Gvermi12798.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male
|
Overview
Homology
BLAST of Gvermi12798.t1 vs. uniprot
Match: A0A2V3ILC2_9FLOR (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILC2_9FLOR) HSP 1 Score: 342 bits (877), Expect = 9.120e-117 Identity = 165/214 (77.10%), Postives = 189/214 (88.32%), Query Frame = 0
Query: 1 MVASSSNMNAEQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQEDNSNADKGAQVLSGAEKSAIDAMLFDVLEKNRQIHAAHAEKMSA-QGEK 213
MVASSSNM E+TEDLTGVMWHDKNWL++FPL+KD+VLEYFSHSQFYDERCNNQQIKLQ LD KLLE+M GIEYQVTAD APGLF+ITKFLRS+ P +LEPLAMYYVL+GDVYQAPS+HAILSSRILQ LHHLRKAFETMQ+A+ VSVQG+Y WEP PV +NE+ED + G ++LSGAE+S +D MLF+VLE+NRQIH AH EKM A QG+K
Sbjct: 1 MVASSSNMAVEETEDLTGVMWHDKNWLSFFPLSKDNVLEYFSHSQFYDERCNNQQIKLQMLDNKLLESMAGIEYQVTADVAPGLFVITKFLRSLSPASLEPLAMYYVLDGDVYQAPSVHAILSSRILQCLHHLRKAFETMQNASTVSVQGQYWWEPSPVGVNEREDVGEGEGGTELLSGAERSGVDGMLFEVLERNRQIHGAHVEKMCASQGDK 214
BLAST of Gvermi12798.t1 vs. uniprot
Match: A0A7S3EG92_9RHOD (Mediator of RNA polymerase II transcription subunit 6 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EG92_9RHOD) HSP 1 Score: 144 bits (363), Expect = 1.040e-38 Identity = 79/214 (36.92%), Postives = 120/214 (56.07%), Query Frame = 0
Query: 14 EDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPA--PGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQ-------------------------SATAVSVQGK-YSWEPPPVCLNEQEDNSNADKGAQVLSGAEKSAIDAMLFDVLEKNRQI 199
E LT + W+DK WL+YFPL KD VLEYF+ S FY+ C N+Q K+QRL++ E +PGI Y+V D P LF+I K R+ + LA YY++ G Y++P H++L++RI+QS++HLR AF+ +Q S S QG YSW+P ++ D+ + + A V E+ +D +L+ +LE+NR++
Sbjct: 4 ESLTSLSWNDKVWLSYFPLDKDTVLEYFARSPFYNRSCLNEQYKMQRLEISAFENVPGILYEVVHDLTNEPLLFVIAKLERAENL-TVRTLAYYYIMNGVAYESPKAHSVLTTRIVQSMYHLRNAFDALQEKVGSHTCLLLRIVIPRRKPPDIQCSVQIPSEQGDWYSWKPSYGSSSDAGDDKDESEAAIV----ERQTVDRLLYGILERNRRV 212
BLAST of Gvermi12798.t1 vs. uniprot
Match: F4Q2D8_CAVFA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q2D8_CAVFA) HSP 1 Score: 140 bits (352), Expect = 3.760e-37 Identity = 67/142 (47.18%), Postives = 94/142 (66.20%), Query Frame = 0
Query: 12 QTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYS 153
+ EDLT +MW D WL FPL + VL YFS SQFYD++CNN+ +K+QRLD L+TM GIEYQV P LF+I + R P +++ +YY++ G +YQAP + A+L+SR+ QSL+HLR+AF+ + S + YS
Sbjct: 19 EVEDLTQIMWRDPLWLQMFPLNQMTVLTYFSMSQFYDKQCNNEILKMQRLDPSALKTMVGIEYQVINYQEPSLFLIARQYRE-SPGDVKVQTLYYIINGSIYQAPDLKAVLTSRLTQSLYHLRQAFDKIGSIVNWDIVNGYS 159
BLAST of Gvermi12798.t1 vs. uniprot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MED6_DICDI) HSP 1 Score: 140 bits (353), Expect = 4.030e-37 Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 0
Query: 11 EQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQEDNSNA 170
E+ DLT VMW D WL +PL +L+YFS+SQFYD+ CNN+Q+K+QRLDL L+ M G+EY++ P F+I K R I P ++ +YYV+ G++YQAP +H + SR+ QS+ HL +AF ++ S + YS P N+QE + A
Sbjct: 61 EEEPDLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQRLDLSALKNMDGLEYELIKFVEPSFFLIAKQTR-ISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNWDIVNGYSLNLDP--SNQQEKSKLA 217
BLAST of Gvermi12798.t1 vs. uniprot
Match: D3AXU0_POLPP (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AXU0_POLPP) HSP 1 Score: 135 bits (340), Expect = 1.400e-35 Identity = 72/183 (39.34%), Postives = 104/183 (56.83%), Query Frame = 0
Query: 11 EQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQEDNSNADKGAQVLSGAEKSAIDAMLFDVL 193
++ +DLT +MW D+ WL+ FPL K +L YFS SQFYD++CNN+ +K+QRLD L+TM G+EY+V D P LFII K R + +YYV+ G +YQ+P I +L SR++QSL HL AFE + S + Y +N N + +++++ K D FD L
Sbjct: 17 DEEQDLTQIMWRDQVWLSQFPLNKMTILNYFSLSQFYDKQCNNEILKMQRLDPSALKTMVGLEYEVVVDKEPLLFIIAKQNRLTANDAITQ-TLYYVINGSIYQSPDIKNVLESRMIQSLFHLINAFEKILSTVNWDIVKGYQ-------INLDGSQMNQQEKSKLVAFTRKQIEDTKRFDSL 191
BLAST of Gvermi12798.t1 vs. uniprot
Match: A0A8J4Q4B9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q4B9_9MYCE) HSP 1 Score: 133 bits (334), Expect = 1.930e-34 Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 0
Query: 11 EQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQEDNS 168
++ DLT VMW D WL FPL VL YF +SQFYD+ CNN+ +K+QRL+L L+TM GIEY++ PG ++I K R + P + +YYV+ G++YQ+P + ++ +SRI QSL+HL +AF + S + YS P N+Q++ S
Sbjct: 26 KEEPDLTQVMWRDPLWLQMFPLNAQTVLSYFYYSQFYDKSCNNEILKMQRLELSSLKTMIGIEYELAHFVEPGFYVIAKQNR-VSPTDAVIQTLYYVINGNIYQSPYLRSVFTSRISQSLYHLSEAFSNISSTINWDITSGYSMNLDP---NKQQEKS 179
BLAST of Gvermi12798.t1 vs. uniprot
Match: F0ZNV8_DICPU (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNV8_DICPU) HSP 1 Score: 132 bits (333), Expect = 4.350e-34 Identity = 68/155 (43.87%), Postives = 94/155 (60.65%), Query Frame = 0
Query: 11 EQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLNEQE 165
E+ D T VMW D WL FPL + VL YFS+SQFYD+ CNN+ +K+QRLD L+TM G+EY+V P ++I K R I P ++ +YYV+ G++YQAP + + +SRI QSL HL +AF + S + YS+ P N+QE
Sbjct: 68 EEEPDFTQVMWRDPVWLQMFPLNQHTVLTYFSYSQFYDKNCNNETLKMQRLDPAALKTMEGLEYEVAKFVEPSFYLIAKQNR-ISPSDVIIQQLYYVINGNIYQAPDLRQVFTSRISQSLFHLSEAFNKISSIINWDIINGYSFNFDP--SNQQE 219
BLAST of Gvermi12798.t1 vs. uniprot
Match: UPI000644C0CC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C0CC) HSP 1 Score: 130 bits (327), Expect = 1.010e-33 Identity = 63/139 (45.32%), Postives = 86/139 (61.87%), Query Frame = 0
Query: 14 EDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKY 152
EDLT +MW D WL PL K VL YFS SQFYD++CNN+ +K+QRLD L+TM GIEY+V P LF++ K R + P + +YY++ G +YQ+P I ++ SR++QSL HL AFE + S + Y
Sbjct: 26 EDLTQIMWRDPVWLQQIPLNKQTVLLYFSMSQFYDKQCNNEILKMQRLDPSALKTMIGIEYEVVMAQEPMLFLVAKQSR-VSPTDASVQTLYYIINGTIYQSPDIRSVFESRMVQSLFHLIHAFEKLLSTVTWDIVDGY 163
BLAST of Gvermi12798.t1 vs. uniprot
Match: M2XHR9_GALSU (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHR9_GALSU) HSP 1 Score: 125 bits (315), Expect = 2.400e-32 Identity = 70/187 (37.43%), Postives = 108/187 (57.75%), Query Frame = 0
Query: 10 AEQTEDLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMPGIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAFETMQSATAVSVQGKYSWEPPPVCLN-----EQEDNSNADKGAQVLSGAEKSAIDAMLFD 191
A EDL + W D +LA FPLT++ VL+YFS S FYD CNN+QI++Q+LD ++L + G EY VT P F++ K R R + L ++Y+++G VYQAPS+ ++L SR+ +S H+ ++FE++Q A+ +S + LN EQ+ N +K + L E A++ L D
Sbjct: 6 ASLVEDLAHLSWRDNWFLANFPLTQETVLDYFSGSPFYDPSCNNEQIRMQKLDPEVLYNLVGTEYMVTNQQEPVFFVVEKVYRYNRE-ETKTLQVFYIIQGTVYQAPSLRSLLLSRLSESFFHISESFESLQQASL------FSKVSSNLLLNFDREEEQDKVENLEKWTKTLP-QEPKAVETSLID 184
BLAST of Gvermi12798.t1 vs. uniprot
Match: A0A1Y1HUV0_KLENI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUV0_KLENI) HSP 1 Score: 122 bits (306), Expect = 1.050e-30 Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 0
Query: 15 DLTGVMWHDKNWLAYFPLTKDHVLEYFSHSQFYDERCNNQQIKLQRLDLKLLETMP-GIEYQVTADPAPGLFIITKFLRSIRPPNLEPLAMYYVLEGDVYQAPSIHAILSSRILQSLHHLRKAF 137
DLTGV++ D WL FPL + VL+YF+ S FYD CNN+++K Q DL LL TMP G EY V + P L++I K LR + P + PLA YYVL+G +YQAP + A+L SR +SL++++ F
Sbjct: 7 DLTGVLFSDPLWLQSFPLNRATVLDYFALSPFYDASCNNEKLKAQGKDLSLLSTMPYGPEYVVISAQEPNLYVIRKQLR-VSPDKMVPLAAYYVLDGSIYQAPHLQAVLGSRAERSLYYVQSGF 129 The following BLAST results are available for this feature:
BLAST of Gvermi12798.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gvermi12798.t1 ID=Gvermi12798.t1|Name=Gvermi12798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=245bpback to top |