Gvermi12654.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12654.t1
Unique NameGvermi12654.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:96452..97132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_11711T0
Max annot lvl4751|Fungi
Evalue1.11e-05
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12654Gvermi12654Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 96452..97132 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12654.t1.stop1Gvermi12654.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 96452..96454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12654.t1.CDS1Gvermi12654.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 96452..97132 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12654.t1.exon1Gvermi12654.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 96452..97132 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12654.t1.start1Gvermi12654.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 97130..97132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12654.t1Gvermi12654.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 96452..97132 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12654.t1 ID=Gvermi12654.t1|Name=Gvermi12654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=227bp
MMNKEDQKRNVFHYSFWGAKPMKATEDEHNKARFGFTMIESDEKQHSIDK
EYYVVDVTIPECVPDGDYVMSWIWYGGTGGNVETNEPQEPVPWGYFGDYW
SCSFVRIEGGTPLAPSCDPVFVNDVSQFSQDGCISANDEPCVCAYEPCKG
DGYYQKPKPFKYASQSRPITPENFGVSYDKSVKSNAPKETSVDIDLTEPG
NSSANVSYITPSPVSAEYEKLLSPSL*
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spliced messenger RNA

>Gvermi12654.t1 ID=Gvermi12654.t1|Name=Gvermi12654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=681bp|location=Sequence derived from alignment at ScGOVlb_425:96452..97132- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAACAAGGAAGACCAAAAGCGCAATGTCTTTCACTATAGTTTTTG
GGGTGCCAAGCCTATGAAAGCAACTGAAGACGAGCATAATAAAGCCCGAT
TTGGCTTCACCATGATCGAAAGCGATGAAAAACAGCACAGTATTGATAAA
GAATACTACGTGGTGGATGTTACTATCCCAGAATGTGTTCCAGATGGGGA
TTATGTCATGAGTTGGATTTGGTATGGAGGAACGGGTGGAAATGTGGAGA
CTAATGAACCGCAAGAACCAGTTCCGTGGGGATATTTCGGAGACTATTGG
TCATGTTCGTTTGTTCGTATCGAAGGGGGAACTCCACTGGCACCTTCTTG
TGACCCAGTTTTTGTGAATGATGTGTCGCAGTTTTCTCAAGATGGTTGTA
TATCTGCCAATGACGAGCCGTGTGTTTGTGCATACGAGCCGTGCAAGGGG
GATGGATATTATCAGAAGCCTAAACCGTTTAAATACGCAAGCCAATCGCG
GCCGATTACACCAGAAAACTTTGGGGTGTCATATGATAAAAGCGTTAAAT
CGAACGCTCCGAAAGAAACTTCAGTCGATATTGATTTAACTGAACCTGGA
AATTCTAGTGCAAACGTGTCTTACATAACGCCATCTCCGGTGTCTGCTGA
GTACGAAAAATTACTATCTCCATCTTTATAG
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protein sequence of Gvermi12654.t1

>Gvermi12654.t1 ID=Gvermi12654.t1|Name=Gvermi12654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=227bp
MMNKEDQKRNVFHYSFWGAKPMKATEDEHNKARFGFTMIESDEKQHSIDK
EYYVVDVTIPECVPDGDYVMSWIWYGGTGGNVETNEPQEPVPWGYFGDYW
SCSFVRIEGGTPLAPSCDPVFVNDVSQFSQDGCISANDEPCVCAYEPCKG
DGYYQKPKPFKYASQSRPITPENFGVSYDKSVKSNAPKETSVDIDLTEPG
NSSANVSYITPSPVSAEYEKLLSPSL*
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mRNA from alignment at ScGOVlb_425:96452..97132-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12654.t1 ID=Gvermi12654.t1|Name=Gvermi12654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=681bp|location=Sequence derived from alignment at ScGOVlb_425:96452..97132- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGAACAAGGAAGACCAAAAGCGCAATGTCTTTCACTATAGTTTTTG
GGGTGCCAAGCCTATGAAAGCAACTGAAGACGAGCATAATAAAGCCCGAT
TTGGCTTCACCATGATCGAAAGCGATGAAAAACAGCACAGTATTGATAAA
GAATACTACGTGGTGGATGTTACTATCCCAGAATGTGTTCCAGATGGGGA
TTATGTCATGAGTTGGATTTGGTATGGAGGAACGGGTGGAAATGTGGAGA
CTAATGAACCGCAAGAACCAGTTCCGTGGGGATATTTCGGAGACTATTGG
TCATGTTCGTTTGTTCGTATCGAAGGGGGAACTCCACTGGCACCTTCTTG
TGACCCAGTTTTTGTGAATGATGTGTCGCAGTTTTCTCAAGATGGTTGTA
TATCTGCCAATGACGAGCCGTGTGTTTGTGCATACGAGCCGTGCAAGGGG
GATGGATATTATCAGAAGCCTAAACCGTTTAAATACGCAAGCCAATCGCG
GCCGATTACACCAGAAAACTTTGGGGTGTCATATGATAAAAGCGTTAAAT
CGAACGCTCCGAAAGAAACTTCAGTCGATATTGATTTAACTGAACCTGGA
AATTCTAGTGCAAACGTGTCTTACATAACGCCATCTCCGGTGTCTGCTGA
GTACGAAAAATTACTATCTCCATCTTTATAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:96452..97132-

>Gvermi12654.t1 ID=Gvermi12654.t1|Name=Gvermi12654.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=681bp|location=Sequence derived from alignment at ScGOVlb_425:96452..97132- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGAACAAGGAAGACCAAAAGCGCAATGTCTTTCACTATAGTTTTTG
GGGTGCCAAGCCTATGAAAGCAACTGAAGACGAGCATAATAAAGCCCGAT
TTGGCTTCACCATGATCGAAAGCGATGAAAAACAGCACAGTATTGATAAA
GAATACTACGTGGTGGATGTTACTATCCCAGAATGTGTTCCAGATGGGGA
TTATGTCATGAGTTGGATTTGGTATGGAGGAACGGGTGGAAATGTGGAGA
CTAATGAACCGCAAGAACCAGTTCCGTGGGGATATTTCGGAGACTATTGG
TCATGTTCGTTTGTTCGTATCGAAGGGGGAACTCCACTGGCACCTTCTTG
TGACCCAGTTTTTGTGAATGATGTGTCGCAGTTTTCTCAAGATGGTTGTA
TATCTGCCAATGACGAGCCGTGTGTTTGTGCATACGAGCCGTGCAAGGGG
GATGGATATTATCAGAAGCCTAAACCGTTTAAATACGCAAGCCAATCGCG
GCCGATTACACCAGAAAACTTTGGGGTGTCATATGATAAAAGCGTTAAAT
CGAACGCTCCGAAAGAAACTTCAGTCGATATTGATTTAACTGAACCTGGA
AATTCTAGTGCAAACGTGTCTTACATAACGCCATCTCCGGTGTCTGCTGA
GTACGAAAAATTACTATCTCCATCTTTATAG
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