Gvermi12749.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12749.t1
Unique NameGvermi12749.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1372690..1373214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702349.1
Preferred nameUBTD2
PFAMsUBD,ubiquitin
Max annot lvl2759|Eukaryota
KEGG koko:K13123
KEGG ModuleM00355
Evalue2.1e-32
EggNOG OGsKOG0013@1|root,KOG0013@2759|Eukaryota
DescriptionUbiquitin-binding domain
COG categoryADK
BRITEko00000,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12749Gvermi12749Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1372690..1373214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12749.t1Gvermi12749.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1372690..1373214 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12749.t1.start1Gvermi12749.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1372690..1372692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12749.t1.CDS1Gvermi12749.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1372690..1372902 +
Gvermi12749.t1.CDS2Gvermi12749.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1372975..1373214 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12749.t1.exon1Gvermi12749.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1372690..1372902 +
Gvermi12749.t1.exon2Gvermi12749.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1372975..1373214 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12749.t1.intron1Gvermi12749.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1372903..1372974 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12749.t1.stop1Gvermi12749.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1373212..1373214 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12749.t1 ID=Gvermi12749.t1|Name=Gvermi12749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=151bp
MGCASSKDEPRTDGAPSPPWDGHVRPPRAWKVEPAISSQHLQRLRNEFWE
TRVEGRPEMWQALRFAAESESDELRDETVKAAGLRPANRRCTMQSMFDEL
GAMYEIPVYALIDPLNLDQQPVHEQFKHAAKAVTDYVNSHDKSKRTPRAL
*
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spliced messenger RNA

>Gvermi12749.t1 ID=Gvermi12749.t1|Name=Gvermi12749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=453bp|location=Sequence derived from alignment at ScGOVlb_425:1372690..1373214+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGTGCTTCGTCGAAGGATGAGCCCCGCACCGACGGTGCCCCATC
CCCGCCCTGGGATGGCCACGTTCGACCGCCGCGAGCGTGGAAAGTTGAGC
CCGCTATCTCGTCCCAACATCTTCAGCGCCTGCGCAACGAGTTTTGGGAG
ACCAGAGTCGAGGGACGCCCGGAAATGTGGCAGGCGCTCCGCTTTGCCGC
CGAGTCTGAGTCCGATGAATTGAGAGATGAAACTGTCAAGGCCGCTGGAT
TGAGACCTGCTAATCGTCGATGCACCATGCAGTCTATGTTTGACGAACTG
GGCGCTATGTACGAGATTCCCGTGTACGCCTTGATTGATCCCTTGAATTT
GGATCAGCAACCAGTGCATGAGCAGTTCAAGCATGCTGCCAAAGCCGTCA
CTGATTACGTCAATTCGCATGACAAGTCGAAGCGCACGCCGAGAGCATTG
TGA
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protein sequence of Gvermi12749.t1

>Gvermi12749.t1 ID=Gvermi12749.t1|Name=Gvermi12749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=151bp
MGCASSKDEPRTDGAPSPPWDGHVRPPRAWKVEPAISSQHLQRLRNEFWE
TRVEGRPEMWQALRFAAESESDELRDETVKAAGLRPANRRCTMQSMFDEL
GAMYEIPVYALIDPLNLDQQPVHEQFKHAAKAVTDYVNSHDKSKRTPRAL
*
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mRNA from alignment at ScGOVlb_425:1372690..1373214+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12749.t1 ID=Gvermi12749.t1|Name=Gvermi12749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=525bp|location=Sequence derived from alignment at ScGOVlb_425:1372690..1373214+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTGTGCTTCGTCGAAGGATGAGCCCCGCACCGACGGTGCCCCATC
CCCGCCCTGGGATGGCCACGTTCGACCGCCGCGAGCGTGGAAAGTTGAGC
CCGCTATCTCGTCCCAACATCTTCAGCGCCTGCGCAACGAGTTTTGGGAG
ACCAGAGTCGAGGGACGCCCGGAAATGTGGCAGGCGCTCCGCTTTGCCGC
CGAGTCTGAGTCCGTAAGTTCTCGACACCTCCTCGTGCGCCCTTTTCGCC
TGTTTCTTACCTGCTTGTGAGCACTGTCTGCGCAGGATGAATTGAGAGAT
GAAACTGTCAAGGCCGCTGGATTGAGACCTGCTAATCGTCGATGCACCAT
GCAGTCTATGTTTGACGAACTGGGCGCTATGTACGAGATTCCCGTGTACG
CCTTGATTGATCCCTTGAATTTGGATCAGCAACCAGTGCATGAGCAGTTC
AAGCATGCTGCCAAAGCCGTCACTGATTACGTCAATTCGCATGACAAGTC
GAAGCGCACGCCGAGAGCATTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1372690..1373214+

>Gvermi12749.t1 ID=Gvermi12749.t1|Name=Gvermi12749.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=453bp|location=Sequence derived from alignment at ScGOVlb_425:1372690..1373214+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTGTGCTTCGTCGAAGGATGAGCCCCGCACCGACGGTGCCCCATC
CCCGCCCTGGGATGGCCACGTTCGACCGCCGCGAGCGTGGAAAGTTGAGC
CCGCTATCTCGTCCCAACATCTTCAGCGCCTGCGCAACGAGTTTTGGGAG
ACCAGAGTCGAGGGACGCCCGGAAATGTGGCAGGCGCTCCGCTTTGCCGC
CGAGTCTGAGTCCGATGAATTGAGAGATGAAACTGTCAAGGCCGCTGGAT
TGAGACCTGCTAATCGTCGATGCACCATGCAGTCTATGTTTGACGAACTG
GGCGCTATGTACGAGATTCCCGTGTACGCCTTGATTGATCCCTTGAATTT
GGATCAGCAACCAGTGCATGAGCAGTTCAAGCATGCTGCCAAAGCCGTCA
CTGATTACGTCAATTCGCATGACAAGTCGAAGCGCACGCCGAGAGCATTG
TGA
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