Gvermi12755.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12755.t1
Unique Name	Gvermi12755.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	665

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1385508..1387502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4096.XP_009784009.1
PFAMs	HSP70
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03283
KEGG TC	1.A.33.1
KEGG Pathway	ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG Module	M00353,M00355
Evalue	0.0
EggNOG OGs	COG0443@1\|root,KOG0101@2759\|Eukaryota,37K68@33090\|Viridiplantae,3GAQN@35493\|Streptophyta,44SDY@71274\|asterids
Description	Heat shock cognate 70 kDa
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12755	Gvermi12755	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1385508..1387502 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12755.t1.start1	Gvermi12755.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1385508..1385510 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12755.t1.CDS1	Gvermi12755.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1385508..1387502 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12755.t1.exon1	Gvermi12755.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1385508..1387502 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12755.t1.stop1	Gvermi12755.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1387500..1387502 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12755.t1	Gvermi12755.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1385508..1387502 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1385508..1387502+
coding sequence from alignment at ScGOVlb_425:1385508..1387502+

mRNA sequence

>Gvermi12755.t1 ID=Gvermi12755.t1|Name=Gvermi12755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=665bp
MSSAVGGPSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDN
ERLIGDAAKNQVAINPANTVFDAKRLIGRRFSDSSVQSDRKHFSFTVIQK
DGDKPYIQVMYKGEQKTFSPEEVSAMVLTKMKDVAESYLGKPIKSAVVTV
PAYFNDSQRLATKDAGTIAGINVSRIINEPTAAAIAYGLDRKASGHTARE
RNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRMVNHFM
NEFKRKYKKDISGNARSVRRLRTQCERAKRQLSAATQATIEIDSLYEGTD
FYSSITRAKFEELCMDLFRGTLEPVEKVLRDSKIPKADVDDIVLVGGSTR
IPKVQSLLVDFFNGKELCKNINPDEAVAHGAAVQAAILAGDTSEKTQDLL
LLDVTPLSLGIETAGAVMTVLIKRNTTIPTKKQQIFSTYADNQPGVLIQV
YEGERTRTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAED
KSTGKKNKITITNDKGRLSKEQIEKMVQDAEKYKAEDDAAKSKIEARNSL
ENYCYTLRNTLSEDKVKDKISEDDKKAIEDKVSEVLKWMEENENAEKEEY
DEKQKSIEAVATPIITKMYQSGDGAGAMPGGMPGGMPGGMPGGMPGGAAG
AGAGGEDVEISEVD*

spliced messenger RNA

>Gvermi12755.t1 ID=Gvermi12755.t1|Name=Gvermi12755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1995bp|location=Sequence derived from alignment at ScGOVlb_425:1385508..1387502+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAGCGCTGTTGGTGGACCGTCCATCGGGATTGACCTTGGCACAAC
ATACTCGTGTGTCGGCGTGTGGCAGAATGACCGGGTTGAGATCATTGCCA
ACGATCAGGGTAACCGCACCACCCCATCATATGTTGCCTTCACAGACAAT
GAGCGCCTGATTGGAGATGCCGCAAAAAACCAGGTCGCCATTAATCCTGC
CAACACCGTGTTCGATGCCAAACGACTTATTGGGCGTCGCTTCTCTGACT
CCTCAGTTCAATCCGATCGCAAGCACTTTTCTTTCACAGTCATTCAAAAG
GATGGAGACAAGCCATACATTCAGGTCATGTACAAGGGTGAGCAGAAAAC
TTTCTCGCCCGAAGAAGTTTCCGCCATGGTTCTTACTAAGATGAAGGATG
TAGCTGAATCTTATCTGGGAAAGCCTATCAAATCCGCTGTCGTCACCGTC
CCCGCTTACTTCAACGATTCTCAGCGATTGGCTACTAAGGACGCCGGTAC
CATTGCCGGAATCAATGTGTCTCGTATCATCAACGAGCCGACAGCCGCCG
CCATTGCCTATGGTCTGGATCGTAAAGCCAGCGGACACACTGCTCGCGAA
CGCAATGTCTTAATCTTTGATCTTGGCGGTGGTACTTTTGATGTCTCCTT
GCTCACCATTGAAGATGGTATTTTCGAAGTGAAGGCCACAGCTGGCGACA
CTCATCTTGGCGGTGAAGATTTCGATAACCGTATGGTCAATCACTTCATG
AATGAATTCAAGCGCAAGTACAAGAAGGATATCTCCGGAAATGCTAGATC
TGTGCGTCGCCTTCGCACCCAGTGCGAACGTGCCAAGCGTCAACTTTCTG
CTGCCACCCAAGCCACTATCGAGATTGATTCTCTCTACGAAGGTACAGAC
TTCTATTCTTCAATTACCCGCGCCAAATTCGAAGAGCTTTGCATGGATTT
ATTCAGAGGTACTCTGGAGCCGGTTGAGAAGGTGTTGCGTGATTCTAAAA
TCCCCAAGGCAGATGTCGATGATATTGTGCTGGTCGGTGGTTCCACCCGT
ATTCCGAAGGTGCAAAGTTTACTCGTCGACTTCTTCAATGGCAAGGAACT
TTGCAAGAACATTAACCCGGATGAAGCTGTTGCTCACGGTGCAGCCGTTC
AAGCCGCGATTCTCGCCGGTGATACATCAGAGAAGACACAAGATCTTCTT
CTCCTGGATGTCACTCCATTGTCTCTTGGTATTGAAACTGCGGGTGCTGT
CATGACTGTGCTCATTAAGCGAAATACCACCATCCCCACCAAAAAGCAAC
AAATTTTCTCTACGTATGCCGATAACCAGCCCGGTGTGCTCATTCAAGTG
TACGAAGGTGAACGTACCCGTACCAAGGACAACAACCTTCTCGGAAAGTT
CGAGCTTTCTGGCATCCCCCCTGCTCCTCGAGGTGTTCCTCAAATTGAAG
TCACCTTCGATATTGACGCTAATGGTATTTTGAATGTCAGTGCAGAAGAC
AAGAGCACTGGTAAGAAGAATAAAATCACCATCACGAACGACAAAGGACG
TCTCAGCAAGGAACAAATTGAGAAAATGGTCCAGGATGCCGAGAAGTACA
AGGCAGAAGATGATGCTGCAAAATCCAAGATTGAAGCACGCAACTCTCTT
GAAAACTACTGCTACACCCTTCGCAATACCTTGAGCGAAGACAAGGTTAA
AGATAAAATCAGTGAAGATGATAAGAAGGCTATCGAAGATAAGGTTTCCG
AGGTGTTGAAGTGGATGGAAGAAAATGAGAACGCTGAGAAGGAAGAATAC
GATGAGAAGCAAAAATCAATTGAAGCTGTAGCTACACCCATCATCACTAA
AATGTATCAGAGTGGTGATGGTGCAGGTGCCATGCCTGGTGGTATGCCGG
GTGGCATGCCGGGTGGCATGCCGGGTGGTATGCCTGGAGGTGCTGCGGGT
GCTGGAGCGGGTGGCGAGGATGTGGAAATCTCCGAAGTTGACTAA

protein sequence of Gvermi12755.t1

>Gvermi12755.t1 ID=Gvermi12755.t1|Name=Gvermi12755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=665bp
MSSAVGGPSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDN
ERLIGDAAKNQVAINPANTVFDAKRLIGRRFSDSSVQSDRKHFSFTVIQK
DGDKPYIQVMYKGEQKTFSPEEVSAMVLTKMKDVAESYLGKPIKSAVVTV
PAYFNDSQRLATKDAGTIAGINVSRIINEPTAAAIAYGLDRKASGHTARE
RNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRMVNHFM
NEFKRKYKKDISGNARSVRRLRTQCERAKRQLSAATQATIEIDSLYEGTD
FYSSITRAKFEELCMDLFRGTLEPVEKVLRDSKIPKADVDDIVLVGGSTR
IPKVQSLLVDFFNGKELCKNINPDEAVAHGAAVQAAILAGDTSEKTQDLL
LLDVTPLSLGIETAGAVMTVLIKRNTTIPTKKQQIFSTYADNQPGVLIQV
YEGERTRTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAED
KSTGKKNKITITNDKGRLSKEQIEKMVQDAEKYKAEDDAAKSKIEARNSL
ENYCYTLRNTLSEDKVKDKISEDDKKAIEDKVSEVLKWMEENENAEKEEY
DEKQKSIEAVATPIITKMYQSGDGAGAMPGGMPGGMPGGMPGGMPGGAAG
AGAGGEDVEISEVD*

mRNA from alignment at ScGOVlb_425:1385508..1387502+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12755.t1 ID=Gvermi12755.t1|Name=Gvermi12755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1995bp|location=Sequence derived from alignment at ScGOVlb_425:1385508..1387502+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTAGCGCTGTTGGTGGACCGTCCATCGGGATTGACCTTGGCACAAC
ATACTCGTGTGTCGGCGTGTGGCAGAATGACCGGGTTGAGATCATTGCCA
ACGATCAGGGTAACCGCACCACCCCATCATATGTTGCCTTCACAGACAAT
GAGCGCCTGATTGGAGATGCCGCAAAAAACCAGGTCGCCATTAATCCTGC
CAACACCGTGTTCGATGCCAAACGACTTATTGGGCGTCGCTTCTCTGACT
CCTCAGTTCAATCCGATCGCAAGCACTTTTCTTTCACAGTCATTCAAAAG
GATGGAGACAAGCCATACATTCAGGTCATGTACAAGGGTGAGCAGAAAAC
TTTCTCGCCCGAAGAAGTTTCCGCCATGGTTCTTACTAAGATGAAGGATG
TAGCTGAATCTTATCTGGGAAAGCCTATCAAATCCGCTGTCGTCACCGTC
CCCGCTTACTTCAACGATTCTCAGCGATTGGCTACTAAGGACGCCGGTAC
CATTGCCGGAATCAATGTGTCTCGTATCATCAACGAGCCGACAGCCGCCG
CCATTGCCTATGGTCTGGATCGTAAAGCCAGCGGACACACTGCTCGCGAA
CGCAATGTCTTAATCTTTGATCTTGGCGGTGGTACTTTTGATGTCTCCTT
GCTCACCATTGAAGATGGTATTTTCGAAGTGAAGGCCACAGCTGGCGACA
CTCATCTTGGCGGTGAAGATTTCGATAACCGTATGGTCAATCACTTCATG
AATGAATTCAAGCGCAAGTACAAGAAGGATATCTCCGGAAATGCTAGATC
TGTGCGTCGCCTTCGCACCCAGTGCGAACGTGCCAAGCGTCAACTTTCTG
CTGCCACCCAAGCCACTATCGAGATTGATTCTCTCTACGAAGGTACAGAC
TTCTATTCTTCAATTACCCGCGCCAAATTCGAAGAGCTTTGCATGGATTT
ATTCAGAGGTACTCTGGAGCCGGTTGAGAAGGTGTTGCGTGATTCTAAAA
TCCCCAAGGCAGATGTCGATGATATTGTGCTGGTCGGTGGTTCCACCCGT
ATTCCGAAGGTGCAAAGTTTACTCGTCGACTTCTTCAATGGCAAGGAACT
TTGCAAGAACATTAACCCGGATGAAGCTGTTGCTCACGGTGCAGCCGTTC
AAGCCGCGATTCTCGCCGGTGATACATCAGAGAAGACACAAGATCTTCTT
CTCCTGGATGTCACTCCATTGTCTCTTGGTATTGAAACTGCGGGTGCTGT
CATGACTGTGCTCATTAAGCGAAATACCACCATCCCCACCAAAAAGCAAC
AAATTTTCTCTACGTATGCCGATAACCAGCCCGGTGTGCTCATTCAAGTG
TACGAAGGTGAACGTACCCGTACCAAGGACAACAACCTTCTCGGAAAGTT
CGAGCTTTCTGGCATCCCCCCTGCTCCTCGAGGTGTTCCTCAAATTGAAG
TCACCTTCGATATTGACGCTAATGGTATTTTGAATGTCAGTGCAGAAGAC
AAGAGCACTGGTAAGAAGAATAAAATCACCATCACGAACGACAAAGGACG
TCTCAGCAAGGAACAAATTGAGAAAATGGTCCAGGATGCCGAGAAGTACA
AGGCAGAAGATGATGCTGCAAAATCCAAGATTGAAGCACGCAACTCTCTT
GAAAACTACTGCTACACCCTTCGCAATACCTTGAGCGAAGACAAGGTTAA
AGATAAAATCAGTGAAGATGATAAGAAGGCTATCGAAGATAAGGTTTCCG
AGGTGTTGAAGTGGATGGAAGAAAATGAGAACGCTGAGAAGGAAGAATAC
GATGAGAAGCAAAAATCAATTGAAGCTGTAGCTACACCCATCATCACTAA
AATGTATCAGAGTGGTGATGGTGCAGGTGCCATGCCTGGTGGTATGCCGG
GTGGCATGCCGGGTGGCATGCCGGGTGGTATGCCTGGAGGTGCTGCGGGT
GCTGGAGCGGGTGGCGAGGATGTGGAAATCTCCGAAGTTGACTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1385508..1387502+

>Gvermi12755.t1 ID=Gvermi12755.t1|Name=Gvermi12755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1995bp|location=Sequence derived from alignment at ScGOVlb_425:1385508..1387502+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTAGCGCTGTTGGTGGACCGTCCATCGGGATTGACCTTGGCACAAC
ATACTCGTGTGTCGGCGTGTGGCAGAATGACCGGGTTGAGATCATTGCCA
ACGATCAGGGTAACCGCACCACCCCATCATATGTTGCCTTCACAGACAAT
GAGCGCCTGATTGGAGATGCCGCAAAAAACCAGGTCGCCATTAATCCTGC
CAACACCGTGTTCGATGCCAAACGACTTATTGGGCGTCGCTTCTCTGACT
CCTCAGTTCAATCCGATCGCAAGCACTTTTCTTTCACAGTCATTCAAAAG
GATGGAGACAAGCCATACATTCAGGTCATGTACAAGGGTGAGCAGAAAAC
TTTCTCGCCCGAAGAAGTTTCCGCCATGGTTCTTACTAAGATGAAGGATG
TAGCTGAATCTTATCTGGGAAAGCCTATCAAATCCGCTGTCGTCACCGTC
CCCGCTTACTTCAACGATTCTCAGCGATTGGCTACTAAGGACGCCGGTAC
CATTGCCGGAATCAATGTGTCTCGTATCATCAACGAGCCGACAGCCGCCG
CCATTGCCTATGGTCTGGATCGTAAAGCCAGCGGACACACTGCTCGCGAA
CGCAATGTCTTAATCTTTGATCTTGGCGGTGGTACTTTTGATGTCTCCTT
GCTCACCATTGAAGATGGTATTTTCGAAGTGAAGGCCACAGCTGGCGACA
CTCATCTTGGCGGTGAAGATTTCGATAACCGTATGGTCAATCACTTCATG
AATGAATTCAAGCGCAAGTACAAGAAGGATATCTCCGGAAATGCTAGATC
TGTGCGTCGCCTTCGCACCCAGTGCGAACGTGCCAAGCGTCAACTTTCTG
CTGCCACCCAAGCCACTATCGAGATTGATTCTCTCTACGAAGGTACAGAC
TTCTATTCTTCAATTACCCGCGCCAAATTCGAAGAGCTTTGCATGGATTT
ATTCAGAGGTACTCTGGAGCCGGTTGAGAAGGTGTTGCGTGATTCTAAAA
TCCCCAAGGCAGATGTCGATGATATTGTGCTGGTCGGTGGTTCCACCCGT
ATTCCGAAGGTGCAAAGTTTACTCGTCGACTTCTTCAATGGCAAGGAACT
TTGCAAGAACATTAACCCGGATGAAGCTGTTGCTCACGGTGCAGCCGTTC
AAGCCGCGATTCTCGCCGGTGATACATCAGAGAAGACACAAGATCTTCTT
CTCCTGGATGTCACTCCATTGTCTCTTGGTATTGAAACTGCGGGTGCTGT
CATGACTGTGCTCATTAAGCGAAATACCACCATCCCCACCAAAAAGCAAC
AAATTTTCTCTACGTATGCCGATAACCAGCCCGGTGTGCTCATTCAAGTG
TACGAAGGTGAACGTACCCGTACCAAGGACAACAACCTTCTCGGAAAGTT
CGAGCTTTCTGGCATCCCCCCTGCTCCTCGAGGTGTTCCTCAAATTGAAG
TCACCTTCGATATTGACGCTAATGGTATTTTGAATGTCAGTGCAGAAGAC
AAGAGCACTGGTAAGAAGAATAAAATCACCATCACGAACGACAAAGGACG
TCTCAGCAAGGAACAAATTGAGAAAATGGTCCAGGATGCCGAGAAGTACA
AGGCAGAAGATGATGCTGCAAAATCCAAGATTGAAGCACGCAACTCTCTT
GAAAACTACTGCTACACCCTTCGCAATACCTTGAGCGAAGACAAGGTTAA
AGATAAAATCAGTGAAGATGATAAGAAGGCTATCGAAGATAAGGTTTCCG
AGGTGTTGAAGTGGATGGAAGAAAATGAGAACGCTGAGAAGGAAGAATAC
GATGAGAAGCAAAAATCAATTGAAGCTGTAGCTACACCCATCATCACTAA
AATGTATCAGAGTGGTGATGGTGCAGGTGCCATGCCTGGTGGTATGCCGG
GTGGCATGCCGGGTGGCATGCCGGGTGGTATGCCTGGAGGTGCTGCGGGT
GCTGGAGCGGGTGGCGAGGATGTGGAAATCTCCGAAGTTGACTAA