Gvermi12702.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12702.t1
Unique Name	Gvermi12702.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	706

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1068830..1070947 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709073.1
PFAMs	NTP_transf_2,PAP_RNA-bind,PAP_central
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09254,ko:K14376
KEGG Pathway	ko03015,ko04014,ko04624,ko05202,ko05203,map03015,map04014,map04624,map05202,map05203
GOs	GO:0000003,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008285,GO:0009653,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0022414,GO:0031123,GO:0031124,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045824,GO:0046483,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048441,GO:0048444,GO:0048446,GO:0048449,GO:0048451,GO:0048465,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0061458,GO:0065007,GO:0070013,GO:0070566,GO:0071704,GO:0080134,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1901360,GO:1905392,GO:1905393
Evalue	2.89e-156
EggNOG OGs	COG5186@1\|root,KOG2245@2759\|Eukaryota
EC	2.7.7.19
Description	polynucleotide adenylyltransferase activity
COG category	A
BRITE	ko00000,ko00001,ko01000,ko03000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12702	Gvermi12702	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1068830..1070947 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12702.t1.stop1	Gvermi12702.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1068830..1068832 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12702.t1.CDS1	Gvermi12702.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1068830..1070947 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12702.t1.exon1	Gvermi12702.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1068830..1070947 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12702.t1.start1	Gvermi12702.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1070945..1070947 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12702.t1	Gvermi12702.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1068830..1070947 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1068830..1070947-
coding sequence from alignment at ScGOVlb_425:1068830..1070947-

mRNA sequence

>Gvermi12702.t1 ID=Gvermi12702.t1|Name=Gvermi12702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=706bp
MTIQKRWGVTDPISTEPPTPRDHRLSNELEECLHKNNLYETQEGKELRER
VLLELSNIVKTWATKVSISQGMPEHDAKNCGVRICTFGSYRLGVDGPGAD
IDTLVITPRHILRKPHVFGEFDPNTGLTPASDIVLVEILRATPEATEIVA
VPRAFVPVIKFVYRGVEIDLLCAPLQITRIPDKFDILDDKILRNVDDETQ
RSINGVRVTDAILKLVPNIPNFRTVLRAIKLWAKRRQVYSNVLGFLGGVA
WAILTARVCQLYPYAAPSTLLTRFFLLYDKWNWNTSTQSAPVLLCAISSG
NPACGFKIWTPHGNQRHFMPIITPAYPSMNTTHNVSGSTLTIMKEEISRG
LRITQAIEESSDREDSDAGGLNAWQGLFKPSEFFGEYKRFLQVDVSADDQ
ESFKVWKGAVESKLRLLIRHLEESGSVRKVRPYPPGYQNNPKLRAGCGRT
FFIGLSLKPPSRQNVPNGTRRALDLTAPVSLWQHTVNGLPEKTNSMHLKV
SSLKAADLPEFVQGEIPKEYKEGRMVKKRKKRKVSTPTRPATSAPKSGES
SAGQKSVAASSNVPSADFAVSNGPPSKEQTGETQASRNDSENVKRMRVDE
AGTQKPGDQDEKNPEGEPEETTTVEKLKALAAAKVGTTRLVNDELVTDTA
VPGSAPQTQRTGERKTISVKLRKDPGTGTDGDAGEESSVRHDVHEMVEAN
GTADS*

spliced messenger RNA

>Gvermi12702.t1 ID=Gvermi12702.t1|Name=Gvermi12702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2118bp|location=Sequence derived from alignment at ScGOVlb_425:1068830..1070947- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCATCCAAAAGCGATGGGGAGTCACAGATCCGATTTCCACCGAGCC
GCCCACGCCGCGCGATCATCGCCTGAGCAACGAACTGGAAGAATGCTTGC
ACAAGAACAACCTCTACGAGACGCAAGAAGGTAAGGAGTTGAGGGAACGA
GTCTTGCTCGAGCTTTCCAATATTGTTAAGACTTGGGCAACCAAGGTTTC
CATTTCGCAGGGCATGCCGGAGCATGACGCAAAGAACTGTGGCGTTCGCA
TCTGCACTTTTGGATCGTACAGGCTCGGTGTCGACGGCCCCGGCGCCGAC
ATAGACACGCTTGTCATCACCCCACGCCACATTCTGCGCAAGCCACATGT
GTTTGGCGAGTTTGATCCCAACACAGGCCTCACGCCTGCCAGTGACATTG
TGCTCGTTGAAATATTACGAGCTACCCCGGAGGCCACAGAAATTGTAGCT
GTTCCAAGAGCGTTTGTTCCAGTCATAAAGTTCGTTTATCGTGGTGTTGA
AATTGATCTGCTCTGTGCCCCACTTCAAATCACACGAATCCCGGACAAAT
TTGACATCCTTGATGATAAGATTCTGCGCAACGTTGACGACGAGACGCAG
CGCAGTATCAACGGTGTGCGAGTAACTGACGCTATCCTTAAACTTGTCCC
CAACATACCAAACTTTCGAACTGTTCTTCGAGCCATCAAACTTTGGGCAA
AACGACGACAGGTGTACTCAAACGTTCTTGGCTTTTTGGGCGGCGTTGCA
TGGGCTATCCTGACCGCCCGTGTCTGCCAACTCTATCCTTATGCTGCACC
TTCCACACTTTTAACCCGGTTTTTCCTTTTGTACGATAAATGGAATTGGA
ACACTTCAACGCAGTCGGCCCCTGTACTTCTATGTGCGATTTCAAGCGGC
AATCCGGCGTGCGGCTTCAAGATATGGACCCCCCACGGCAATCAGAGACA
TTTTATGCCGATCATCACCCCGGCGTACCCAAGCATGAACACCACCCACA
ACGTCTCCGGATCCACTCTGACCATTATGAAGGAGGAAATTAGTCGAGGG
CTTCGAATCACTCAAGCGATTGAAGAAAGTTCAGACCGAGAAGATTCCGA
TGCGGGCGGGCTCAACGCCTGGCAGGGTTTGTTCAAGCCTTCGGAATTCT
TTGGCGAATACAAGCGCTTCCTTCAAGTCGATGTTTCTGCGGATGATCAG
GAGAGCTTCAAAGTCTGGAAGGGCGCGGTCGAGTCCAAGCTCAGGCTATT
GATTCGCCATCTCGAGGAATCAGGAAGCGTCCGGAAAGTAAGACCGTACC
CCCCTGGTTACCAGAACAACCCGAAGTTGCGAGCTGGGTGTGGAAGAACG
TTTTTCATCGGTTTAAGCCTCAAACCTCCTTCACGACAGAATGTGCCCAA
TGGGACGCGTCGCGCGCTGGACCTCACTGCGCCGGTCAGTTTATGGCAAC
ACACCGTCAATGGCCTCCCTGAGAAAACAAATTCCATGCACTTAAAAGTA
AGCAGTTTGAAGGCTGCAGACTTACCAGAGTTTGTTCAAGGTGAAATACC
AAAGGAGTACAAAGAAGGAAGGATGGTGAAGAAGAGGAAGAAAAGGAAGG
TGAGTACGCCTACAAGGCCTGCGACCTCTGCTCCTAAATCTGGGGAAAGC
TCTGCAGGGCAGAAATCAGTTGCGGCAAGCTCAAATGTTCCCTCTGCTGA
TTTCGCTGTATCGAATGGGCCGCCAAGCAAAGAACAGACGGGGGAGACAC
AGGCATCTCGAAACGATTCTGAAAACGTTAAGCGAATGCGTGTTGATGAG
GCCGGTACTCAGAAACCAGGGGACCAGGATGAGAAGAATCCAGAAGGAGA
ACCAGAGGAAACGACAACTGTCGAAAAACTAAAGGCTTTGGCGGCAGCAA
AGGTAGGAACAACAAGACTGGTCAACGACGAGTTAGTGACAGACACAGCT
GTCCCCGGTTCCGCTCCTCAAACTCAAAGAACAGGGGAGCGGAAGACAAT
AAGTGTGAAGCTAAGAAAGGATCCGGGAACGGGCACTGACGGAGATGCAG
GTGAGGAAAGCAGTGTGAGGCATGACGTTCACGAAATGGTGGAAGCAAAT
GGGACAGCCGATAGTTAA

protein sequence of Gvermi12702.t1

>Gvermi12702.t1 ID=Gvermi12702.t1|Name=Gvermi12702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=706bp
MTIQKRWGVTDPISTEPPTPRDHRLSNELEECLHKNNLYETQEGKELRER
VLLELSNIVKTWATKVSISQGMPEHDAKNCGVRICTFGSYRLGVDGPGAD
IDTLVITPRHILRKPHVFGEFDPNTGLTPASDIVLVEILRATPEATEIVA
VPRAFVPVIKFVYRGVEIDLLCAPLQITRIPDKFDILDDKILRNVDDETQ
RSINGVRVTDAILKLVPNIPNFRTVLRAIKLWAKRRQVYSNVLGFLGGVA
WAILTARVCQLYPYAAPSTLLTRFFLLYDKWNWNTSTQSAPVLLCAISSG
NPACGFKIWTPHGNQRHFMPIITPAYPSMNTTHNVSGSTLTIMKEEISRG
LRITQAIEESSDREDSDAGGLNAWQGLFKPSEFFGEYKRFLQVDVSADDQ
ESFKVWKGAVESKLRLLIRHLEESGSVRKVRPYPPGYQNNPKLRAGCGRT
FFIGLSLKPPSRQNVPNGTRRALDLTAPVSLWQHTVNGLPEKTNSMHLKV
SSLKAADLPEFVQGEIPKEYKEGRMVKKRKKRKVSTPTRPATSAPKSGES
SAGQKSVAASSNVPSADFAVSNGPPSKEQTGETQASRNDSENVKRMRVDE
AGTQKPGDQDEKNPEGEPEETTTVEKLKALAAAKVGTTRLVNDELVTDTA
VPGSAPQTQRTGERKTISVKLRKDPGTGTDGDAGEESSVRHDVHEMVEAN
GTADS*

mRNA from alignment at ScGOVlb_425:1068830..1070947-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12702.t1 ID=Gvermi12702.t1|Name=Gvermi12702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2118bp|location=Sequence derived from alignment at ScGOVlb_425:1068830..1070947- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCATCCAAAAGCGATGGGGAGTCACAGATCCGATTTCCACCGAGCC
GCCCACGCCGCGCGATCATCGCCTGAGCAACGAACTGGAAGAATGCTTGC
ACAAGAACAACCTCTACGAGACGCAAGAAGGTAAGGAGTTGAGGGAACGA
GTCTTGCTCGAGCTTTCCAATATTGTTAAGACTTGGGCAACCAAGGTTTC
CATTTCGCAGGGCATGCCGGAGCATGACGCAAAGAACTGTGGCGTTCGCA
TCTGCACTTTTGGATCGTACAGGCTCGGTGTCGACGGCCCCGGCGCCGAC
ATAGACACGCTTGTCATCACCCCACGCCACATTCTGCGCAAGCCACATGT
GTTTGGCGAGTTTGATCCCAACACAGGCCTCACGCCTGCCAGTGACATTG
TGCTCGTTGAAATATTACGAGCTACCCCGGAGGCCACAGAAATTGTAGCT
GTTCCAAGAGCGTTTGTTCCAGTCATAAAGTTCGTTTATCGTGGTGTTGA
AATTGATCTGCTCTGTGCCCCACTTCAAATCACACGAATCCCGGACAAAT
TTGACATCCTTGATGATAAGATTCTGCGCAACGTTGACGACGAGACGCAG
CGCAGTATCAACGGTGTGCGAGTAACTGACGCTATCCTTAAACTTGTCCC
CAACATACCAAACTTTCGAACTGTTCTTCGAGCCATCAAACTTTGGGCAA
AACGACGACAGGTGTACTCAAACGTTCTTGGCTTTTTGGGCGGCGTTGCA
TGGGCTATCCTGACCGCCCGTGTCTGCCAACTCTATCCTTATGCTGCACC
TTCCACACTTTTAACCCGGTTTTTCCTTTTGTACGATAAATGGAATTGGA
ACACTTCAACGCAGTCGGCCCCTGTACTTCTATGTGCGATTTCAAGCGGC
AATCCGGCGTGCGGCTTCAAGATATGGACCCCCCACGGCAATCAGAGACA
TTTTATGCCGATCATCACCCCGGCGTACCCAAGCATGAACACCACCCACA
ACGTCTCCGGATCCACTCTGACCATTATGAAGGAGGAAATTAGTCGAGGG
CTTCGAATCACTCAAGCGATTGAAGAAAGTTCAGACCGAGAAGATTCCGA
TGCGGGCGGGCTCAACGCCTGGCAGGGTTTGTTCAAGCCTTCGGAATTCT
TTGGCGAATACAAGCGCTTCCTTCAAGTCGATGTTTCTGCGGATGATCAG
GAGAGCTTCAAAGTCTGGAAGGGCGCGGTCGAGTCCAAGCTCAGGCTATT
GATTCGCCATCTCGAGGAATCAGGAAGCGTCCGGAAAGTAAGACCGTACC
CCCCTGGTTACCAGAACAACCCGAAGTTGCGAGCTGGGTGTGGAAGAACG
TTTTTCATCGGTTTAAGCCTCAAACCTCCTTCACGACAGAATGTGCCCAA
TGGGACGCGTCGCGCGCTGGACCTCACTGCGCCGGTCAGTTTATGGCAAC
ACACCGTCAATGGCCTCCCTGAGAAAACAAATTCCATGCACTTAAAAGTA
AGCAGTTTGAAGGCTGCAGACTTACCAGAGTTTGTTCAAGGTGAAATACC
AAAGGAGTACAAAGAAGGAAGGATGGTGAAGAAGAGGAAGAAAAGGAAGG
TGAGTACGCCTACAAGGCCTGCGACCTCTGCTCCTAAATCTGGGGAAAGC
TCTGCAGGGCAGAAATCAGTTGCGGCAAGCTCAAATGTTCCCTCTGCTGA
TTTCGCTGTATCGAATGGGCCGCCAAGCAAAGAACAGACGGGGGAGACAC
AGGCATCTCGAAACGATTCTGAAAACGTTAAGCGAATGCGTGTTGATGAG
GCCGGTACTCAGAAACCAGGGGACCAGGATGAGAAGAATCCAGAAGGAGA
ACCAGAGGAAACGACAACTGTCGAAAAACTAAAGGCTTTGGCGGCAGCAA
AGGTAGGAACAACAAGACTGGTCAACGACGAGTTAGTGACAGACACAGCT
GTCCCCGGTTCCGCTCCTCAAACTCAAAGAACAGGGGAGCGGAAGACAAT
AAGTGTGAAGCTAAGAAAGGATCCGGGAACGGGCACTGACGGAGATGCAG
GTGAGGAAAGCAGTGTGAGGCATGACGTTCACGAAATGGTGGAAGCAAAT
GGGACAGCCGATAGTTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1068830..1070947-

>Gvermi12702.t1 ID=Gvermi12702.t1|Name=Gvermi12702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2118bp|location=Sequence derived from alignment at ScGOVlb_425:1068830..1070947- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCATCCAAAAGCGATGGGGAGTCACAGATCCGATTTCCACCGAGCC
GCCCACGCCGCGCGATCATCGCCTGAGCAACGAACTGGAAGAATGCTTGC
ACAAGAACAACCTCTACGAGACGCAAGAAGGTAAGGAGTTGAGGGAACGA
GTCTTGCTCGAGCTTTCCAATATTGTTAAGACTTGGGCAACCAAGGTTTC
CATTTCGCAGGGCATGCCGGAGCATGACGCAAAGAACTGTGGCGTTCGCA
TCTGCACTTTTGGATCGTACAGGCTCGGTGTCGACGGCCCCGGCGCCGAC
ATAGACACGCTTGTCATCACCCCACGCCACATTCTGCGCAAGCCACATGT
GTTTGGCGAGTTTGATCCCAACACAGGCCTCACGCCTGCCAGTGACATTG
TGCTCGTTGAAATATTACGAGCTACCCCGGAGGCCACAGAAATTGTAGCT
GTTCCAAGAGCGTTTGTTCCAGTCATAAAGTTCGTTTATCGTGGTGTTGA
AATTGATCTGCTCTGTGCCCCACTTCAAATCACACGAATCCCGGACAAAT
TTGACATCCTTGATGATAAGATTCTGCGCAACGTTGACGACGAGACGCAG
CGCAGTATCAACGGTGTGCGAGTAACTGACGCTATCCTTAAACTTGTCCC
CAACATACCAAACTTTCGAACTGTTCTTCGAGCCATCAAACTTTGGGCAA
AACGACGACAGGTGTACTCAAACGTTCTTGGCTTTTTGGGCGGCGTTGCA
TGGGCTATCCTGACCGCCCGTGTCTGCCAACTCTATCCTTATGCTGCACC
TTCCACACTTTTAACCCGGTTTTTCCTTTTGTACGATAAATGGAATTGGA
ACACTTCAACGCAGTCGGCCCCTGTACTTCTATGTGCGATTTCAAGCGGC
AATCCGGCGTGCGGCTTCAAGATATGGACCCCCCACGGCAATCAGAGACA
TTTTATGCCGATCATCACCCCGGCGTACCCAAGCATGAACACCACCCACA
ACGTCTCCGGATCCACTCTGACCATTATGAAGGAGGAAATTAGTCGAGGG
CTTCGAATCACTCAAGCGATTGAAGAAAGTTCAGACCGAGAAGATTCCGA
TGCGGGCGGGCTCAACGCCTGGCAGGGTTTGTTCAAGCCTTCGGAATTCT
TTGGCGAATACAAGCGCTTCCTTCAAGTCGATGTTTCTGCGGATGATCAG
GAGAGCTTCAAAGTCTGGAAGGGCGCGGTCGAGTCCAAGCTCAGGCTATT
GATTCGCCATCTCGAGGAATCAGGAAGCGTCCGGAAAGTAAGACCGTACC
CCCCTGGTTACCAGAACAACCCGAAGTTGCGAGCTGGGTGTGGAAGAACG
TTTTTCATCGGTTTAAGCCTCAAACCTCCTTCACGACAGAATGTGCCCAA
TGGGACGCGTCGCGCGCTGGACCTCACTGCGCCGGTCAGTTTATGGCAAC
ACACCGTCAATGGCCTCCCTGAGAAAACAAATTCCATGCACTTAAAAGTA
AGCAGTTTGAAGGCTGCAGACTTACCAGAGTTTGTTCAAGGTGAAATACC
AAAGGAGTACAAAGAAGGAAGGATGGTGAAGAAGAGGAAGAAAAGGAAGG
TGAGTACGCCTACAAGGCCTGCGACCTCTGCTCCTAAATCTGGGGAAAGC
TCTGCAGGGCAGAAATCAGTTGCGGCAAGCTCAAATGTTCCCTCTGCTGA
TTTCGCTGTATCGAATGGGCCGCCAAGCAAAGAACAGACGGGGGAGACAC
AGGCATCTCGAAACGATTCTGAAAACGTTAAGCGAATGCGTGTTGATGAG
GCCGGTACTCAGAAACCAGGGGACCAGGATGAGAAGAATCCAGAAGGAGA
ACCAGAGGAAACGACAACTGTCGAAAAACTAAAGGCTTTGGCGGCAGCAA
AGGTAGGAACAACAAGACTGGTCAACGACGAGTTAGTGACAGACACAGCT
GTCCCCGGTTCCGCTCCTCAAACTCAAAGAACAGGGGAGCGGAAGACAAT
AAGTGTGAAGCTAAGAAAGGATCCGGGAACGGGCACTGACGGAGATGCAG
GTGAGGAAAGCAGTGTGAGGCATGACGTTCACGAAATGGTGGAAGCAAAT
GGGACAGCCGATAGTTAA