Gvermi12671.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12671.t1
Unique NameGvermi12671.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length533
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:272892..274490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123060.JONP01000002_gene930
PFAMsGMC_oxred_C,GMC_oxred_N
Max annot lvl204441|Rhodospirillales
Evalue6.76e-38
EggNOG OGsCOG2303@1|root,COG2303@2|Bacteria,1MV19@1224|Proteobacteria,2TQKQ@28211|Alphaproteobacteria,2JVAC@204441|Rhodospirillales
DescriptionGMC oxidoreductase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12671Gvermi12671Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 272892..274490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12671.t1.stop1Gvermi12671.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 272892..272894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12671.t1.CDS1Gvermi12671.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 272892..274490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12671.t1.exon1Gvermi12671.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 272892..274490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12671.t1.start1Gvermi12671.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 274488..274490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12671.t1Gvermi12671.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 272892..274490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12671.t1 ID=Gvermi12671.t1|Name=Gvermi12671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=533bp
MSAFRLVYHTFVLLAFFCHAFADDFTDFLIVGGGTSGCILAARLCTAFPN
LHTTLLERGLPRSAQSDFLVEAPRNLYQTWSDRSITEFFESLPDDGIGGR
VTPTLTGTTLGGSSAINGMQWTVPTAGSVESWQIQGLDTATASAYFRRAY
DAVGFAPPQSPLRYADDYVSAAMRAGFMPSDDPIVQPPVSAWQNRLAIDS
EFRRNDACTAYLSPVRNAACSQNLRVLEGATADKILIENVAGGGKRATAV
DTISTSDRVSRNRVRARKRIILSAGPYGSPTLLQRSGVGSTATLASAGVS
QVVDLPVGERSTTRASVGVSSTFSGVPDEPANDAQAVASSLQRTIWESGN
GGLLGTPVTAANGRTGDDGYFTATLVPFFPGSPEVRTGCYHNTNQTGYIR
IRDSNPFNTPLLKNNLLSDPSDVGRLVRCLQKVVQIHQSFPTLFRMSLTA
PANGVIDEQYVRQNANTGAHIVGGCAVGDVLTDELQVKGVDRLMVVDASA
IPQMPRSAGPAASVYMLAEFMADKIIAEQGGV*
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spliced messenger RNA

>Gvermi12671.t1 ID=Gvermi12671.t1|Name=Gvermi12671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at ScGOVlb_425:272892..274490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGTTTCGTCTCGTTTACCACACTTTTGTCCTCCTCGCCTTCTT
CTGTCATGCCTTTGCCGACGATTTTACGGACTTTCTGATCGTGGGCGGCG
GCACTTCGGGATGCATTCTTGCAGCTCGTCTCTGCACCGCCTTCCCCAAT
CTGCACACCACCCTGCTCGAACGGGGACTCCCTCGCTCCGCCCAGTCCGA
CTTCCTCGTCGAAGCCCCGCGAAACCTATACCAGACCTGGTCTGACCGGT
CCATCACGGAGTTCTTCGAGTCGCTGCCAGACGATGGTATCGGCGGTAGG
GTCACACCCACGCTGACGGGCACAACCTTGGGGGGCTCCTCCGCAATCAA
CGGCATGCAGTGGACCGTGCCCACCGCGGGCTCTGTCGAATCGTGGCAGA
TCCAAGGTCTGGACACCGCCACCGCTTCGGCCTACTTTCGTCGCGCCTAC
GATGCCGTGGGCTTTGCCCCGCCGCAGTCCCCGCTGCGGTACGCAGACGA
CTACGTGAGCGCGGCGATGCGCGCGGGATTTATGCCGTCCGATGACCCCA
TTGTGCAGCCGCCCGTGTCTGCGTGGCAAAACCGTCTGGCGATTGACAGC
GAGTTCCGTCGCAACGATGCGTGCACCGCGTACCTATCGCCGGTTCGCAA
CGCGGCGTGTTCGCAGAACTTGAGGGTGCTGGAGGGTGCCACTGCGGACA
AGATTCTCATAGAGAACGTGGCGGGGGGGGGGAAACGCGCAACTGCAGTG
GACACCATTTCCACCTCAGACCGCGTCTCACGCAACCGCGTCAGGGCGAG
GAAAAGGATCATTCTTTCTGCGGGCCCCTACGGATCGCCGACGCTGCTGC
AGCGCTCCGGCGTCGGCAGCACGGCCACTTTGGCTTCTGCAGGAGTTTCC
CAGGTTGTTGACTTGCCCGTGGGCGAGCGCTCGACGACTCGGGCAAGCGT
AGGGGTGTCGTCCACGTTCAGCGGCGTTCCTGATGAGCCCGCTAATGACG
CGCAGGCCGTGGCAAGTTCTCTGCAGCGGACAATATGGGAGTCTGGCAAT
GGCGGCTTGTTGGGCACGCCTGTCACAGCCGCAAATGGGCGAACGGGTGA
TGACGGTTATTTCACTGCTACGCTTGTCCCGTTCTTCCCCGGGAGCCCGG
AAGTGAGGACAGGTTGTTATCATAACACCAATCAAACAGGCTACATTCGA
ATTCGCGATTCCAATCCTTTCAATACGCCCTTGCTGAAGAACAATCTTCT
CAGCGACCCGAGCGATGTCGGACGGCTGGTGCGCTGTCTGCAAAAGGTTG
TTCAGATTCACCAGAGTTTTCCAACTTTGTTTCGGATGAGCCTTACTGCG
CCCGCAAACGGTGTCATAGATGAACAGTACGTGAGGCAGAATGCAAACAC
GGGTGCTCACATCGTAGGAGGGTGCGCGGTGGGAGATGTTCTCACGGATG
AGTTGCAGGTCAAAGGCGTGGATAGATTAATGGTAGTTGACGCGTCTGCT
ATACCGCAGATGCCACGTTCAGCTGGACCAGCCGCCTCAGTTTATATGTT
GGCCGAGTTCATGGCCGATAAAATTATCGCCGAGCAGGGCGGCGTGTGA
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protein sequence of Gvermi12671.t1

>Gvermi12671.t1 ID=Gvermi12671.t1|Name=Gvermi12671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=533bp
MSAFRLVYHTFVLLAFFCHAFADDFTDFLIVGGGTSGCILAARLCTAFPN
LHTTLLERGLPRSAQSDFLVEAPRNLYQTWSDRSITEFFESLPDDGIGGR
VTPTLTGTTLGGSSAINGMQWTVPTAGSVESWQIQGLDTATASAYFRRAY
DAVGFAPPQSPLRYADDYVSAAMRAGFMPSDDPIVQPPVSAWQNRLAIDS
EFRRNDACTAYLSPVRNAACSQNLRVLEGATADKILIENVAGGGKRATAV
DTISTSDRVSRNRVRARKRIILSAGPYGSPTLLQRSGVGSTATLASAGVS
QVVDLPVGERSTTRASVGVSSTFSGVPDEPANDAQAVASSLQRTIWESGN
GGLLGTPVTAANGRTGDDGYFTATLVPFFPGSPEVRTGCYHNTNQTGYIR
IRDSNPFNTPLLKNNLLSDPSDVGRLVRCLQKVVQIHQSFPTLFRMSLTA
PANGVIDEQYVRQNANTGAHIVGGCAVGDVLTDELQVKGVDRLMVVDASA
IPQMPRSAGPAASVYMLAEFMADKIIAEQGGV*
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mRNA from alignment at ScGOVlb_425:272892..274490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12671.t1 ID=Gvermi12671.t1|Name=Gvermi12671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at ScGOVlb_425:272892..274490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGTTTCGTCTCGTTTACCACACTTTTGTCCTCCTCGCCTTCTT
CTGTCATGCCTTTGCCGACGATTTTACGGACTTTCTGATCGTGGGCGGCG
GCACTTCGGGATGCATTCTTGCAGCTCGTCTCTGCACCGCCTTCCCCAAT
CTGCACACCACCCTGCTCGAACGGGGACTCCCTCGCTCCGCCCAGTCCGA
CTTCCTCGTCGAAGCCCCGCGAAACCTATACCAGACCTGGTCTGACCGGT
CCATCACGGAGTTCTTCGAGTCGCTGCCAGACGATGGTATCGGCGGTAGG
GTCACACCCACGCTGACGGGCACAACCTTGGGGGGCTCCTCCGCAATCAA
CGGCATGCAGTGGACCGTGCCCACCGCGGGCTCTGTCGAATCGTGGCAGA
TCCAAGGTCTGGACACCGCCACCGCTTCGGCCTACTTTCGTCGCGCCTAC
GATGCCGTGGGCTTTGCCCCGCCGCAGTCCCCGCTGCGGTACGCAGACGA
CTACGTGAGCGCGGCGATGCGCGCGGGATTTATGCCGTCCGATGACCCCA
TTGTGCAGCCGCCCGTGTCTGCGTGGCAAAACCGTCTGGCGATTGACAGC
GAGTTCCGTCGCAACGATGCGTGCACCGCGTACCTATCGCCGGTTCGCAA
CGCGGCGTGTTCGCAGAACTTGAGGGTGCTGGAGGGTGCCACTGCGGACA
AGATTCTCATAGAGAACGTGGCGGGGGGGGGGAAACGCGCAACTGCAGTG
GACACCATTTCCACCTCAGACCGCGTCTCACGCAACCGCGTCAGGGCGAG
GAAAAGGATCATTCTTTCTGCGGGCCCCTACGGATCGCCGACGCTGCTGC
AGCGCTCCGGCGTCGGCAGCACGGCCACTTTGGCTTCTGCAGGAGTTTCC
CAGGTTGTTGACTTGCCCGTGGGCGAGCGCTCGACGACTCGGGCAAGCGT
AGGGGTGTCGTCCACGTTCAGCGGCGTTCCTGATGAGCCCGCTAATGACG
CGCAGGCCGTGGCAAGTTCTCTGCAGCGGACAATATGGGAGTCTGGCAAT
GGCGGCTTGTTGGGCACGCCTGTCACAGCCGCAAATGGGCGAACGGGTGA
TGACGGTTATTTCACTGCTACGCTTGTCCCGTTCTTCCCCGGGAGCCCGG
AAGTGAGGACAGGTTGTTATCATAACACCAATCAAACAGGCTACATTCGA
ATTCGCGATTCCAATCCTTTCAATACGCCCTTGCTGAAGAACAATCTTCT
CAGCGACCCGAGCGATGTCGGACGGCTGGTGCGCTGTCTGCAAAAGGTTG
TTCAGATTCACCAGAGTTTTCCAACTTTGTTTCGGATGAGCCTTACTGCG
CCCGCAAACGGTGTCATAGATGAACAGTACGTGAGGCAGAATGCAAACAC
GGGTGCTCACATCGTAGGAGGGTGCGCGGTGGGAGATGTTCTCACGGATG
AGTTGCAGGTCAAAGGCGTGGATAGATTAATGGTAGTTGACGCGTCTGCT
ATACCGCAGATGCCACGTTCAGCTGGACCAGCCGCCTCAGTTTATATGTT
GGCCGAGTTCATGGCCGATAAAATTATCGCCGAGCAGGGCGGCGTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:272892..274490-

>Gvermi12671.t1 ID=Gvermi12671.t1|Name=Gvermi12671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1599bp|location=Sequence derived from alignment at ScGOVlb_425:272892..274490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCGTTTCGTCTCGTTTACCACACTTTTGTCCTCCTCGCCTTCTT
CTGTCATGCCTTTGCCGACGATTTTACGGACTTTCTGATCGTGGGCGGCG
GCACTTCGGGATGCATTCTTGCAGCTCGTCTCTGCACCGCCTTCCCCAAT
CTGCACACCACCCTGCTCGAACGGGGACTCCCTCGCTCCGCCCAGTCCGA
CTTCCTCGTCGAAGCCCCGCGAAACCTATACCAGACCTGGTCTGACCGGT
CCATCACGGAGTTCTTCGAGTCGCTGCCAGACGATGGTATCGGCGGTAGG
GTCACACCCACGCTGACGGGCACAACCTTGGGGGGCTCCTCCGCAATCAA
CGGCATGCAGTGGACCGTGCCCACCGCGGGCTCTGTCGAATCGTGGCAGA
TCCAAGGTCTGGACACCGCCACCGCTTCGGCCTACTTTCGTCGCGCCTAC
GATGCCGTGGGCTTTGCCCCGCCGCAGTCCCCGCTGCGGTACGCAGACGA
CTACGTGAGCGCGGCGATGCGCGCGGGATTTATGCCGTCCGATGACCCCA
TTGTGCAGCCGCCCGTGTCTGCGTGGCAAAACCGTCTGGCGATTGACAGC
GAGTTCCGTCGCAACGATGCGTGCACCGCGTACCTATCGCCGGTTCGCAA
CGCGGCGTGTTCGCAGAACTTGAGGGTGCTGGAGGGTGCCACTGCGGACA
AGATTCTCATAGAGAACGTGGCGGGGGGGGGGAAACGCGCAACTGCAGTG
GACACCATTTCCACCTCAGACCGCGTCTCACGCAACCGCGTCAGGGCGAG
GAAAAGGATCATTCTTTCTGCGGGCCCCTACGGATCGCCGACGCTGCTGC
AGCGCTCCGGCGTCGGCAGCACGGCCACTTTGGCTTCTGCAGGAGTTTCC
CAGGTTGTTGACTTGCCCGTGGGCGAGCGCTCGACGACTCGGGCAAGCGT
AGGGGTGTCGTCCACGTTCAGCGGCGTTCCTGATGAGCCCGCTAATGACG
CGCAGGCCGTGGCAAGTTCTCTGCAGCGGACAATATGGGAGTCTGGCAAT
GGCGGCTTGTTGGGCACGCCTGTCACAGCCGCAAATGGGCGAACGGGTGA
TGACGGTTATTTCACTGCTACGCTTGTCCCGTTCTTCCCCGGGAGCCCGG
AAGTGAGGACAGGTTGTTATCATAACACCAATCAAACAGGCTACATTCGA
ATTCGCGATTCCAATCCTTTCAATACGCCCTTGCTGAAGAACAATCTTCT
CAGCGACCCGAGCGATGTCGGACGGCTGGTGCGCTGTCTGCAAAAGGTTG
TTCAGATTCACCAGAGTTTTCCAACTTTGTTTCGGATGAGCCTTACTGCG
CCCGCAAACGGTGTCATAGATGAACAGTACGTGAGGCAGAATGCAAACAC
GGGTGCTCACATCGTAGGAGGGTGCGCGGTGGGAGATGTTCTCACGGATG
AGTTGCAGGTCAAAGGCGTGGATAGATTAATGGTAGTTGACGCGTCTGCT
ATACCGCAGATGCCACGTTCAGCTGGACCAGCCGCCTCAGTTTATATGTT
GGCCGAGTTCATGGCCGATAAAATTATCGCCGAGCAGGGCGGCGTGTGA
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