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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005707525.1 |
| Preferred name | CLCN2 |
| PFAMs | CBS,Voltage_CLC |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K05010,ko:K05011,ko:K05017,ko:K05018 |
| KEGG TC | 2.A.49.2.1,2.A.49.2.11,2.A.49.2.12,2.A.49.2.13,2.A.49.2.4,2.A.49.2.5,2.A.49.2.6,2.A.49.2.7 |
| KEGG Pathway | ko04966,ko04978,map04966,map04978 |
| GOs | GO:0001101,GO:0001508,GO:0001654,GO:0001655,GO:0001822,GO:0003008,GO:0003012,GO:0003014,GO:0003091,GO:0003097,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005856,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006833,GO:0006936,GO:0006950,GO:0007154,GO:0007275,GO:0007423,GO:0007431,GO:0007588,GO:0007589,GO:0008150,GO:0008308,GO:0008509,GO:0009268,GO:0009414,GO:0009415,GO:0009628,GO:0009925,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015318,GO:0015629,GO:0015698,GO:0016020,GO:0016021,GO:0016323,GO:0016324,GO:0019226,GO:0019227,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030104,GO:0030154,GO:0030321,GO:0030323,GO:0030324,GO:0030425,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0034220,GO:0035272,GO:0035295,GO:0035377,GO:0035637,GO:0036477,GO:0042044,GO:0042045,GO:0042221,GO:0042383,GO:0042391,GO:0042592,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043010,GO:0043025,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044297,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0045177,GO:0045178,GO:0046903,GO:0046983,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050877,GO:0050878,GO:0050891,GO:0050896,GO:0051179,GO:0051234,GO:0051592,GO:0055085,GO:0060041,GO:0060541,GO:0060689,GO:0065007,GO:0065008,GO:0070633,GO:0071944,GO:0072001,GO:0072053,GO:0097447,GO:0097458,GO:0098590,GO:0098656,GO:0098660,GO:0098661,GO:0098870,GO:0120025,GO:0120038,GO:1901700,GO:1902476 |
| Evalue | 4.56e-204 |
| EggNOG OGs | COG0038@1|root,KOG0476@2759|Eukaryota |
| Description | voltage-gated chloride channel activity |
| COG category | P |
| BRITE | ko00000,ko00001,ko04040 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi12700.t1 ID=Gvermi12700.t1|Name=Gvermi12700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=702bp MFPKPAPQLTPDHVDEVHFAFLDGHPHSTPTVADRRQLPLQPPQQIQHLA GTSAPTTIIHLARLLAFLVLLGIIPSTIIFLIDISVHNVFDLREAIIQLK LQPPLPMFLFCLTGVALCLASTFICHLCSTEAEGSGIPAMKSLMSGFYDK VKPALSLWALLAKTIGLVCAIGGGLPVGWEGPNVHISCIIAHHLSRLPPF RALRRDRALRMQIMACACAVGLASSFGTPIGGVLYALETTASFYLVPTFW KCVLATLAGSLVYDMLYKTPLVEAFDDTAFGDISYRGQLPAFMLLGALLG LLGAFFVRCVHTVYLLRKRRLPGTNRYVLLFVVGLAAALVQYPFPNFRHD PRHAINEFFSAAEMIELSRLDVLILVLIKFPLIVISIGLPIPAGVFIPCF LVGAGLGRLYGELLHLLFGQKIVAGGYAVVGAAAFTAGVTRALSVAVVIF EVTGQLKHTMPTLAAVLISVIVANGINRSLYDALIIMKRLPFMPHMRRDR TPDQKVTDIMRTDVVSLREVCSLVEIRETLDLYPHFDSFPIVTNNGLLLG SARRRSLLNLITRANGDGPSGDDMPKTSESEPLELRDPEKTQARHSADQE TDLSVMESEEENDQQHLIPKKEPERGHNPRTKLHPDLSPLVVTANTSLSQ LHFMFVMLMPTHAYVLIGGSLHGIVTRGDLVQSGEALSASSRNILSELAP A* back to topspliced messenger RNA >Gvermi12700.t1 ID=Gvermi12700.t1|Name=Gvermi12700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2106bp|location=Sequence derived from alignment at ScGOVlb_425:1060938..1063043+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTCCCCAAGCCCGCCCCGCAACTCACGCCAGACCATGTCGACGAGGT GCATTTCGCCTTTCTTGACGGCCATCCACATTCTACCCCCACCGTCGCAG ACCGTCGCCAGCTACCCTTACAGCCACCCCAGCAGATCCAACATCTCGCC GGCACCTCAGCCCCCACCACTATAATTCATCTTGCTCGCCTGCTGGCTTT TCTCGTGCTTCTCGGTATCATTCCGTCTACCATTATCTTCCTGATCGACA TCTCCGTCCACAATGTCTTCGATTTGCGCGAGGCTATCATCCAACTCAAA CTACAGCCCCCGCTTCCCATGTTTCTTTTCTGTCTCACCGGCGTTGCACT CTGTCTGGCATCCACTTTCATCTGCCACTTGTGCTCCACAGAGGCGGAGG GTTCGGGAATCCCGGCCATGAAGTCCCTCATGTCAGGCTTCTACGACAAA GTCAAGCCCGCCTTGTCGCTCTGGGCGCTGCTTGCAAAGACTATTGGTCT CGTGTGCGCAATTGGCGGCGGCCTCCCCGTCGGCTGGGAGGGACCAAACG TACATATTTCATGTATAATTGCTCACCATCTTTCGCGTCTTCCTCCCTTT CGAGCGCTTCGAAGGGATCGCGCCTTGCGTATGCAAATAATGGCTTGTGC CTGTGCTGTTGGTCTAGCCTCCAGCTTCGGCACTCCTATTGGCGGTGTGC TCTATGCTCTGGAGACCACCGCCTCCTTTTATCTTGTCCCGACGTTCTGG AAATGCGTTCTTGCCACTTTAGCCGGCTCTCTCGTTTACGATATGCTGTA CAAAACTCCACTGGTCGAAGCGTTTGACGACACTGCTTTTGGTGACATAT CCTACAGAGGACAGCTTCCGGCCTTTATGTTGCTTGGCGCCCTCTTGGGC TTGCTGGGAGCGTTTTTCGTTCGATGCGTTCATACCGTTTATCTTCTTCG AAAGCGACGCCTTCCTGGCACCAATCGCTACGTCTTACTGTTTGTCGTTG GACTTGCCGCAGCCCTCGTGCAGTACCCGTTTCCAAATTTCCGTCACGAC CCTCGTCATGCTATAAACGAATTCTTTTCCGCAGCTGAGATGATCGAACT TTCGCGATTAGACGTCCTCATTCTCGTGCTCATCAAGTTCCCCCTCATCG TTATTTCAATCGGCCTTCCGATTCCTGCTGGTGTATTCATACCCTGCTTC TTGGTTGGAGCTGGCTTAGGGCGTTTGTACGGCGAGCTTCTACATCTGCT CTTTGGTCAGAAGATTGTCGCGGGTGGGTATGCTGTTGTGGGAGCCGCAG CATTTACAGCGGGTGTGACCCGTGCCCTTTCGGTTGCCGTTGTCATATTT GAAGTCACCGGACAGCTCAAACACACTATGCCCACTCTGGCAGCAGTGTT AATATCCGTCATTGTCGCCAATGGTATAAATCGTTCCCTTTATGATGCTC TCATAATTATGAAGCGGCTGCCCTTCATGCCGCATATGAGAAGAGATAGA ACACCGGATCAGAAAGTAACGGATATAATGCGCACTGACGTGGTATCGCT TAGGGAGGTATGTTCTCTTGTAGAGATACGAGAAACTTTGGACTTATATC CTCATTTTGACTCATTTCCGATTGTGACAAACAACGGGCTATTACTTGGG AGTGCTCGGCGTAGAAGTTTGTTGAATTTGATAACGCGTGCCAATGGCGA TGGACCATCAGGGGATGACATGCCCAAGACTTCGGAATCGGAGCCACTTG AGTTGCGAGATCCTGAAAAGACGCAGGCAAGGCATTCAGCGGACCAGGAG ACAGATTTATCCGTGATGGAAAGCGAAGAGGAGAATGATCAACAGCACTT AATACCGAAGAAAGAGCCAGAACGTGGGCACAATCCACGCACAAAGTTAC ATCCAGACCTCAGCCCATTGGTCGTGACTGCGAATACCTCTTTAAGCCAA CTGCACTTTATGTTTGTCATGCTTATGCCTACGCATGCATACGTACTAAT AGGTGGGTCTTTACATGGTATTGTAACACGAGGTGATTTGGTTCAAAGCG GGGAAGCCCTCAGCGCATCGTCGCGAAACATTCTTTCTGAACTTGCTCCC GCGTAA back to topprotein sequence of Gvermi12700.t1 >Gvermi12700.t1 ID=Gvermi12700.t1|Name=Gvermi12700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=702bp
MFPKPAPQLTPDHVDEVHFAFLDGHPHSTPTVADRRQLPLQPPQQIQHLA GTSAPTTIIHLARLLAFLVLLGIIPSTIIFLIDISVHNVFDLREAIIQLK LQPPLPMFLFCLTGVALCLASTFICHLCSTEAEGSGIPAMKSLMSGFYDK VKPALSLWALLAKTIGLVCAIGGGLPVGWEGPNVHISCIIAHHLSRLPPF RALRRDRALRMQIMACACAVGLASSFGTPIGGVLYALETTASFYLVPTFW KCVLATLAGSLVYDMLYKTPLVEAFDDTAFGDISYRGQLPAFMLLGALLG LLGAFFVRCVHTVYLLRKRRLPGTNRYVLLFVVGLAAALVQYPFPNFRHD PRHAINEFFSAAEMIELSRLDVLILVLIKFPLIVISIGLPIPAGVFIPCF LVGAGLGRLYGELLHLLFGQKIVAGGYAVVGAAAFTAGVTRALSVAVVIF EVTGQLKHTMPTLAAVLISVIVANGINRSLYDALIIMKRLPFMPHMRRDR TPDQKVTDIMRTDVVSLREVCSLVEIRETLDLYPHFDSFPIVTNNGLLLG SARRRSLLNLITRANGDGPSGDDMPKTSESEPLELRDPEKTQARHSADQE TDLSVMESEEENDQQHLIPKKEPERGHNPRTKLHPDLSPLVVTANTSLSQ LHFMFVMLMPTHAYVLIGGSLHGIVTRGDLVQSGEALSASSRNILSELAP A* back to topmRNA from alignment at ScGOVlb_425:1060938..1063043+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi12700.t1 ID=Gvermi12700.t1|Name=Gvermi12700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2106bp|location=Sequence derived from alignment at ScGOVlb_425:1060938..1063043+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTTCCCCAAGCCCGCCCCGCAACTCACGCCAGACCATGTCGACGAGGT
GCATTTCGCCTTTCTTGACGGCCATCCACATTCTACCCCCACCGTCGCAG
ACCGTCGCCAGCTACCCTTACAGCCACCCCAGCAGATCCAACATCTCGCC
GGCACCTCAGCCCCCACCACTATAATTCATCTTGCTCGCCTGCTGGCTTT
TCTCGTGCTTCTCGGTATCATTCCGTCTACCATTATCTTCCTGATCGACA
TCTCCGTCCACAATGTCTTCGATTTGCGCGAGGCTATCATCCAACTCAAA
CTACAGCCCCCGCTTCCCATGTTTCTTTTCTGTCTCACCGGCGTTGCACT
CTGTCTGGCATCCACTTTCATCTGCCACTTGTGCTCCACAGAGGCGGAGG
GTTCGGGAATCCCGGCCATGAAGTCCCTCATGTCAGGCTTCTACGACAAA
GTCAAGCCCGCCTTGTCGCTCTGGGCGCTGCTTGCAAAGACTATTGGTCT
CGTGTGCGCAATTGGCGGCGGCCTCCCCGTCGGCTGGGAGGGACCAAACG
TACATATTTCATGTATAATTGCTCACCATCTTTCGCGTCTTCCTCCCTTT
CGAGCGCTTCGAAGGGATCGCGCCTTGCGTATGCAAATAATGGCTTGTGC
CTGTGCTGTTGGTCTAGCCTCCAGCTTCGGCACTCCTATTGGCGGTGTGC
TCTATGCTCTGGAGACCACCGCCTCCTTTTATCTTGTCCCGACGTTCTGG
AAATGCGTTCTTGCCACTTTAGCCGGCTCTCTCGTTTACGATATGCTGTA
CAAAACTCCACTGGTCGAAGCGTTTGACGACACTGCTTTTGGTGACATAT
CCTACAGAGGACAGCTTCCGGCCTTTATGTTGCTTGGCGCCCTCTTGGGC
TTGCTGGGAGCGTTTTTCGTTCGATGCGTTCATACCGTTTATCTTCTTCG
AAAGCGACGCCTTCCTGGCACCAATCGCTACGTCTTACTGTTTGTCGTTG
GACTTGCCGCAGCCCTCGTGCAGTACCCGTTTCCAAATTTCCGTCACGAC
CCTCGTCATGCTATAAACGAATTCTTTTCCGCAGCTGAGATGATCGAACT
TTCGCGATTAGACGTCCTCATTCTCGTGCTCATCAAGTTCCCCCTCATCG
TTATTTCAATCGGCCTTCCGATTCCTGCTGGTGTATTCATACCCTGCTTC
TTGGTTGGAGCTGGCTTAGGGCGTTTGTACGGCGAGCTTCTACATCTGCT
CTTTGGTCAGAAGATTGTCGCGGGTGGGTATGCTGTTGTGGGAGCCGCAG
CATTTACAGCGGGTGTGACCCGTGCCCTTTCGGTTGCCGTTGTCATATTT
GAAGTCACCGGACAGCTCAAACACACTATGCCCACTCTGGCAGCAGTGTT
AATATCCGTCATTGTCGCCAATGGTATAAATCGTTCCCTTTATGATGCTC
TCATAATTATGAAGCGGCTGCCCTTCATGCCGCATATGAGAAGAGATAGA
ACACCGGATCAGAAAGTAACGGATATAATGCGCACTGACGTGGTATCGCT
TAGGGAGGTATGTTCTCTTGTAGAGATACGAGAAACTTTGGACTTATATC
CTCATTTTGACTCATTTCCGATTGTGACAAACAACGGGCTATTACTTGGG
AGTGCTCGGCGTAGAAGTTTGTTGAATTTGATAACGCGTGCCAATGGCGA
TGGACCATCAGGGGATGACATGCCCAAGACTTCGGAATCGGAGCCACTTG
AGTTGCGAGATCCTGAAAAGACGCAGGCAAGGCATTCAGCGGACCAGGAG
ACAGATTTATCCGTGATGGAAAGCGAAGAGGAGAATGATCAACAGCACTT
AATACCGAAGAAAGAGCCAGAACGTGGGCACAATCCACGCACAAAGTTAC
ATCCAGACCTCAGCCCATTGGTCGTGACTGCGAATACCTCTTTAAGCCAA
CTGCACTTTATGTTTGTCATGCTTATGCCTACGCATGCATACGTACTAAT
AGGTGGGTCTTTACATGGTATTGTAACACGAGGTGATTTGGTTCAAAGCG
GGGAAGCCCTCAGCGCATCGTCGCGAAACATTCTTTCTGAACTTGCTCCC
GCGTAA back to topCoding sequence (CDS) from alignment at ScGOVlb_425:1060938..1063043+ >Gvermi12700.t1 ID=Gvermi12700.t1|Name=Gvermi12700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2106bp|location=Sequence derived from alignment at ScGOVlb_425:1060938..1063043+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTTCCCCAAGCCCGCCCCGCAACTCACGCCAGACCATGTCGACGAGGT GCATTTCGCCTTTCTTGACGGCCATCCACATTCTACCCCCACCGTCGCAG ACCGTCGCCAGCTACCCTTACAGCCACCCCAGCAGATCCAACATCTCGCC GGCACCTCAGCCCCCACCACTATAATTCATCTTGCTCGCCTGCTGGCTTT TCTCGTGCTTCTCGGTATCATTCCGTCTACCATTATCTTCCTGATCGACA TCTCCGTCCACAATGTCTTCGATTTGCGCGAGGCTATCATCCAACTCAAA CTACAGCCCCCGCTTCCCATGTTTCTTTTCTGTCTCACCGGCGTTGCACT CTGTCTGGCATCCACTTTCATCTGCCACTTGTGCTCCACAGAGGCGGAGG GTTCGGGAATCCCGGCCATGAAGTCCCTCATGTCAGGCTTCTACGACAAA GTCAAGCCCGCCTTGTCGCTCTGGGCGCTGCTTGCAAAGACTATTGGTCT CGTGTGCGCAATTGGCGGCGGCCTCCCCGTCGGCTGGGAGGGACCAAACG TACATATTTCATGTATAATTGCTCACCATCTTTCGCGTCTTCCTCCCTTT CGAGCGCTTCGAAGGGATCGCGCCTTGCGTATGCAAATAATGGCTTGTGC CTGTGCTGTTGGTCTAGCCTCCAGCTTCGGCACTCCTATTGGCGGTGTGC TCTATGCTCTGGAGACCACCGCCTCCTTTTATCTTGTCCCGACGTTCTGG AAATGCGTTCTTGCCACTTTAGCCGGCTCTCTCGTTTACGATATGCTGTA CAAAACTCCACTGGTCGAAGCGTTTGACGACACTGCTTTTGGTGACATAT CCTACAGAGGACAGCTTCCGGCCTTTATGTTGCTTGGCGCCCTCTTGGGC TTGCTGGGAGCGTTTTTCGTTCGATGCGTTCATACCGTTTATCTTCTTCG AAAGCGACGCCTTCCTGGCACCAATCGCTACGTCTTACTGTTTGTCGTTG GACTTGCCGCAGCCCTCGTGCAGTACCCGTTTCCAAATTTCCGTCACGAC CCTCGTCATGCTATAAACGAATTCTTTTCCGCAGCTGAGATGATCGAACT TTCGCGATTAGACGTCCTCATTCTCGTGCTCATCAAGTTCCCCCTCATCG TTATTTCAATCGGCCTTCCGATTCCTGCTGGTGTATTCATACCCTGCTTC TTGGTTGGAGCTGGCTTAGGGCGTTTGTACGGCGAGCTTCTACATCTGCT CTTTGGTCAGAAGATTGTCGCGGGTGGGTATGCTGTTGTGGGAGCCGCAG CATTTACAGCGGGTGTGACCCGTGCCCTTTCGGTTGCCGTTGTCATATTT GAAGTCACCGGACAGCTCAAACACACTATGCCCACTCTGGCAGCAGTGTT AATATCCGTCATTGTCGCCAATGGTATAAATCGTTCCCTTTATGATGCTC TCATAATTATGAAGCGGCTGCCCTTCATGCCGCATATGAGAAGAGATAGA ACACCGGATCAGAAAGTAACGGATATAATGCGCACTGACGTGGTATCGCT TAGGGAGGTATGTTCTCTTGTAGAGATACGAGAAACTTTGGACTTATATC CTCATTTTGACTCATTTCCGATTGTGACAAACAACGGGCTATTACTTGGG AGTGCTCGGCGTAGAAGTTTGTTGAATTTGATAACGCGTGCCAATGGCGA TGGACCATCAGGGGATGACATGCCCAAGACTTCGGAATCGGAGCCACTTG AGTTGCGAGATCCTGAAAAGACGCAGGCAAGGCATTCAGCGGACCAGGAG ACAGATTTATCCGTGATGGAAAGCGAAGAGGAGAATGATCAACAGCACTT AATACCGAAGAAAGAGCCAGAACGTGGGCACAATCCACGCACAAAGTTAC ATCCAGACCTCAGCCCATTGGTCGTGACTGCGAATACCTCTTTAAGCCAA CTGCACTTTATGTTTGTCATGCTTATGCCTACGCATGCATACGTACTAAT AGGTGGGTCTTTACATGGTATTGTAACACGAGGTGATTTGGTTCAAAGCG GGGAAGCCCTCAGCGCATCGTCGCGAAACATTCTTTCTGAACTTGCTCCC GCGTAA back to top
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