Gvermi12777.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12777.t1
Unique NameGvermi12777.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1497522..1499069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12777Gvermi12777Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1497522..1499069 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12777.t1.stop1Gvermi12777.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1497522..1497524 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12777.t1.CDS1Gvermi12777.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1497522..1499069 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12777.t1.exon1Gvermi12777.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1497522..1499069 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12777.t1.start1Gvermi12777.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1499067..1499069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12777.t1Gvermi12777.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1497522..1499069 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12777.t1 ID=Gvermi12777.t1|Name=Gvermi12777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=516bp
MANPIVSDLPFTERIEMREKALAWISRDTGLQEFLIPDELTSDWSAEQKK
LWTTTVIDRFMSAKHQAGREARARVLARENASWLRRACVRLQQDLSDHRD
LTRMAVLMETLWNEVSASFSDSKWAECSIMFDSALIALRVAYVWLYDKLE
NDDADLHSRKEVFETVVKSFFNAHAPTDDKNDKHSSNFRDLQRVWRVEFE
NYGKSDDFDSKLKRLEKSQNLLKVGIAVRKFLDTVNVDASWMWDMQKLEE
DLKAGNVKRRKTPKNIEKPAPEPPEPESSGSYEPRAADSDFDIDTAEKVA
GAQNDDDEEEGSESDELMHGSMSQSKENGTAVRRSMRVAKGKVGRYTLGP
GAKRGQKRRAAARRAALHFSESPTPSLSDDTPIIQRARAMKKAHARKHGN
RDKHWNDDVAKIGHVMKRGTGPVSRPGAPRTGISRGRVLKDVQRRTTRSK
HNVTKPIEDEERPNDEFRYPGNDFDIGTDDIHGDLGDATTGGSIPGAPVT
FPDRKSRQIALLDSQ*
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spliced messenger RNA

>Gvermi12777.t1 ID=Gvermi12777.t1|Name=Gvermi12777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at ScGOVlb_425:1497522..1499069- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAATCCAATTGTTTCTGACTTGCCGTTTACCGAGCGTATAGAGAT
GCGAGAGAAGGCGCTGGCATGGATTTCTCGTGATACAGGTCTTCAGGAAT
TTCTCATCCCCGACGAATTGACATCAGACTGGAGTGCTGAACAGAAAAAA
TTATGGACAACGACCGTAATCGATCGATTCATGAGCGCAAAGCATCAGGC
CGGCCGTGAAGCGCGCGCCCGCGTCTTAGCACGTGAGAATGCAAGCTGGC
TGCGACGAGCGTGCGTCCGTTTGCAGCAGGACCTGTCGGACCACCGTGAT
CTTACCCGCATGGCCGTCCTAATGGAGACCTTGTGGAACGAAGTGAGCGC
GTCGTTCAGTGACTCCAAGTGGGCGGAGTGTTCCATCATGTTCGATTCGG
CCCTCATAGCTTTACGAGTTGCGTACGTTTGGCTCTATGATAAATTGGAG
AATGATGATGCCGATTTGCACTCGAGGAAGGAAGTGTTTGAAACCGTTGT
CAAGTCTTTCTTCAACGCTCACGCTCCGACCGATGATAAAAATGACAAGC
ATTCTTCCAACTTTCGCGATTTGCAAAGAGTCTGGCGAGTTGAGTTTGAG
AACTACGGCAAGTCAGATGATTTTGATTCCAAGCTCAAACGTCTGGAGAA
GTCACAGAATCTGCTCAAAGTTGGTATTGCTGTCAGAAAGTTCCTCGACA
CTGTCAACGTCGATGCCAGCTGGATGTGGGATATGCAAAAACTTGAAGAA
GATCTTAAGGCAGGTAACGTGAAACGCCGTAAAACGCCGAAGAATATTGA
GAAACCGGCGCCTGAGCCCCCTGAACCTGAGTCCTCCGGTTCCTATGAGC
CACGTGCCGCGGACAGTGACTTTGATATCGACACCGCCGAGAAAGTGGCC
GGTGCCCAGAACGACGACGACGAAGAAGAAGGCTCGGAATCCGATGAACT
CATGCATGGATCAATGTCGCAGAGTAAAGAAAATGGCACTGCCGTTCGAC
GGTCGATGCGCGTCGCCAAAGGAAAAGTAGGCAGGTACACACTAGGTCCG
GGAGCGAAAAGAGGCCAGAAAAGGAGAGCCGCAGCTCGTCGCGCTGCGCT
TCATTTCTCTGAATCTCCAACTCCTAGCCTTTCTGACGATACTCCTATAA
TCCAACGAGCACGAGCGATGAAAAAAGCGCACGCTCGAAAACACGGAAAC
CGTGACAAGCACTGGAACGATGATGTTGCAAAAATTGGGCACGTCATGAA
ACGGGGTACAGGACCTGTTTCAAGGCCTGGAGCACCTCGCACAGGAATTT
CCAGGGGACGAGTACTGAAGGATGTGCAGAGAAGAACAACTCGAAGTAAA
CACAACGTGACGAAACCTATAGAAGACGAGGAGAGACCTAATGATGAGTT
TCGCTATCCCGGAAACGATTTTGATATTGGCACTGATGACATACACGGAG
ATCTTGGTGATGCAACAACTGGTGGGTCCATACCGGGGGCGCCAGTTACA
TTTCCGGATCGCAAATCTCGGCAAATCGCTTTGTTAGACTCACAGTGA
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protein sequence of Gvermi12777.t1

>Gvermi12777.t1 ID=Gvermi12777.t1|Name=Gvermi12777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=516bp
MANPIVSDLPFTERIEMREKALAWISRDTGLQEFLIPDELTSDWSAEQKK
LWTTTVIDRFMSAKHQAGREARARVLARENASWLRRACVRLQQDLSDHRD
LTRMAVLMETLWNEVSASFSDSKWAECSIMFDSALIALRVAYVWLYDKLE
NDDADLHSRKEVFETVVKSFFNAHAPTDDKNDKHSSNFRDLQRVWRVEFE
NYGKSDDFDSKLKRLEKSQNLLKVGIAVRKFLDTVNVDASWMWDMQKLEE
DLKAGNVKRRKTPKNIEKPAPEPPEPESSGSYEPRAADSDFDIDTAEKVA
GAQNDDDEEEGSESDELMHGSMSQSKENGTAVRRSMRVAKGKVGRYTLGP
GAKRGQKRRAAARRAALHFSESPTPSLSDDTPIIQRARAMKKAHARKHGN
RDKHWNDDVAKIGHVMKRGTGPVSRPGAPRTGISRGRVLKDVQRRTTRSK
HNVTKPIEDEERPNDEFRYPGNDFDIGTDDIHGDLGDATTGGSIPGAPVT
FPDRKSRQIALLDSQ*
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mRNA from alignment at ScGOVlb_425:1497522..1499069-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12777.t1 ID=Gvermi12777.t1|Name=Gvermi12777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at ScGOVlb_425:1497522..1499069- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTAATCCAATTGTTTCTGACTTGCCGTTTACCGAGCGTATAGAGAT
GCGAGAGAAGGCGCTGGCATGGATTTCTCGTGATACAGGTCTTCAGGAAT
TTCTCATCCCCGACGAATTGACATCAGACTGGAGTGCTGAACAGAAAAAA
TTATGGACAACGACCGTAATCGATCGATTCATGAGCGCAAAGCATCAGGC
CGGCCGTGAAGCGCGCGCCCGCGTCTTAGCACGTGAGAATGCAAGCTGGC
TGCGACGAGCGTGCGTCCGTTTGCAGCAGGACCTGTCGGACCACCGTGAT
CTTACCCGCATGGCCGTCCTAATGGAGACCTTGTGGAACGAAGTGAGCGC
GTCGTTCAGTGACTCCAAGTGGGCGGAGTGTTCCATCATGTTCGATTCGG
CCCTCATAGCTTTACGAGTTGCGTACGTTTGGCTCTATGATAAATTGGAG
AATGATGATGCCGATTTGCACTCGAGGAAGGAAGTGTTTGAAACCGTTGT
CAAGTCTTTCTTCAACGCTCACGCTCCGACCGATGATAAAAATGACAAGC
ATTCTTCCAACTTTCGCGATTTGCAAAGAGTCTGGCGAGTTGAGTTTGAG
AACTACGGCAAGTCAGATGATTTTGATTCCAAGCTCAAACGTCTGGAGAA
GTCACAGAATCTGCTCAAAGTTGGTATTGCTGTCAGAAAGTTCCTCGACA
CTGTCAACGTCGATGCCAGCTGGATGTGGGATATGCAAAAACTTGAAGAA
GATCTTAAGGCAGGTAACGTGAAACGCCGTAAAACGCCGAAGAATATTGA
GAAACCGGCGCCTGAGCCCCCTGAACCTGAGTCCTCCGGTTCCTATGAGC
CACGTGCCGCGGACAGTGACTTTGATATCGACACCGCCGAGAAAGTGGCC
GGTGCCCAGAACGACGACGACGAAGAAGAAGGCTCGGAATCCGATGAACT
CATGCATGGATCAATGTCGCAGAGTAAAGAAAATGGCACTGCCGTTCGAC
GGTCGATGCGCGTCGCCAAAGGAAAAGTAGGCAGGTACACACTAGGTCCG
GGAGCGAAAAGAGGCCAGAAAAGGAGAGCCGCAGCTCGTCGCGCTGCGCT
TCATTTCTCTGAATCTCCAACTCCTAGCCTTTCTGACGATACTCCTATAA
TCCAACGAGCACGAGCGATGAAAAAAGCGCACGCTCGAAAACACGGAAAC
CGTGACAAGCACTGGAACGATGATGTTGCAAAAATTGGGCACGTCATGAA
ACGGGGTACAGGACCTGTTTCAAGGCCTGGAGCACCTCGCACAGGAATTT
CCAGGGGACGAGTACTGAAGGATGTGCAGAGAAGAACAACTCGAAGTAAA
CACAACGTGACGAAACCTATAGAAGACGAGGAGAGACCTAATGATGAGTT
TCGCTATCCCGGAAACGATTTTGATATTGGCACTGATGACATACACGGAG
ATCTTGGTGATGCAACAACTGGTGGGTCCATACCGGGGGCGCCAGTTACA
TTTCCGGATCGCAAATCTCGGCAAATCGCTTTGTTAGACTCACAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1497522..1499069-

>Gvermi12777.t1 ID=Gvermi12777.t1|Name=Gvermi12777.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1548bp|location=Sequence derived from alignment at ScGOVlb_425:1497522..1499069- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTAATCCAATTGTTTCTGACTTGCCGTTTACCGAGCGTATAGAGAT
GCGAGAGAAGGCGCTGGCATGGATTTCTCGTGATACAGGTCTTCAGGAAT
TTCTCATCCCCGACGAATTGACATCAGACTGGAGTGCTGAACAGAAAAAA
TTATGGACAACGACCGTAATCGATCGATTCATGAGCGCAAAGCATCAGGC
CGGCCGTGAAGCGCGCGCCCGCGTCTTAGCACGTGAGAATGCAAGCTGGC
TGCGACGAGCGTGCGTCCGTTTGCAGCAGGACCTGTCGGACCACCGTGAT
CTTACCCGCATGGCCGTCCTAATGGAGACCTTGTGGAACGAAGTGAGCGC
GTCGTTCAGTGACTCCAAGTGGGCGGAGTGTTCCATCATGTTCGATTCGG
CCCTCATAGCTTTACGAGTTGCGTACGTTTGGCTCTATGATAAATTGGAG
AATGATGATGCCGATTTGCACTCGAGGAAGGAAGTGTTTGAAACCGTTGT
CAAGTCTTTCTTCAACGCTCACGCTCCGACCGATGATAAAAATGACAAGC
ATTCTTCCAACTTTCGCGATTTGCAAAGAGTCTGGCGAGTTGAGTTTGAG
AACTACGGCAAGTCAGATGATTTTGATTCCAAGCTCAAACGTCTGGAGAA
GTCACAGAATCTGCTCAAAGTTGGTATTGCTGTCAGAAAGTTCCTCGACA
CTGTCAACGTCGATGCCAGCTGGATGTGGGATATGCAAAAACTTGAAGAA
GATCTTAAGGCAGGTAACGTGAAACGCCGTAAAACGCCGAAGAATATTGA
GAAACCGGCGCCTGAGCCCCCTGAACCTGAGTCCTCCGGTTCCTATGAGC
CACGTGCCGCGGACAGTGACTTTGATATCGACACCGCCGAGAAAGTGGCC
GGTGCCCAGAACGACGACGACGAAGAAGAAGGCTCGGAATCCGATGAACT
CATGCATGGATCAATGTCGCAGAGTAAAGAAAATGGCACTGCCGTTCGAC
GGTCGATGCGCGTCGCCAAAGGAAAAGTAGGCAGGTACACACTAGGTCCG
GGAGCGAAAAGAGGCCAGAAAAGGAGAGCCGCAGCTCGTCGCGCTGCGCT
TCATTTCTCTGAATCTCCAACTCCTAGCCTTTCTGACGATACTCCTATAA
TCCAACGAGCACGAGCGATGAAAAAAGCGCACGCTCGAAAACACGGAAAC
CGTGACAAGCACTGGAACGATGATGTTGCAAAAATTGGGCACGTCATGAA
ACGGGGTACAGGACCTGTTTCAAGGCCTGGAGCACCTCGCACAGGAATTT
CCAGGGGACGAGTACTGAAGGATGTGCAGAGAAGAACAACTCGAAGTAAA
CACAACGTGACGAAACCTATAGAAGACGAGGAGAGACCTAATGATGAGTT
TCGCTATCCCGGAAACGATTTTGATATTGGCACTGATGACATACACGGAG
ATCTTGGTGATGCAACAACTGGTGGGTCCATACCGGGGGCGCCAGTTACA
TTTCCGGATCGCAAATCTCGGCAAATCGCTTTGTTAGACTCACAGTGA
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