Gvermi12813.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12813.t1
Unique NameGvermi12813.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1615209..1616118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7897.ENSLACP00000012597
Preferred nameMYBL1
PFAMsCmyb_C,LMSTEN,Myb_DNA-binding
Max annot lvl33208|Metazoa
KEGG koko:K09420,ko:K09421,ko:K21769
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
GOsGO:0000003,GO:0000086,GO:0000117,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000785,GO:0000790,GO:0000791,GO:0000910,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001076,GO:0001077,GO:0001134,GO:0001135,GO:0001228,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005700,GO:0005719,GO:0006139,GO:0006259,GO:0006277,GO:0006323,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007030,GO:0007049,GO:0007051,GO:0007088,GO:0007098,GO:0007099,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008361,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010256,GO:0010389,GO:0010467,GO:0010468,GO:0010528,GO:0010529,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010971,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030261,GO:0030703,GO:0030707,GO:0030855,GO:0031023,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031523,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032774,GO:0032989,GO:0032991,GO:0033043,GO:0034587,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044839,GO:0045787,GO:0045792,GO:0045893,GO:0045931,GO:0045935,GO:0045944,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051298,GO:0051301,GO:0051321,GO:0051704,GO:0051726,GO:0051783,GO:0060255,GO:0060429,GO:0061640,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070925,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090066,GO:0090068,GO:0090282,GO:0090304,GO:0097159,GO:0097659,GO:0098534,GO:0140013,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902680,GO:1902749,GO:1902751,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1990511,GO:1990837,GO:2000112,GO:2001141
Evalue3.03e-36
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,38EUR@33154|Opisthokonta,3BAYQ@33208|Metazoa,3CXMK@33213|Bilateria,482Q6@7711|Chordata,48WDS@7742|Vertebrata
DescriptionV-myb avian myeloblastosis viral oncogene homolog-like 1
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12813Gvermi12813Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1615209..1616118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12813.t1Gvermi12813.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1615209..1616118 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12813.t1.stop1Gvermi12813.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1615209..1615211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12813.t1.CDS1Gvermi12813.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1615209..1615260 -
Gvermi12813.t1.CDS2Gvermi12813.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1615541..1616118 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12813.t1.exon1Gvermi12813.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1615209..1615260 -
Gvermi12813.t1.exon2Gvermi12813.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1615541..1616118 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12813.t1.intron1Gvermi12813.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1615261..1615540 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12813.t1.start1Gvermi12813.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1616116..1616118 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12813.t1 ID=Gvermi12813.t1|Name=Gvermi12813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=210bp
MSPSPTNRRISVQDLLNSNTAPSQPSSQSSSVTDLEPDLPGSPSPNTSPA
LSAHPRLPATARGPWRRDEDQLLLHLVSKYGPRHWSAIARKIPRRTGKQA
RERWINQLNPTLKKKNWNIREDRIILEAHRRLGNRWSAIAHMLPGRTDNS
VKNRFNSTLKRAIKECAAFNSGPFSIDRIIGTVHAAPHPLPQPLRTASTA
HAVTICLST*
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spliced messenger RNA

>Gvermi12813.t1 ID=Gvermi12813.t1|Name=Gvermi12813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=630bp|location=Sequence derived from alignment at ScGOVlb_425:1615209..1616118- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCGAGCCCCACTAACCGCCGCATATCCGTCCAGGACCTCCTCAA
CTCAAACACCGCCCCCTCGCAACCCTCCTCCCAGTCATCCTCCGTCACCG
ACCTGGAGCCCGATCTTCCCGGCTCGCCCTCGCCCAACACATCGCCCGCC
CTGTCCGCTCATCCCCGCCTTCCCGCCACCGCGCGCGGCCCGTGGCGCCG
CGACGAGGACCAGCTGCTGCTGCACCTCGTTTCCAAGTACGGCCCCCGCC
ACTGGTCTGCCATCGCCCGTAAGATCCCCCGCCGCACCGGCAAGCAGGCG
CGCGAACGCTGGATTAACCAGCTCAACCCCACCCTCAAGAAGAAGAACTG
GAACATCCGTGAGGATCGCATCATCCTCGAGGCGCATCGCCGTCTGGGCA
ACCGCTGGAGCGCCATTGCTCACATGCTGCCCGGCCGCACCGACAACTCT
GTCAAGAACCGCTTCAACTCCACGCTGAAGCGCGCCATTAAGGAGTGCGC
CGCCTTCAACTCCGGCCCCTTCTCCATTGACCGCATCATCGGCACGGTGC
ACGCCGCCCCTCACCCCCTGCCGCAGCCCCTGCGCACCGCATCTACTGCT
CATGCTGTTACCATATGTCTGTCAACTTAA
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protein sequence of Gvermi12813.t1

>Gvermi12813.t1 ID=Gvermi12813.t1|Name=Gvermi12813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=210bp
MSPSPTNRRISVQDLLNSNTAPSQPSSQSSSVTDLEPDLPGSPSPNTSPA
LSAHPRLPATARGPWRRDEDQLLLHLVSKYGPRHWSAIARKIPRRTGKQA
RERWINQLNPTLKKKNWNIREDRIILEAHRRLGNRWSAIAHMLPGRTDNS
VKNRFNSTLKRAIKECAAFNSGPFSIDRIIGTVHAAPHPLPQPLRTASTA
HAVTICLST*
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mRNA from alignment at ScGOVlb_425:1615209..1616118-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12813.t1 ID=Gvermi12813.t1|Name=Gvermi12813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=910bp|location=Sequence derived from alignment at ScGOVlb_425:1615209..1616118- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCCGAGCCCCACTAACCGCCGCATATCCGTCCAGGACCTCCTCAA
CTCAAACACCGCCCCCTCGCAACCCTCCTCCCAGTCATCCTCCGTCACCG
ACCTGGAGCCCGATCTTCCCGGCTCGCCCTCGCCCAACACATCGCCCGCC
CTGTCCGCTCATCCCCGCCTTCCCGCCACCGCGCGCGGCCCGTGGCGCCG
CGACGAGGACCAGCTGCTGCTGCACCTCGTTTCCAAGTACGGCCCCCGCC
ACTGGTCTGCCATCGCCCGTAAGATCCCCCGCCGCACCGGCAAGCAGGCG
CGCGAACGCTGGATTAACCAGCTCAACCCCACCCTCAAGAAGAAGAACTG
GAACATCCGTGAGGATCGCATCATCCTCGAGGCGCATCGCCGTCTGGGCA
ACCGCTGGAGCGCCATTGCTCACATGCTGCCCGGCCGCACCGACAACTCT
GTCAAGAACCGCTTCAACTCCACGCTGAAGCGCGCCATTAAGGAGTGCGC
CGCCTTCAACTCCGGCCCCTTCTCCATTGACCGCATCATCGGCACGGTGC
ACGCCGCCCCTCACCCCCTGCCGCAGCCGTTGCAGCCCCCGCCCCCGCCC
GCTCACTCGTTTGCTGCCTTTGGCTCGCCCTGCTCGCTGTCGCCGTGCAC
CGCGGCGTGCGCCCTGTCATCGCTGCCTCTGCCGTCGCTGCCGCCGCCGC
CGCCGCCACCGCCACCACAACCGTTTCACAACGCTCCGCATCGCCAGCAC
TTTCCTTGCACATCTGCGCCGTGGCTAACTTCGCACACTGCCGCCGCATA
TAATTATGCGCCTTATAATCATTCGTCGCACGCGCGCTCGCTCCCACCCA
TATGATAGCCTGCGCACCGCATCTACTGCTCATGCTGTTACCATATGTCT
GTCAACTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1615209..1616118-

>Gvermi12813.t1 ID=Gvermi12813.t1|Name=Gvermi12813.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=630bp|location=Sequence derived from alignment at ScGOVlb_425:1615209..1616118- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCCGAGCCCCACTAACCGCCGCATATCCGTCCAGGACCTCCTCAA
CTCAAACACCGCCCCCTCGCAACCCTCCTCCCAGTCATCCTCCGTCACCG
ACCTGGAGCCCGATCTTCCCGGCTCGCCCTCGCCCAACACATCGCCCGCC
CTGTCCGCTCATCCCCGCCTTCCCGCCACCGCGCGCGGCCCGTGGCGCCG
CGACGAGGACCAGCTGCTGCTGCACCTCGTTTCCAAGTACGGCCCCCGCC
ACTGGTCTGCCATCGCCCGTAAGATCCCCCGCCGCACCGGCAAGCAGGCG
CGCGAACGCTGGATTAACCAGCTCAACCCCACCCTCAAGAAGAAGAACTG
GAACATCCGTGAGGATCGCATCATCCTCGAGGCGCATCGCCGTCTGGGCA
ACCGCTGGAGCGCCATTGCTCACATGCTGCCCGGCCGCACCGACAACTCT
GTCAAGAACCGCTTCAACTCCACGCTGAAGCGCGCCATTAAGGAGTGCGC
CGCCTTCAACTCCGGCCCCTTCTCCATTGACCGCATCATCGGCACGGTGC
ACGCCGCCCCTCACCCCCTGCCGCAGCCCCTGCGCACCGCATCTACTGCT
CATGCTGTTACCATATGTCTGTCAACTTAA
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