Gvermi12867.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12867.t2
Unique NameGvermi12867.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length275
Homology
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BLAST of Gvermi12867.t2 vs. uniprot
Match: A0A2V3J1H7_9FLOR (Early nodulin-12A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H7_9FLOR)

HSP 1 Score: 193 bits (490), Expect = 3.120e-54
Identity = 99/182 (54.40%), Postives = 128/182 (70.33%), Query Frame = 0 
Query:    1 LAFEPCASSADCQGDRSCSQLAGSASGSVDLVDCGAGMCFCTSADGCAATDDCLDGETCASSTC-LSNSFVPGAAVLDDADPA--LGLNLDPCQTISDCQNPRNCVQYVDGVFGQCSGPNCFCIKLDPSCTSASQCSQGESCTKRESANNAICISETAVI-ADSMDEQIDDIPDSGPALPPM 178
            LAFEPC++   CQG+RSC QLA S  GSV++ DC AG+CFC   +GCA T DC            LSN+FVPGA  + ++D +  LGLNLD C++++DC+NPRNCVQ+VDG+FG+C G +CFC+  DPSC S S+CS GESCTKRE ++ AICISE A+   D   E+I +I  + P LPPM
Sbjct:   71 LAFEPCSTDLPCQGERSCVQLADSELGSVEITDCEAGLCFCADQEGCATTADCXXXXXXXXXXXXLSNAFVPGAIDISESDTSATLGLNLDRCESLADCRNPRNCVQFVDGLFGECQGTSCFCVLADPSCISISECSDGESCTKREGSSTAICISEAALENGDVTPEEITEITTNQPPLPPM 252
The following BLAST results are available for this feature:
BLAST of Gvermi12867.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J1H7_9FLOR3.120e-5454.40Early nodulin-12A n=1 Tax=Gracilariopsis chorda Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1846556..1847505 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12867.t2Gvermi12867.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1846556..1847505 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12867.t2 ID=Gvermi12867.t2|Name=Gvermi12867.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=275bp
LAFEPCASSADCQGDRSCSQLAGSASGSVDLVDCGAGMCFCTSADGCAAT
DDCLDGETCASSTCLSNSFVPGAAVLDDADPALGLNLDPCQTISDCQNPR
NCVQYVDGVFGQCSGPNCFCIKLDPSCTSASQCSQGESCTKRESANNAIC
ISETAVIADSMDEQIDDIPDSGPALPPMVNVPAMQPPAAQPSASQPPSTQ
PPAMQPAATQPPATQPPASQPPATQPPATSTAAVDVSEQPQEAETTETAE
VVETPDSEQQTQPLLPPAVSTPGV*
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