Gvermi12695.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12695.t1
Unique NameGvermi12695.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1003478..1004110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1246995.AFR_06300
PFAMsNAD_binding_10
Max annot lvl201174|Actinobacteria
Evalue1.74e-36
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,2IGJW@201174|Actinobacteria,4DJ5I@85008|Micromonosporales
DescriptionNmrA-like family
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12695Gvermi12695Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1003478..1004110 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12695.t1.stop1Gvermi12695.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1003478..1003480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12695.t1.CDS1Gvermi12695.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1003478..1004110 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12695.t1.exon1Gvermi12695.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1003478..1004110 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12695.t1.start1Gvermi12695.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1004108..1004110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12695.t1Gvermi12695.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1003478..1004110 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12695.t1 ID=Gvermi12695.t1|Name=Gvermi12695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=211bp
MHITVFGANGQTGSEIVDQLLARGDSVTAAVRRPSTIHPREGLKVCKIDL
NDQDSVIEAVKGSDAIISALGTGGLRSARQKTTLYSDSIRVFRAVMREVG
IKRIIVLSSSGVDEEDSAPTFYNSLIRRYLMNTYIDMARMETVLTESPDL
EWTSVRLSYLIKCESKPYLVKDHSLDEGSFKIGFRDAGDFIAKEVHECKW
LQKMPALAYP*
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spliced messenger RNA

>Gvermi12695.t1 ID=Gvermi12695.t1|Name=Gvermi12695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_425:1003478..1004110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATATTACTGTGTTTGGCGCCAACGGTCAAACTGGTTCTGAAATCGT
AGATCAACTATTGGCAAGGGGAGATTCTGTAACGGCAGCCGTACGCCGTC
CTTCGACCATTCACCCACGCGAAGGTTTAAAAGTATGTAAGATAGATCTT
AATGACCAAGATTCCGTCATCGAAGCCGTGAAAGGGAGTGACGCCATTAT
CTCAGCGCTCGGAACAGGGGGTTTGCGAAGTGCGAGGCAGAAAACGACAC
TATACAGTGACTCTATCCGCGTCTTCAGAGCCGTAATGAGAGAAGTCGGA
ATCAAAAGAATCATCGTACTGTCCTCTTCGGGGGTTGATGAAGAAGATAG
CGCGCCTACGTTTTATAATTCTCTGATCCGAAGATATCTGATGAACACAT
ACATTGATATGGCCCGCATGGAAACAGTTCTCACGGAAAGCCCAGATTTG
GAGTGGACTAGTGTAAGATTATCGTACCTGATCAAGTGCGAAAGCAAACC
GTACTTGGTTAAGGATCATTCGCTTGATGAGGGTAGCTTCAAAATCGGCT
TCAGAGATGCTGGTGACTTCATTGCAAAGGAGGTTCACGAATGTAAGTGG
TTGCAAAAAATGCCGGCATTAGCATATCCGTAG
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protein sequence of Gvermi12695.t1

>Gvermi12695.t1 ID=Gvermi12695.t1|Name=Gvermi12695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=211bp
MHITVFGANGQTGSEIVDQLLARGDSVTAAVRRPSTIHPREGLKVCKIDL
NDQDSVIEAVKGSDAIISALGTGGLRSARQKTTLYSDSIRVFRAVMREVG
IKRIIVLSSSGVDEEDSAPTFYNSLIRRYLMNTYIDMARMETVLTESPDL
EWTSVRLSYLIKCESKPYLVKDHSLDEGSFKIGFRDAGDFIAKEVHECKW
LQKMPALAYP*
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mRNA from alignment at ScGOVlb_425:1003478..1004110-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12695.t1 ID=Gvermi12695.t1|Name=Gvermi12695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_425:1003478..1004110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATATTACTGTGTTTGGCGCCAACGGTCAAACTGGTTCTGAAATCGT
AGATCAACTATTGGCAAGGGGAGATTCTGTAACGGCAGCCGTACGCCGTC
CTTCGACCATTCACCCACGCGAAGGTTTAAAAGTATGTAAGATAGATCTT
AATGACCAAGATTCCGTCATCGAAGCCGTGAAAGGGAGTGACGCCATTAT
CTCAGCGCTCGGAACAGGGGGTTTGCGAAGTGCGAGGCAGAAAACGACAC
TATACAGTGACTCTATCCGCGTCTTCAGAGCCGTAATGAGAGAAGTCGGA
ATCAAAAGAATCATCGTACTGTCCTCTTCGGGGGTTGATGAAGAAGATAG
CGCGCCTACGTTTTATAATTCTCTGATCCGAAGATATCTGATGAACACAT
ACATTGATATGGCCCGCATGGAAACAGTTCTCACGGAAAGCCCAGATTTG
GAGTGGACTAGTGTAAGATTATCGTACCTGATCAAGTGCGAAAGCAAACC
GTACTTGGTTAAGGATCATTCGCTTGATGAGGGTAGCTTCAAAATCGGCT
TCAGAGATGCTGGTGACTTCATTGCAAAGGAGGTTCACGAATGTAAGTGG
TTGCAAAAAATGCCGGCATTAGCATATCCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1003478..1004110-

>Gvermi12695.t1 ID=Gvermi12695.t1|Name=Gvermi12695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=633bp|location=Sequence derived from alignment at ScGOVlb_425:1003478..1004110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATATTACTGTGTTTGGCGCCAACGGTCAAACTGGTTCTGAAATCGT
AGATCAACTATTGGCAAGGGGAGATTCTGTAACGGCAGCCGTACGCCGTC
CTTCGACCATTCACCCACGCGAAGGTTTAAAAGTATGTAAGATAGATCTT
AATGACCAAGATTCCGTCATCGAAGCCGTGAAAGGGAGTGACGCCATTAT
CTCAGCGCTCGGAACAGGGGGTTTGCGAAGTGCGAGGCAGAAAACGACAC
TATACAGTGACTCTATCCGCGTCTTCAGAGCCGTAATGAGAGAAGTCGGA
ATCAAAAGAATCATCGTACTGTCCTCTTCGGGGGTTGATGAAGAAGATAG
CGCGCCTACGTTTTATAATTCTCTGATCCGAAGATATCTGATGAACACAT
ACATTGATATGGCCCGCATGGAAACAGTTCTCACGGAAAGCCCAGATTTG
GAGTGGACTAGTGTAAGATTATCGTACCTGATCAAGTGCGAAAGCAAACC
GTACTTGGTTAAGGATCATTCGCTTGATGAGGGTAGCTTCAAAATCGGCT
TCAGAGATGCTGGTGACTTCATTGCAAAGGAGGTTCACGAATGTAAGTGG
TTGCAAAAAATGCCGGCATTAGCATATCCGTAG
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