Gvermi12687.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12687.t1
Unique NameGvermi12687.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:887953..888833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12687Gvermi12687Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 886917..888833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t1Gvermi12687.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 887953..888833 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t1.stop1Gvermi12687.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 887953..887955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t1.CDS1Gvermi12687.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 887953..887977 -
Gvermi12687.t1.CDS2Gvermi12687.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 888073..888833 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t1.exon1Gvermi12687.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 887953..887977 -
Gvermi12687.t1.exon2Gvermi12687.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 888073..888833 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t1.intron1Gvermi12687.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 887978..888072 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t1.start1Gvermi12687.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 888831..888833 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12687.t1 ID=Gvermi12687.t1|Name=Gvermi12687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=262bp
MFAFLRLNPLRLLRREKLRPDPPPEEQLIELRTVVDDLQQSLSNSQADVH
NLRAQLQKRDEDAMKLRELVAQLRAQHKHVADALAASESARDSLDVQLAN
EKQEHGVTQQKLTADTAALEARLRTAEAEMAAQSAAAVKLNAALAERELT
IVARDNAAKEADHHAAQRLTALQHDKDHLEADVAKLRDHLAHVEIERDRL
DAEGAELREELHLAKTELEDWAREMKIMDDAPLDETPSSQEANGAVEMEG
NSSAPHRRAAG*
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spliced messenger RNA

>Gvermi12687.t1 ID=Gvermi12687.t1|Name=Gvermi12687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=786bp|location=Sequence derived from alignment at ScGOVlb_425:887953..888833- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCCTTTTTGAGGCTGAACCCGCTGCGGCTGTTGCGCCGGGAGAA
GCTGCGACCCGACCCCCCGCCGGAAGAGCAGCTGATTGAGCTTCGCACCG
TCGTCGACGACCTGCAGCAATCGCTATCCAACTCCCAAGCCGACGTGCAC
AACCTTCGCGCCCAGCTGCAGAAGCGCGACGAAGACGCCATGAAACTCCG
CGAGCTTGTAGCGCAGCTTCGCGCGCAACACAAGCACGTAGCCGATGCGC
TCGCCGCCAGTGAGAGTGCACGCGACTCCTTGGATGTGCAGCTTGCCAAC
GAGAAGCAAGAGCACGGCGTCACCCAGCAGAAACTGACCGCGGACACCGC
CGCATTGGAGGCGCGTTTGCGCACTGCCGAAGCGGAAATGGCTGCGCAGA
GCGCCGCGGCGGTCAAGTTGAACGCTGCGCTGGCTGAACGCGAACTCACC
ATTGTGGCACGCGATAACGCTGCAAAGGAGGCGGACCATCACGCCGCACA
ACGTTTAACCGCACTACAGCATGACAAAGACCACCTGGAGGCCGACGTGG
CCAAGCTTCGCGACCACCTGGCTCACGTAGAAATTGAGCGCGACCGGCTT
GACGCCGAAGGCGCCGAGCTCCGCGAGGAACTGCATCTAGCCAAGACCGA
GCTGGAGGATTGGGCGCGCGAGATGAAAATCATGGACGACGCTCCGCTCG
ACGAAACGCCCTCCTCGCAAGAAGCGAATGGTGCCGTGGAGATGGAAGGC
AATAGTTCTGCACCCCATCGCCGAGCTGCCGGCTGA
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protein sequence of Gvermi12687.t1

>Gvermi12687.t1 ID=Gvermi12687.t1|Name=Gvermi12687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=262bp
MFAFLRLNPLRLLRREKLRPDPPPEEQLIELRTVVDDLQQSLSNSQADVH
NLRAQLQKRDEDAMKLRELVAQLRAQHKHVADALAASESARDSLDVQLAN
EKQEHGVTQQKLTADTAALEARLRTAEAEMAAQSAAAVKLNAALAERELT
IVARDNAAKEADHHAAQRLTALQHDKDHLEADVAKLRDHLAHVEIERDRL
DAEGAELREELHLAKTELEDWAREMKIMDDAPLDETPSSQEANGAVEMEG
NSSAPHRRAAG*
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mRNA from alignment at ScGOVlb_425:887953..888833-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12687.t1 ID=Gvermi12687.t1|Name=Gvermi12687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=881bp|location=Sequence derived from alignment at ScGOVlb_425:887953..888833- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGCCTTTTTGAGGCTGAACCCGCTGCGGCTGTTGCGCCGGGAGAA
GCTGCGACCCGACCCCCCGCCGGAAGAGCAGCTGATTGAGCTTCGCACCG
TCGTCGACGACCTGCAGCAATCGCTATCCAACTCCCAAGCCGACGTGCAC
AACCTTCGCGCCCAGCTGCAGAAGCGCGACGAAGACGCCATGAAACTCCG
CGAGCTTGTAGCGCAGCTTCGCGCGCAACACAAGCACGTAGCCGATGCGC
TCGCCGCCAGTGAGAGTGCACGCGACTCCTTGGATGTGCAGCTTGCCAAC
GAGAAGCAAGAGCACGGCGTCACCCAGCAGAAACTGACCGCGGACACCGC
CGCATTGGAGGCGCGTTTGCGCACTGCCGAAGCGGAAATGGCTGCGCAGA
GCGCCGCGGCGGTCAAGTTGAACGCTGCGCTGGCTGAACGCGAACTCACC
ATTGTGGCACGCGATAACGCTGCAAAGGAGGCGGACCATCACGCCGCACA
ACGTTTAACCGCACTACAGCATGACAAAGACCACCTGGAGGCCGACGTGG
CCAAGCTTCGCGACCACCTGGCTCACGTAGAAATTGAGCGCGACCGGCTT
GACGCCGAAGGCGCCGAGCTCCGCGAGGAACTGCATCTAGCCAAGACCGA
GCTGGAGGATTGGGCGCGCGAGATGAAAATCATGGACGACGCTCCGCTCG
ACGAAACGCCCTCCTCGCAAGAAGCGAATGGTGCCGTGGAGATGGAAGGC
AATAGTTCTGCGTCCGCAGTCGCAGGCATCGATGCAGACCAAGATGAGCA
TATAGATGACGGTCATGTGTCTTTCAATCAACACGATAACGCACAGCTCC
CGTCAGACCCCATCGCCGAGCTGCCGGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:887953..888833-

>Gvermi12687.t1 ID=Gvermi12687.t1|Name=Gvermi12687.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=786bp|location=Sequence derived from alignment at ScGOVlb_425:887953..888833- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGCCTTTTTGAGGCTGAACCCGCTGCGGCTGTTGCGCCGGGAGAA
GCTGCGACCCGACCCCCCGCCGGAAGAGCAGCTGATTGAGCTTCGCACCG
TCGTCGACGACCTGCAGCAATCGCTATCCAACTCCCAAGCCGACGTGCAC
AACCTTCGCGCCCAGCTGCAGAAGCGCGACGAAGACGCCATGAAACTCCG
CGAGCTTGTAGCGCAGCTTCGCGCGCAACACAAGCACGTAGCCGATGCGC
TCGCCGCCAGTGAGAGTGCACGCGACTCCTTGGATGTGCAGCTTGCCAAC
GAGAAGCAAGAGCACGGCGTCACCCAGCAGAAACTGACCGCGGACACCGC
CGCATTGGAGGCGCGTTTGCGCACTGCCGAAGCGGAAATGGCTGCGCAGA
GCGCCGCGGCGGTCAAGTTGAACGCTGCGCTGGCTGAACGCGAACTCACC
ATTGTGGCACGCGATAACGCTGCAAAGGAGGCGGACCATCACGCCGCACA
ACGTTTAACCGCACTACAGCATGACAAAGACCACCTGGAGGCCGACGTGG
CCAAGCTTCGCGACCACCTGGCTCACGTAGAAATTGAGCGCGACCGGCTT
GACGCCGAAGGCGCCGAGCTCCGCGAGGAACTGCATCTAGCCAAGACCGA
GCTGGAGGATTGGGCGCGCGAGATGAAAATCATGGACGACGCTCCGCTCG
ACGAAACGCCCTCCTCGCAAGAAGCGAATGGTGCCGTGGAGATGGAAGGC
AATAGTTCTGCACCCCATCGCCGAGCTGCCGGCTGA
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