            A   EDL  + W D  +LA FPLT++ VL+YFS S FYD  CNN+QI++Q+LD ++L  + G EY VT    P  F++ K  R  R    + L ++Y+++G VYQAPS+ ++L SR+ +S  H+ ++FE++Q A+       +S     + LN     EQ+   N +K  + L   E  A++  L D
Sbjct:    6 ASLVEDLAHLSWRDNWFLANFPLTQETVLDYFSGSPFYDPSCNNEQIRMQKLDPEVLYNLVGTEYMVTNQQEPVFFVVEKVYRYNRE-ETKTLQVFYIIQGTVYQAPSLRSLLLSRLSESFFHISESFESLQQASL------FSKVSSNLLLNFDREEEQDKVENLEKWTKTLP-QEPKAVETSLID 184          
BLAST of Gvermi12798.t1 vs. uniprot
Match: A0A1Y1HUV0_KLENI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUV0_KLENI)

HSP 1 Score: 122 bits (306), Expect = 1.050e-30
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 0
Query:   15 DLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMP-GIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAF 137
            DLTGV++ D  WL  FPL +  VL+YF+ S FYD  CNN+++K Q  DL LL TMP G EY V +   P L++I K LR + P  + PLA YYVL+G +YQAP + A+L SR  +SL++++  F
Sbjct:    7 DLTGVLFSDPLWLQSFPLNRATVLDYFALSPFYDASCNNEKLKAQGKDLSLLSTMPYGPEYVVISAQEPNLYVIRKQLR-VSPDKMVPLAAYYVLDGSIYQAPHLQAVLGSRAERSLYYVQSGF 129          
The following BLAST results are available for this feature:
BLAST of Gvermi12798.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILC2_9FLOR9.120e-11777.10Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3EG92_9RHOD1.040e-3836.92Mediator of RNA polymerase II transcription subuni... [more]
F4Q2D8_CAVFA3.760e-3747.18Mediator of RNA polymerase II transcription subuni... [more]
MED6_DICDI4.030e-3742.50Putative mediator of RNA polymerase II transcripti... [more]
D3AXU0_POLPP1.400e-3539.34Mediator of RNA polymerase II transcription subuni... [more]
A0A8J4Q4B9_9MYCE1.930e-3441.77Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F0ZNV8_DICPU4.350e-3443.87Mediator of RNA polymerase II transcription subuni... [more]
UPI000644C0CC1.010e-3345.32hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
M2XHR9_GALSU2.400e-3237.43Mediator of RNA polymerase II transcription subuni... [more]
A0A1Y1HUV0_KLENI1.050e-3049.19Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038566Mediator complex, subunit Med6 superfamilyGENE3D3.10.450.580Mediator complex, subunit Med6coord: 11..141
e-value: 2.2E-40
score: 139.8
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 19..144
e-value: 4.0E-38
score: 130.2
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 8..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..219
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 8..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1544456..1545190 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12798.t1Gvermi12798.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1544456..1545190 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12798.t1 ID=Gvermi12798.t1|Name=Gvermi12798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=245bp
MVASSSNMNAEQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDER
CNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLE
PLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQG
KYSWEPPPVCLNEQEDNSNADKGAQVLSGAEKSAIDAMLFDVLEKNRQIH
AAHAEKMSAQGEKREDDVAGNAPSASPSATATATGLSHPARSAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038566Mediator_Med6_sf
IPR007018Mediator_Med6