Gvermi12817.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12817.t1
Unique NameGvermi12817.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length816
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1680049..1682496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008616131.1
PFAMsLipase_3
Max annot lvl2759|Eukaryota
Evalue2.22e-40
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Descriptionphospholipase A1 activity
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12817Gvermi12817Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1680049..1682496 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12817.t1.stop1Gvermi12817.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1680049..1680051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12817.t1.CDS1Gvermi12817.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1680049..1682496 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12817.t1.exon1Gvermi12817.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1680049..1682496 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12817.t1.start1Gvermi12817.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1682494..1682496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12817.t1Gvermi12817.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1680049..1682496 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12817.t1 ID=Gvermi12817.t1|Name=Gvermi12817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=816bp
MTDSDGDCRFDDATESLSSDDMLSLAHTEEEIAVPLTPRFKTFKKLEVID
SKRINFMTRTYNIVAFVALVCSATVIILARTIFSKSFEGIPGQFPNLFLY
EFPKSFILVDSIVFFVLFAYSLVLLVVFALILMRRGVAHLMNEQVWALLL
LVSTATYLIPFEASIRLRRDYFELPVPEAGNGLTIVNAFVCLRFCSFSFL
YILYLWFGTHSYRYLNRILSFKDWKFYAPKIGVVLLYVGYKLGILFAYHI
TFSEMPFASLVGFLKLYSSVNEWPRLGVASVLVLTVLELKIAIWIGFEVF
QTFKALRSASYVDHRTKILGYRFFLHQQIVFNVVYISTFMLILFGLPNGA
QILQFSIHVKDQAGRGSYFDVLYAPFGLNLSILAFATVEAYTNLPAEINL
KRTVLGCRYRYVNHETEHCEPVVYRNTEPLSFSNDGLDLRPNCFVMQTTV
QLFNLSWFVYYHGTDKESKLRLERNTLPVKIKDFMYDKITDTKAIVAESD
DRITVAFKGTSSTQNLRTDIKVLHRSLIQVLDIEDVSEFEKQQSRSPTWC
NYLRRAKVHAGFADAYQSIKANLRRILLSVDREKDRSVLFTGHSLGGALA
TLCSIDASITLGIPTRRIAVSTFGSPRVGNEAFQKLYDTEILMHWRMVAG
GDIISRLPKLGYRHVGKKVILTSTGELFIDPSALEMLFWHSQTASIVHHR
KACYLLAIDAWCKSLGTNYKPDFWPFPVSENDSRKFITTFQKPISRSTNY
FSTSKTFLGRRPADRTKRMQEFAKAIDELKTRDQDFKEPEEEVTMKWAKL
AKSALNQFEAPALRV*
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spliced messenger RNA

>Gvermi12817.t1 ID=Gvermi12817.t1|Name=Gvermi12817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2448bp|location=Sequence derived from alignment at ScGOVlb_425:1680049..1682496- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATTCTGATGGAGACTGTCGCTTTGATGATGCAACGGAAAGCCT
TTCTTCTGATGATATGCTCTCATTGGCTCACACTGAAGAAGAAATTGCTG
TTCCACTTACACCGCGCTTCAAGACGTTCAAAAAACTAGAGGTTATTGAT
TCCAAGCGCATTAACTTTATGACCCGCACATACAACATTGTCGCTTTTGT
CGCTCTTGTGTGCTCTGCCACGGTGATCATACTAGCCAGAACGATTTTCT
CGAAGTCATTTGAGGGTATTCCTGGCCAATTTCCGAATCTGTTTTTGTAT
GAGTTTCCGAAATCATTCATATTGGTTGACAGTATCGTGTTCTTTGTATT
GTTTGCGTACTCGCTTGTATTGCTCGTTGTCTTTGCTCTTATTCTTATGA
GACGAGGGGTTGCACACCTCATGAATGAACAAGTGTGGGCGCTCCTACTT
CTTGTATCAACTGCGACTTATCTAATTCCATTTGAAGCGAGTATCCGACT
GAGACGAGATTATTTTGAACTTCCTGTTCCTGAAGCTGGAAATGGTTTAA
CCATTGTAAATGCATTTGTATGCTTACGATTCTGTTCATTTTCTTTTCTT
TACATTCTTTACCTATGGTTTGGTACTCATAGTTACCGATATTTAAATCG
GATTCTTTCTTTCAAGGACTGGAAATTCTATGCACCGAAGATAGGAGTTG
TTCTCCTCTATGTTGGATACAAACTCGGGATTCTCTTTGCCTATCACATA
ACCTTTTCCGAGATGCCTTTTGCTTCTCTTGTGGGATTTTTGAAGTTGTA
CAGTTCCGTCAATGAATGGCCGAGGTTAGGTGTTGCATCCGTTTTGGTTC
TAACTGTTTTAGAATTGAAGATTGCGATTTGGATTGGATTTGAAGTGTTT
CAAACCTTTAAAGCTCTGCGAAGCGCCTCATATGTGGATCATCGCACGAA
AATTTTGGGATATCGTTTCTTTTTGCATCAGCAAATTGTCTTCAATGTCG
TATATATTTCCACGTTCATGCTAATCCTGTTCGGCCTTCCTAATGGAGCT
CAGATTCTGCAATTTTCCATTCATGTGAAGGATCAAGCTGGGCGCGGGTC
ATATTTTGATGTTCTCTATGCACCTTTTGGGCTCAACCTTTCTATTTTAG
CTTTTGCCACTGTTGAAGCGTATACCAATCTTCCTGCGGAGATCAATTTG
AAGCGCACTGTTCTTGGTTGTCGTTACAGGTATGTGAATCATGAAACAGA
GCACTGTGAACCAGTCGTATATCGAAACACCGAGCCGCTATCGTTTTCGA
ATGACGGTTTGGACTTACGTCCAAATTGCTTCGTTATGCAGACCACTGTT
CAACTATTTAATTTGTCTTGGTTTGTGTACTACCATGGGACTGATAAAGA
AAGCAAACTTCGATTAGAAAGAAACACTCTGCCAGTTAAGATTAAGGACT
TTATGTACGACAAAATCACGGACACTAAAGCTATTGTTGCCGAATCCGAT
GATAGGATTACCGTTGCGTTCAAGGGAACATCAAGCACTCAGAATTTGCG
CACCGACATTAAAGTTTTGCACAGGTCCCTCATTCAAGTGTTGGATATCG
AAGACGTTTCGGAATTCGAAAAGCAGCAATCTAGGTCACCGACATGGTGT
AATTACTTACGACGAGCAAAGGTTCACGCTGGATTTGCAGATGCATATCA
ATCCATTAAAGCCAACCTCCGTCGAATATTGTTATCCGTCGATAGGGAGA
AAGACCGCTCGGTTTTGTTCACTGGCCATAGTCTCGGGGGGGCGCTGGCA
ACGTTATGTAGCATAGATGCATCAATTACCCTAGGAATCCCAACTCGGAG
AATCGCAGTGTCAACTTTCGGATCTCCACGAGTCGGCAATGAAGCCTTTC
AAAAACTCTACGATACCGAGATTTTGATGCATTGGCGTATGGTAGCGGGT
GGGGACATAATTTCGCGTCTTCCGAAATTGGGATATAGACATGTTGGAAA
GAAGGTTATTCTTACTTCTACTGGTGAGCTTTTCATCGATCCTAGTGCCC
TGGAGATGCTCTTCTGGCATTCTCAAACCGCCTCAATCGTTCATCACCGA
AAAGCATGCTATTTGCTAGCCATCGATGCTTGGTGCAAGAGTTTAGGGAC
GAATTACAAGCCAGACTTTTGGCCATTTCCAGTGTCAGAGAACGACAGCC
GAAAATTTATAACGACGTTTCAGAAACCTATCAGTCGAAGTACGAACTAT
TTTTCGACGTCCAAAACTTTCCTAGGACGTCGACCTGCAGATCGAACCAA
GCGAATGCAAGAATTTGCCAAAGCGATTGATGAGTTGAAAACAAGAGATC
AAGATTTTAAGGAACCAGAAGAAGAAGTGACAATGAAGTGGGCGAAATTG
GCAAAATCAGCGCTTAATCAGTTCGAAGCTCCTGCTCTTCGAGTGTAG
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protein sequence of Gvermi12817.t1

>Gvermi12817.t1 ID=Gvermi12817.t1|Name=Gvermi12817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=816bp
MTDSDGDCRFDDATESLSSDDMLSLAHTEEEIAVPLTPRFKTFKKLEVID
SKRINFMTRTYNIVAFVALVCSATVIILARTIFSKSFEGIPGQFPNLFLY
EFPKSFILVDSIVFFVLFAYSLVLLVVFALILMRRGVAHLMNEQVWALLL
LVSTATYLIPFEASIRLRRDYFELPVPEAGNGLTIVNAFVCLRFCSFSFL
YILYLWFGTHSYRYLNRILSFKDWKFYAPKIGVVLLYVGYKLGILFAYHI
TFSEMPFASLVGFLKLYSSVNEWPRLGVASVLVLTVLELKIAIWIGFEVF
QTFKALRSASYVDHRTKILGYRFFLHQQIVFNVVYISTFMLILFGLPNGA
QILQFSIHVKDQAGRGSYFDVLYAPFGLNLSILAFATVEAYTNLPAEINL
KRTVLGCRYRYVNHETEHCEPVVYRNTEPLSFSNDGLDLRPNCFVMQTTV
QLFNLSWFVYYHGTDKESKLRLERNTLPVKIKDFMYDKITDTKAIVAESD
DRITVAFKGTSSTQNLRTDIKVLHRSLIQVLDIEDVSEFEKQQSRSPTWC
NYLRRAKVHAGFADAYQSIKANLRRILLSVDREKDRSVLFTGHSLGGALA
TLCSIDASITLGIPTRRIAVSTFGSPRVGNEAFQKLYDTEILMHWRMVAG
GDIISRLPKLGYRHVGKKVILTSTGELFIDPSALEMLFWHSQTASIVHHR
KACYLLAIDAWCKSLGTNYKPDFWPFPVSENDSRKFITTFQKPISRSTNY
FSTSKTFLGRRPADRTKRMQEFAKAIDELKTRDQDFKEPEEEVTMKWAKL
AKSALNQFEAPALRV*
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mRNA from alignment at ScGOVlb_425:1680049..1682496-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12817.t1 ID=Gvermi12817.t1|Name=Gvermi12817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2448bp|location=Sequence derived from alignment at ScGOVlb_425:1680049..1682496- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGATTCTGATGGAGACTGTCGCTTTGATGATGCAACGGAAAGCCT
TTCTTCTGATGATATGCTCTCATTGGCTCACACTGAAGAAGAAATTGCTG
TTCCACTTACACCGCGCTTCAAGACGTTCAAAAAACTAGAGGTTATTGAT
TCCAAGCGCATTAACTTTATGACCCGCACATACAACATTGTCGCTTTTGT
CGCTCTTGTGTGCTCTGCCACGGTGATCATACTAGCCAGAACGATTTTCT
CGAAGTCATTTGAGGGTATTCCTGGCCAATTTCCGAATCTGTTTTTGTAT
GAGTTTCCGAAATCATTCATATTGGTTGACAGTATCGTGTTCTTTGTATT
GTTTGCGTACTCGCTTGTATTGCTCGTTGTCTTTGCTCTTATTCTTATGA
GACGAGGGGTTGCACACCTCATGAATGAACAAGTGTGGGCGCTCCTACTT
CTTGTATCAACTGCGACTTATCTAATTCCATTTGAAGCGAGTATCCGACT
GAGACGAGATTATTTTGAACTTCCTGTTCCTGAAGCTGGAAATGGTTTAA
CCATTGTAAATGCATTTGTATGCTTACGATTCTGTTCATTTTCTTTTCTT
TACATTCTTTACCTATGGTTTGGTACTCATAGTTACCGATATTTAAATCG
GATTCTTTCTTTCAAGGACTGGAAATTCTATGCACCGAAGATAGGAGTTG
TTCTCCTCTATGTTGGATACAAACTCGGGATTCTCTTTGCCTATCACATA
ACCTTTTCCGAGATGCCTTTTGCTTCTCTTGTGGGATTTTTGAAGTTGTA
CAGTTCCGTCAATGAATGGCCGAGGTTAGGTGTTGCATCCGTTTTGGTTC
TAACTGTTTTAGAATTGAAGATTGCGATTTGGATTGGATTTGAAGTGTTT
CAAACCTTTAAAGCTCTGCGAAGCGCCTCATATGTGGATCATCGCACGAA
AATTTTGGGATATCGTTTCTTTTTGCATCAGCAAATTGTCTTCAATGTCG
TATATATTTCCACGTTCATGCTAATCCTGTTCGGCCTTCCTAATGGAGCT
CAGATTCTGCAATTTTCCATTCATGTGAAGGATCAAGCTGGGCGCGGGTC
ATATTTTGATGTTCTCTATGCACCTTTTGGGCTCAACCTTTCTATTTTAG
CTTTTGCCACTGTTGAAGCGTATACCAATCTTCCTGCGGAGATCAATTTG
AAGCGCACTGTTCTTGGTTGTCGTTACAGGTATGTGAATCATGAAACAGA
GCACTGTGAACCAGTCGTATATCGAAACACCGAGCCGCTATCGTTTTCGA
ATGACGGTTTGGACTTACGTCCAAATTGCTTCGTTATGCAGACCACTGTT
CAACTATTTAATTTGTCTTGGTTTGTGTACTACCATGGGACTGATAAAGA
AAGCAAACTTCGATTAGAAAGAAACACTCTGCCAGTTAAGATTAAGGACT
TTATGTACGACAAAATCACGGACACTAAAGCTATTGTTGCCGAATCCGAT
GATAGGATTACCGTTGCGTTCAAGGGAACATCAAGCACTCAGAATTTGCG
CACCGACATTAAAGTTTTGCACAGGTCCCTCATTCAAGTGTTGGATATCG
AAGACGTTTCGGAATTCGAAAAGCAGCAATCTAGGTCACCGACATGGTGT
AATTACTTACGACGAGCAAAGGTTCACGCTGGATTTGCAGATGCATATCA
ATCCATTAAAGCCAACCTCCGTCGAATATTGTTATCCGTCGATAGGGAGA
AAGACCGCTCGGTTTTGTTCACTGGCCATAGTCTCGGGGGGGCGCTGGCA
ACGTTATGTAGCATAGATGCATCAATTACCCTAGGAATCCCAACTCGGAG
AATCGCAGTGTCAACTTTCGGATCTCCACGAGTCGGCAATGAAGCCTTTC
AAAAACTCTACGATACCGAGATTTTGATGCATTGGCGTATGGTAGCGGGT
GGGGACATAATTTCGCGTCTTCCGAAATTGGGATATAGACATGTTGGAAA
GAAGGTTATTCTTACTTCTACTGGTGAGCTTTTCATCGATCCTAGTGCCC
TGGAGATGCTCTTCTGGCATTCTCAAACCGCCTCAATCGTTCATCACCGA
AAAGCATGCTATTTGCTAGCCATCGATGCTTGGTGCAAGAGTTTAGGGAC
GAATTACAAGCCAGACTTTTGGCCATTTCCAGTGTCAGAGAACGACAGCC
GAAAATTTATAACGACGTTTCAGAAACCTATCAGTCGAAGTACGAACTAT
TTTTCGACGTCCAAAACTTTCCTAGGACGTCGACCTGCAGATCGAACCAA
GCGAATGCAAGAATTTGCCAAAGCGATTGATGAGTTGAAAACAAGAGATC
AAGATTTTAAGGAACCAGAAGAAGAAGTGACAATGAAGTGGGCGAAATTG
GCAAAATCAGCGCTTAATCAGTTCGAAGCTCCTGCTCTTCGAGTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1680049..1682496-

>Gvermi12817.t1 ID=Gvermi12817.t1|Name=Gvermi12817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2448bp|location=Sequence derived from alignment at ScGOVlb_425:1680049..1682496- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGATTCTGATGGAGACTGTCGCTTTGATGATGCAACGGAAAGCCT
TTCTTCTGATGATATGCTCTCATTGGCTCACACTGAAGAAGAAATTGCTG
TTCCACTTACACCGCGCTTCAAGACGTTCAAAAAACTAGAGGTTATTGAT
TCCAAGCGCATTAACTTTATGACCCGCACATACAACATTGTCGCTTTTGT
CGCTCTTGTGTGCTCTGCCACGGTGATCATACTAGCCAGAACGATTTTCT
CGAAGTCATTTGAGGGTATTCCTGGCCAATTTCCGAATCTGTTTTTGTAT
GAGTTTCCGAAATCATTCATATTGGTTGACAGTATCGTGTTCTTTGTATT
GTTTGCGTACTCGCTTGTATTGCTCGTTGTCTTTGCTCTTATTCTTATGA
GACGAGGGGTTGCACACCTCATGAATGAACAAGTGTGGGCGCTCCTACTT
CTTGTATCAACTGCGACTTATCTAATTCCATTTGAAGCGAGTATCCGACT
GAGACGAGATTATTTTGAACTTCCTGTTCCTGAAGCTGGAAATGGTTTAA
CCATTGTAAATGCATTTGTATGCTTACGATTCTGTTCATTTTCTTTTCTT
TACATTCTTTACCTATGGTTTGGTACTCATAGTTACCGATATTTAAATCG
GATTCTTTCTTTCAAGGACTGGAAATTCTATGCACCGAAGATAGGAGTTG
TTCTCCTCTATGTTGGATACAAACTCGGGATTCTCTTTGCCTATCACATA
ACCTTTTCCGAGATGCCTTTTGCTTCTCTTGTGGGATTTTTGAAGTTGTA
CAGTTCCGTCAATGAATGGCCGAGGTTAGGTGTTGCATCCGTTTTGGTTC
TAACTGTTTTAGAATTGAAGATTGCGATTTGGATTGGATTTGAAGTGTTT
CAAACCTTTAAAGCTCTGCGAAGCGCCTCATATGTGGATCATCGCACGAA
AATTTTGGGATATCGTTTCTTTTTGCATCAGCAAATTGTCTTCAATGTCG
TATATATTTCCACGTTCATGCTAATCCTGTTCGGCCTTCCTAATGGAGCT
CAGATTCTGCAATTTTCCATTCATGTGAAGGATCAAGCTGGGCGCGGGTC
ATATTTTGATGTTCTCTATGCACCTTTTGGGCTCAACCTTTCTATTTTAG
CTTTTGCCACTGTTGAAGCGTATACCAATCTTCCTGCGGAGATCAATTTG
AAGCGCACTGTTCTTGGTTGTCGTTACAGGTATGTGAATCATGAAACAGA
GCACTGTGAACCAGTCGTATATCGAAACACCGAGCCGCTATCGTTTTCGA
ATGACGGTTTGGACTTACGTCCAAATTGCTTCGTTATGCAGACCACTGTT
CAACTATTTAATTTGTCTTGGTTTGTGTACTACCATGGGACTGATAAAGA
AAGCAAACTTCGATTAGAAAGAAACACTCTGCCAGTTAAGATTAAGGACT
TTATGTACGACAAAATCACGGACACTAAAGCTATTGTTGCCGAATCCGAT
GATAGGATTACCGTTGCGTTCAAGGGAACATCAAGCACTCAGAATTTGCG
CACCGACATTAAAGTTTTGCACAGGTCCCTCATTCAAGTGTTGGATATCG
AAGACGTTTCGGAATTCGAAAAGCAGCAATCTAGGTCACCGACATGGTGT
AATTACTTACGACGAGCAAAGGTTCACGCTGGATTTGCAGATGCATATCA
ATCCATTAAAGCCAACCTCCGTCGAATATTGTTATCCGTCGATAGGGAGA
AAGACCGCTCGGTTTTGTTCACTGGCCATAGTCTCGGGGGGGCGCTGGCA
ACGTTATGTAGCATAGATGCATCAATTACCCTAGGAATCCCAACTCGGAG
AATCGCAGTGTCAACTTTCGGATCTCCACGAGTCGGCAATGAAGCCTTTC
AAAAACTCTACGATACCGAGATTTTGATGCATTGGCGTATGGTAGCGGGT
GGGGACATAATTTCGCGTCTTCCGAAATTGGGATATAGACATGTTGGAAA
GAAGGTTATTCTTACTTCTACTGGTGAGCTTTTCATCGATCCTAGTGCCC
TGGAGATGCTCTTCTGGCATTCTCAAACCGCCTCAATCGTTCATCACCGA
AAAGCATGCTATTTGCTAGCCATCGATGCTTGGTGCAAGAGTTTAGGGAC
GAATTACAAGCCAGACTTTTGGCCATTTCCAGTGTCAGAGAACGACAGCC
GAAAATTTATAACGACGTTTCAGAAACCTATCAGTCGAAGTACGAACTAT
TTTTCGACGTCCAAAACTTTCCTAGGACGTCGACCTGCAGATCGAACCAA
GCGAATGCAAGAATTTGCCAAAGCGATTGATGAGTTGAAAACAAGAGATC
AAGATTTTAAGGAACCAGAAGAAGAAGTGACAATGAAGTGGGCGAAATTG
GCAAAATCAGCGCTTAATCAGTTCGAAGCTCCTGCTCTTCGAGTGTAG
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