Gvermi12795.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12795.t1
Unique NameGvermi12795.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length657
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1537547..1539814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12795Gvermi12795Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1537547..1539814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12795.t1Gvermi12795.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1537547..1539814 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12795.t1.start1Gvermi12795.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1537547..1537549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12795.t1.CDS1Gvermi12795.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1537547..1537778 +
Gvermi12795.t1.CDS2Gvermi12795.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1538076..1539814 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12795.t1.exon1Gvermi12795.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1537547..1537778 +
Gvermi12795.t1.exon2Gvermi12795.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1538076..1539814 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12795.t1.intron1Gvermi12795.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1537779..1538075 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12795.t1.stop1Gvermi12795.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1539812..1539814 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12795.t1 ID=Gvermi12795.t1|Name=Gvermi12795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=657bp
MFPPRPAHPAFLPPPALVRSHAAAQPAAQPPSRAAFPTAARALDRAVAAA
WGAPVTLQPVQSIWANTGVWTADDPKRLVRQLENCLRRRKIDRARDILFE
NAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIM
ICAYGKSGRVAQAEKCMNRMRAQHVQPNAFSYSALIEAFGRVGNLQKAEA
ALRHMMNDGVQPNVVAYNALMKVYVKRGRKADAFRLLEEMESLGRKPDVI
TYGTLIDACAKTRDVDRAFQVFHRLQRNNIQPNRVCYASLIDACSKARQP
HRAFQVLASMKANKIHPDIFAYNALIDACGRVKLVERAFDVYQEILQSGL
RPDKVTFNALISACGRARDLSRAFEALESMTNTFNYTPDRHTYNSLIDAC
GKSERLDKAFDVFNRMVASGIKPCAVSYNALIDACGRTKNLELAYKLSNQ
MRSENIKPDVYTLNTLVAVCGRCGDIDRSFTVLSELREFGVRPDEVTYNT
LIDALGRQGELSRAWSVLEEMIAMGVRPTRVTFNAFACACAKTRDGQLAL
QLYGVMKSQRVDPDPVSYSALIDACCRSSMAMESIPIYDEMKDRRVDTWE
NVGVTLTASCFNSGSFRSAYQVFMTLTPKAQCRVEERIRSAICNLPVGSG
GVPVLA*
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spliced messenger RNA

>Gvermi12795.t1 ID=Gvermi12795.t1|Name=Gvermi12795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1971bp|location=Sequence derived from alignment at ScGOVlb_425:1537547..1539814+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCCGCCGCGCCCCGCCCACCCCGCCTTCCTGCCGCCGCCCGCCCT
CGTGCGCAGCCATGCCGCCGCGCAACCCGCCGCGCAGCCGCCGTCGCGCG
CCGCCTTTCCCACCGCCGCCCGCGCCCTAGACCGCGCCGTCGCCGCCGCC
TGGGGCGCCCCCGTCACCCTGCAGCCCGTCCAGTCCATCTGGGCGAACAC
CGGCGTCTGGACCGCAGACGACCCCAAGCGCCTTGTGCGCCAGCTGGAGA
ACTGTCTGCGACGCCGCAAGATTGACCGCGCCCGCGACATCCTCTTTGAG
AATGCCCAGCGCCGCGTCTTCCGCACGCGCCACTACAACTCCCTGTTGGA
CGCCCTCGTCAAGGCCAACCGCCTGCACGACGCCGAGATGCTCTTTGCCG
AGTTTGACCGCAACGGTCTCGTCAGAGACGTCGCCTCGTACTCCATCATG
ATTTGCGCCTACGGCAAGAGCGGCCGTGTGGCGCAGGCCGAAAAGTGCAT
GAACCGCATGCGCGCACAGCATGTGCAGCCCAATGCCTTCTCGTACTCCG
CCTTGATTGAGGCCTTTGGTCGTGTGGGCAACTTGCAGAAGGCTGAGGCT
GCCCTGCGCCACATGATGAACGACGGTGTGCAGCCAAATGTCGTCGCGTA
TAACGCCCTCATGAAGGTTTACGTCAAACGCGGCCGCAAGGCCGACGCCT
TCCGTCTCCTGGAAGAGATGGAGAGCCTCGGACGCAAGCCGGACGTCATC
ACCTACGGCACGCTCATCGACGCGTGCGCCAAGACTCGTGACGTTGACCG
CGCTTTTCAGGTGTTTCACCGCTTGCAGCGCAACAACATTCAGCCCAACC
GAGTGTGCTACGCCTCGCTCATAGACGCGTGCTCCAAGGCCAGGCAGCCG
CATCGCGCCTTTCAGGTGCTCGCCAGTATGAAGGCCAACAAGATTCATCC
GGACATTTTTGCCTACAATGCTTTGATCGATGCCTGTGGCAGGGTGAAGC
TTGTGGAACGCGCTTTTGACGTGTATCAGGAGATTTTACAGTCTGGTCTG
CGCCCGGACAAGGTTACGTTCAACGCCTTGATTTCCGCCTGTGGCCGAGC
GCGTGATTTATCAAGAGCGTTTGAGGCGCTGGAGTCTATGACCAATACGT
TCAACTACACGCCTGACCGTCATACGTACAACTCGTTGATTGATGCTTGT
GGAAAGTCGGAGCGACTGGACAAGGCATTTGATGTCTTCAATCGAATGGT
CGCTTCGGGAATCAAACCTTGCGCTGTATCGTACAACGCGCTCATTGATG
CATGTGGGCGCACCAAGAATCTGGAACTGGCATATAAGCTTTCCAACCAG
ATGCGCAGTGAAAATATTAAGCCGGATGTCTACACTTTAAACACTCTGGT
CGCTGTGTGCGGTCGCTGCGGTGACATTGATCGGTCGTTCACTGTGTTAT
CGGAACTGCGTGAGTTTGGAGTGCGACCTGATGAGGTGACGTACAACACG
CTTATAGACGCTCTTGGCAGACAAGGTGAGCTTTCTAGGGCGTGGTCTGT
GCTGGAAGAAATGATTGCCATGGGCGTTCGACCCACTCGCGTCACATTCA
ACGCTTTCGCGTGTGCATGTGCCAAGACAAGAGATGGGCAGCTTGCGTTA
CAGCTGTACGGGGTTATGAAGAGTCAGCGCGTGGACCCGGATCCGGTTTC
GTATTCGGCGCTCATTGACGCTTGCTGTCGTAGCTCTATGGCTATGGAGT
CGATTCCAATTTACGATGAGATGAAGGACCGAAGGGTTGACACATGGGAG
AATGTGGGCGTCACGCTTACTGCTTCGTGCTTTAATAGCGGCAGTTTTCG
AAGTGCCTACCAAGTTTTCATGACGCTTACGCCTAAGGCGCAATGCAGGG
TGGAGGAGCGAATTCGGTCAGCTATATGCAACCTTCCCGTGGGGTCAGGG
GGGGTGCCCGTGTTGGCTTAA
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protein sequence of Gvermi12795.t1

>Gvermi12795.t1 ID=Gvermi12795.t1|Name=Gvermi12795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=657bp
MFPPRPAHPAFLPPPALVRSHAAAQPAAQPPSRAAFPTAARALDRAVAAA
WGAPVTLQPVQSIWANTGVWTADDPKRLVRQLENCLRRRKIDRARDILFE
NAQRRVFRTRHYNSLLDALVKANRLHDAEMLFAEFDRNGLVRDVASYSIM
ICAYGKSGRVAQAEKCMNRMRAQHVQPNAFSYSALIEAFGRVGNLQKAEA
ALRHMMNDGVQPNVVAYNALMKVYVKRGRKADAFRLLEEMESLGRKPDVI
TYGTLIDACAKTRDVDRAFQVFHRLQRNNIQPNRVCYASLIDACSKARQP
HRAFQVLASMKANKIHPDIFAYNALIDACGRVKLVERAFDVYQEILQSGL
RPDKVTFNALISACGRARDLSRAFEALESMTNTFNYTPDRHTYNSLIDAC
GKSERLDKAFDVFNRMVASGIKPCAVSYNALIDACGRTKNLELAYKLSNQ
MRSENIKPDVYTLNTLVAVCGRCGDIDRSFTVLSELREFGVRPDEVTYNT
LIDALGRQGELSRAWSVLEEMIAMGVRPTRVTFNAFACACAKTRDGQLAL
QLYGVMKSQRVDPDPVSYSALIDACCRSSMAMESIPIYDEMKDRRVDTWE
NVGVTLTASCFNSGSFRSAYQVFMTLTPKAQCRVEERIRSAICNLPVGSG
GVPVLA*
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mRNA from alignment at ScGOVlb_425:1537547..1539814+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12795.t1 ID=Gvermi12795.t1|Name=Gvermi12795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2268bp|location=Sequence derived from alignment at ScGOVlb_425:1537547..1539814+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCCGCCGCGCCCCGCCCACCCCGCCTTCCTGCCGCCGCCCGCCCT
CGTGCGCAGCCATGCCGCCGCGCAACCCGCCGCGCAGCCGCCGTCGCGCG
CCGCCTTTCCCACCGCCGCCCGCGCCCTAGACCGCGCCGTCGCCGCCGCC
TGGGGCGCCCCCGTCACCCTGCAGCCCGTCCAGTCCATCTGGGCGAACAC
CGGCGTCTGGACCGCAGACGACCCCAAGCGCCGTCGCCGCGATGCTCGTA
CCGTTCCGCCCGCCGACTCCGTTTTGTGTCCCACCGTCGAGCActccacc
gcgcccccgccctgtcgctctccgccttccgcccccgtctccgccgcccc
tgctgcgtcggccgcgctttcgcctgtgtgccccgcacccgcgtccatgt
cctcgtttgctccgctgcagcgcccgcctgcgcctGGCGCCGCGCCCGTC
Tccgccgtcgccgccgccgccgccgccgccgccgcagctgctgccgccgc
GTCCCATGCGCCCAACTCCGATTCACAAGTTGTGCGCCAGCTGGAGAACT
GTCTGCGACGCCGCAAGATTGACCGCGCCCGCGACATCCTCTTTGAGAAT
GCCCAGCGCCGCGTCTTCCGCACGCGCCACTACAACTCCCTGTTGGACGC
CCTCGTCAAGGCCAACCGCCTGCACGACGCCGAGATGCTCTTTGCCGAGT
TTGACCGCAACGGTCTCGTCAGAGACGTCGCCTCGTACTCCATCATGATT
TGCGCCTACGGCAAGAGCGGCCGTGTGGCGCAGGCCGAAAAGTGCATGAA
CCGCATGCGCGCACAGCATGTGCAGCCCAATGCCTTCTCGTACTCCGCCT
TGATTGAGGCCTTTGGTCGTGTGGGCAACTTGCAGAAGGCTGAGGCTGCC
CTGCGCCACATGATGAACGACGGTGTGCAGCCAAATGTCGTCGCGTATAA
CGCCCTCATGAAGGTTTACGTCAAACGCGGCCGCAAGGCCGACGCCTTCC
GTCTCCTGGAAGAGATGGAGAGCCTCGGACGCAAGCCGGACGTCATCACC
TACGGCACGCTCATCGACGCGTGCGCCAAGACTCGTGACGTTGACCGCGC
TTTTCAGGTGTTTCACCGCTTGCAGCGCAACAACATTCAGCCCAACCGAG
TGTGCTACGCCTCGCTCATAGACGCGTGCTCCAAGGCCAGGCAGCCGCAT
CGCGCCTTTCAGGTGCTCGCCAGTATGAAGGCCAACAAGATTCATCCGGA
CATTTTTGCCTACAATGCTTTGATCGATGCCTGTGGCAGGGTGAAGCTTG
TGGAACGCGCTTTTGACGTGTATCAGGAGATTTTACAGTCTGGTCTGCGC
CCGGACAAGGTTACGTTCAACGCCTTGATTTCCGCCTGTGGCCGAGCGCG
TGATTTATCAAGAGCGTTTGAGGCGCTGGAGTCTATGACCAATACGTTCA
ACTACACGCCTGACCGTCATACGTACAACTCGTTGATTGATGCTTGTGGA
AAGTCGGAGCGACTGGACAAGGCATTTGATGTCTTCAATCGAATGGTCGC
TTCGGGAATCAAACCTTGCGCTGTATCGTACAACGCGCTCATTGATGCAT
GTGGGCGCACCAAGAATCTGGAACTGGCATATAAGCTTTCCAACCAGATG
CGCAGTGAAAATATTAAGCCGGATGTCTACACTTTAAACACTCTGGTCGC
TGTGTGCGGTCGCTGCGGTGACATTGATCGGTCGTTCACTGTGTTATCGG
AACTGCGTGAGTTTGGAGTGCGACCTGATGAGGTGACGTACAACACGCTT
ATAGACGCTCTTGGCAGACAAGGTGAGCTTTCTAGGGCGTGGTCTGTGCT
GGAAGAAATGATTGCCATGGGCGTTCGACCCACTCGCGTCACATTCAACG
CTTTCGCGTGTGCATGTGCCAAGACAAGAGATGGGCAGCTTGCGTTACAG
CTGTACGGGGTTATGAAGAGTCAGCGCGTGGACCCGGATCCGGTTTCGTA
TTCGGCGCTCATTGACGCTTGCTGTCGTAGCTCTATGGCTATGGAGTCGA
TTCCAATTTACGATGAGATGAAGGACCGAAGGGTTGACACATGGGAGAAT
GTGGGCGTCACGCTTACTGCTTCGTGCTTTAATAGCGGCAGTTTTCGAAG
TGCCTACCAAGTTTTCATGACGCTTACGCCTAAGGCGCAATGCAGGGTGG
AGGAGCGAATTCGGTCAGCTATATGCAACCTTCCCGTGGGGTCAGGGGGG
GTGCCCGTGTTGGCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1537547..1539814+

>Gvermi12795.t1 ID=Gvermi12795.t1|Name=Gvermi12795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1971bp|location=Sequence derived from alignment at ScGOVlb_425:1537547..1539814+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCCGCCGCGCCCCGCCCACCCCGCCTTCCTGCCGCCGCCCGCCCT
CGTGCGCAGCCATGCCGCCGCGCAACCCGCCGCGCAGCCGCCGTCGCGCG
CCGCCTTTCCCACCGCCGCCCGCGCCCTAGACCGCGCCGTCGCCGCCGCC
TGGGGCGCCCCCGTCACCCTGCAGCCCGTCCAGTCCATCTGGGCGAACAC
CGGCGTCTGGACCGCAGACGACCCCAAGCGCCTTGTGCGCCAGCTGGAGA
ACTGTCTGCGACGCCGCAAGATTGACCGCGCCCGCGACATCCTCTTTGAG
AATGCCCAGCGCCGCGTCTTCCGCACGCGCCACTACAACTCCCTGTTGGA
CGCCCTCGTCAAGGCCAACCGCCTGCACGACGCCGAGATGCTCTTTGCCG
AGTTTGACCGCAACGGTCTCGTCAGAGACGTCGCCTCGTACTCCATCATG
ATTTGCGCCTACGGCAAGAGCGGCCGTGTGGCGCAGGCCGAAAAGTGCAT
GAACCGCATGCGCGCACAGCATGTGCAGCCCAATGCCTTCTCGTACTCCG
CCTTGATTGAGGCCTTTGGTCGTGTGGGCAACTTGCAGAAGGCTGAGGCT
GCCCTGCGCCACATGATGAACGACGGTGTGCAGCCAAATGTCGTCGCGTA
TAACGCCCTCATGAAGGTTTACGTCAAACGCGGCCGCAAGGCCGACGCCT
TCCGTCTCCTGGAAGAGATGGAGAGCCTCGGACGCAAGCCGGACGTCATC
ACCTACGGCACGCTCATCGACGCGTGCGCCAAGACTCGTGACGTTGACCG
CGCTTTTCAGGTGTTTCACCGCTTGCAGCGCAACAACATTCAGCCCAACC
GAGTGTGCTACGCCTCGCTCATAGACGCGTGCTCCAAGGCCAGGCAGCCG
CATCGCGCCTTTCAGGTGCTCGCCAGTATGAAGGCCAACAAGATTCATCC
GGACATTTTTGCCTACAATGCTTTGATCGATGCCTGTGGCAGGGTGAAGC
TTGTGGAACGCGCTTTTGACGTGTATCAGGAGATTTTACAGTCTGGTCTG
CGCCCGGACAAGGTTACGTTCAACGCCTTGATTTCCGCCTGTGGCCGAGC
GCGTGATTTATCAAGAGCGTTTGAGGCGCTGGAGTCTATGACCAATACGT
TCAACTACACGCCTGACCGTCATACGTACAACTCGTTGATTGATGCTTGT
GGAAAGTCGGAGCGACTGGACAAGGCATTTGATGTCTTCAATCGAATGGT
CGCTTCGGGAATCAAACCTTGCGCTGTATCGTACAACGCGCTCATTGATG
CATGTGGGCGCACCAAGAATCTGGAACTGGCATATAAGCTTTCCAACCAG
ATGCGCAGTGAAAATATTAAGCCGGATGTCTACACTTTAAACACTCTGGT
CGCTGTGTGCGGTCGCTGCGGTGACATTGATCGGTCGTTCACTGTGTTAT
CGGAACTGCGTGAGTTTGGAGTGCGACCTGATGAGGTGACGTACAACACG
CTTATAGACGCTCTTGGCAGACAAGGTGAGCTTTCTAGGGCGTGGTCTGT
GCTGGAAGAAATGATTGCCATGGGCGTTCGACCCACTCGCGTCACATTCA
ACGCTTTCGCGTGTGCATGTGCCAAGACAAGAGATGGGCAGCTTGCGTTA
CAGCTGTACGGGGTTATGAAGAGTCAGCGCGTGGACCCGGATCCGGTTTC
GTATTCGGCGCTCATTGACGCTTGCTGTCGTAGCTCTATGGCTATGGAGT
CGATTCCAATTTACGATGAGATGAAGGACCGAAGGGTTGACACATGGGAG
AATGTGGGCGTCACGCTTACTGCTTCGTGCTTTAATAGCGGCAGTTTTCG
AAGTGCCTACCAAGTTTTCATGACGCTTACGCCTAAGGCGCAATGCAGGG
TGGAGGAGCGAATTCGGTCAGCTATATGCAACCTTCCCGTGGGGTCAGGG
GGGGTGCCCGTGTTGGCTTAA
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