Gvermi12707.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12707.t1
Unique Name	Gvermi12707.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	753

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1079876..1082134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	37919.EP51_05915
PFAMs	Fe-ADH
Max annot lvl	201174\|Actinobacteria
Evalue	0.000377
EggNOG OGs	COG1454@1\|root,COG1454@2\|Bacteria,2I2FD@201174\|Actinobacteria,4FYD5@85025\|Nocardiaceae
Description	alcohol dehydrogenase
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12707	Gvermi12707	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1079876..1082134 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12707.t1.start1	Gvermi12707.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1079876..1079878 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12707.t1.CDS1	Gvermi12707.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1079876..1082134 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12707.t1.exon1	Gvermi12707.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1079876..1082134 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12707.t1.stop1	Gvermi12707.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1082132..1082134 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12707.t1	Gvermi12707.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1079876..1082134 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1079876..1082134+
coding sequence from alignment at ScGOVlb_425:1079876..1082134+

mRNA sequence

>Gvermi12707.t1 ID=Gvermi12707.t1|Name=Gvermi12707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp
MSSGEKATANKTQFRDQHNLSGVLPQGAYTVLLRVKMKRELNAAEEKIIL
AEYARKSCAEQGVIRCDVLFRVDKLGIAKDDFYEIWISFADARAYTEHER
TSHAAKLRLCLEDPCGGDSSKLLTKLAHSVSLLRLVRPEISEWVSAFDYE
PENTTPITSKLQSSLKVKDDPDRIRRSLDMLISSVGLEDVIVLVATACAF
SIESTRSLRSECDEYLTDIEKSAGIVRTGILVDKNDPYRIIMMTVHDSAD
KAGACFDMELATDFITDDGWTVKRCHAVFPDKVGWEKKLSEADQKRFLGD
VVDDRFEKLVEGPGALVKYERAEAEESKMRLLQGAGSFDMLKQCIKSMTQ
PSTGIVKALLIGGWNPSRVHPVLVQIEYDRYNDPFETQFRFGPPVNSSEI
RTVDVRRAMEAVADYCPDIIIGYGGGTVMDMAKLLGRLGKASNSDLEMCF
NSIDGAAEDDAAAIAVAISSRPIPVILISSTVGSGAEMIEWCIVAGQRKD
GAIRRLPLYFYDRPGAVRLVTEKTAIQEPRLISPRRLDGIHASQGALELV
CLAMDTVMSLHERLEEQASKFAVRGLRQAYRVVMDARREPESGSGHSRDP
LVEAKTVIGLALDGLGRPGVCQRLCLAVVDSLVDGRLPTAFRQVLTRVTI
AVVEECIENRAEEARRAFSEVLKATRHNHRKELVADMLRKAEDCEVSLLP
RLGVVRRKIPHVAKRVSGYLQSETLSALERYLCQVEVLERVLWRAIAQEY
EL*

spliced messenger RNA

>Gvermi12707.t1 ID=Gvermi12707.t1|Name=Gvermi12707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at ScGOVlb_425:1079876..1082134+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGGGCGAGAAAGCCACAGCTAACAAAACGCAGTTTCGTGACCA
GCATAACTTGAGCGGCGTCCTCCCGCAAGGAGCGTACACCGTGCTCTTGA
GGGTGAAGATGAAAAGGGAATTGAACGCTGCCGAGGAGAAAATCATTCTG
GCAGAGTACGCGAGAAAGAGCTGCGCTGAGCAGGGAGTGATCCGCTGCGA
CGTTTTGTTCCGAGTGGATAAGCTTGGGATTGCCAAAGATGACTTCTACG
AAATATGGATATCATTTGCAGATGCGCGCGCGTACACTGAGCACGAACGA
ACCTCGCACGCGGCCAAGTTGCGTCTTTGCCTCGAAGACCCGTGCGGAGG
GGATAGTTCGAAGCTTCTCACGAAACTTGCGCACAGTGTGTCCCTTCTAA
GGCTGGTCAGGCCAGAAATTTCGGAATGGGTGTCTGCCTTCGACTACGAA
CCAGAGAACACCACCCCGATCACATCCAAGTTGCAGAGCAGTTTGAAGGT
GAAGGATGACCCGGACAGAATTCGGAGGTCTTTGGATATGCTCATATCCA
GTGTAGGGCTCGAGGATGTAATAGTTTTGGTGGCGACAGCATGTGCGTTT
TCAATAGAAAGCACGAGATCGCTTCGAAGTGAATGCGATGAGTATCTGAC
AGATATCGAGAAAAGTGCTGGAATTGTTCGAACAGGCATATTGGTCGACA
AAAACGATCCGTACAGAATTATAATGATGACCGTGCATGACAGCGCGGAC
AAGGCAGGTGCGTGTTTCGATATGGAACTGGCAACGGACTTCATCACAGA
CGACGGATGGACGGTGAAGCGATGCCATGCCGTGTTTCCAGACAAGGTTG
GGTGGGAGAAGAAGCTCAGCGAAGCGGATCAAAAGCGGTTCTTGGGTGAT
GTGGTGGACGATCGATTTGAAAAACTCGTTGAGGGGCCGGGTGCGTTGGT
AAAATATGAGCGTGCAGAGGCGGAAGAATCAAAAATGAGACTGTTGCAAG
GTGCGGGCTCGTTTGATATGCTCAAGCAGTGTATCAAGTCTATGACGCAG
CCATCGACTGGGATTGTAAAGGCTTTGCTGATTGGGGGCTGGAATCCATC
CAGGGTACATCCCGTTCTCGTGCAAATTGAATACGACAGATACAATGATC
CGTTTGAGACACAGTTTCGTTTTGGACCACCGGTGAACAGCTCAGAAATC
AGGACTGTAGATGTGAGAAGAGCGATGGAGGCAGTGGCGGACTATTGCCC
CGATATCATCATTGGTTATGGAGGTGGAACTGTGATGGACATGGCGAAGC
TGTTGGGAAGGCTGGGAAAGGCTTCAAACAGCGATCTCGAAATGTGTTTC
AACTCCATCGACGGGGCGGCCGAAGACGACGCAGCGGCCATTGCAGTTGC
AATAAGTTCACGACCCATTCCGGTAATACTGATCTCATCGACTGTCGGCA
GCGGCGCCGAGATGATCGAATGGTGCATTGTGGCAGGACAGCGAAAGGAC
GGTGCGATACGGCGGTTGCCGTTGTATTTCTATGACAGACCTGGAGCGGT
GCGGCTTGTCACAGAGAAGACGGCTATACAAGAGCCGAGGTTAATCAGTC
CGCGGCGTCTTGATGGAATTCACGCTTCGCAGGGGGCGTTGGAACTTGTG
TGCTTAGCAATGGATACTGTGATGTCGTTGCATGAACGTCTGGAGGAGCA
GGCGTCGAAGTTTGCTGTTCGAGGACTGAGACAAGCGTACAGAGTGGTGA
TGGATGCGCGGAGAGAGCCTGAGAGCGGTTCGGGACATTCGCGGGACCCT
CTGGTTGAAGCGAAGACTGTCATTGGGCTGGCATTGGATGGGTTGGGTCG
ACCGGGGGTTTGCCAACGACTGTGTCTGGCAGTTGTGGATTCACTTGTGG
ACGGCAGACTGCCAACAGCGTTTCGGCAGGTTCTGACGCGTGTGACCATC
GCAGTAGTGGAAGAGTGCATTGAAAATCGGGCGGAAGAAGCAAGGAGGGC
GTTTTCAGAGGTGCTCAAGGCAACGAGACACAATCACCGCAAAGAGCTGG
TGGCGGACATGCTGAGGAAGGCTGAAGACTGTGAGGTTTCATTGCTGCCG
AGGTTGGGTGTGGTGCGGCGCAAGATACCGCACGTGGCAAAGCGCGTGAG
CGGATACTTGCAAAGCGAGACGCTGAGCGCGTTGGAGCGCTACCTGTGCC
AAGTGGAGGTGTTGGAGCGCGTTCTGTGGCGCGCAATCGCACAGGAATAC
GAGCTGTAG

protein sequence of Gvermi12707.t1

>Gvermi12707.t1 ID=Gvermi12707.t1|Name=Gvermi12707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=753bp
MSSGEKATANKTQFRDQHNLSGVLPQGAYTVLLRVKMKRELNAAEEKIIL
AEYARKSCAEQGVIRCDVLFRVDKLGIAKDDFYEIWISFADARAYTEHER
TSHAAKLRLCLEDPCGGDSSKLLTKLAHSVSLLRLVRPEISEWVSAFDYE
PENTTPITSKLQSSLKVKDDPDRIRRSLDMLISSVGLEDVIVLVATACAF
SIESTRSLRSECDEYLTDIEKSAGIVRTGILVDKNDPYRIIMMTVHDSAD
KAGACFDMELATDFITDDGWTVKRCHAVFPDKVGWEKKLSEADQKRFLGD
VVDDRFEKLVEGPGALVKYERAEAEESKMRLLQGAGSFDMLKQCIKSMTQ
PSTGIVKALLIGGWNPSRVHPVLVQIEYDRYNDPFETQFRFGPPVNSSEI
RTVDVRRAMEAVADYCPDIIIGYGGGTVMDMAKLLGRLGKASNSDLEMCF
NSIDGAAEDDAAAIAVAISSRPIPVILISSTVGSGAEMIEWCIVAGQRKD
GAIRRLPLYFYDRPGAVRLVTEKTAIQEPRLISPRRLDGIHASQGALELV
CLAMDTVMSLHERLEEQASKFAVRGLRQAYRVVMDARREPESGSGHSRDP
LVEAKTVIGLALDGLGRPGVCQRLCLAVVDSLVDGRLPTAFRQVLTRVTI
AVVEECIENRAEEARRAFSEVLKATRHNHRKELVADMLRKAEDCEVSLLP
RLGVVRRKIPHVAKRVSGYLQSETLSALERYLCQVEVLERVLWRAIAQEY
EL*

mRNA from alignment at ScGOVlb_425:1079876..1082134+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12707.t1 ID=Gvermi12707.t1|Name=Gvermi12707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at ScGOVlb_425:1079876..1082134+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCGGGCGAGAAAGCCACAGCTAACAAAACGCAGTTTCGTGACCA
GCATAACTTGAGCGGCGTCCTCCCGCAAGGAGCGTACACCGTGCTCTTGA
GGGTGAAGATGAAAAGGGAATTGAACGCTGCCGAGGAGAAAATCATTCTG
GCAGAGTACGCGAGAAAGAGCTGCGCTGAGCAGGGAGTGATCCGCTGCGA
CGTTTTGTTCCGAGTGGATAAGCTTGGGATTGCCAAAGATGACTTCTACG
AAATATGGATATCATTTGCAGATGCGCGCGCGTACACTGAGCACGAACGA
ACCTCGCACGCGGCCAAGTTGCGTCTTTGCCTCGAAGACCCGTGCGGAGG
GGATAGTTCGAAGCTTCTCACGAAACTTGCGCACAGTGTGTCCCTTCTAA
GGCTGGTCAGGCCAGAAATTTCGGAATGGGTGTCTGCCTTCGACTACGAA
CCAGAGAACACCACCCCGATCACATCCAAGTTGCAGAGCAGTTTGAAGGT
GAAGGATGACCCGGACAGAATTCGGAGGTCTTTGGATATGCTCATATCCA
GTGTAGGGCTCGAGGATGTAATAGTTTTGGTGGCGACAGCATGTGCGTTT
TCAATAGAAAGCACGAGATCGCTTCGAAGTGAATGCGATGAGTATCTGAC
AGATATCGAGAAAAGTGCTGGAATTGTTCGAACAGGCATATTGGTCGACA
AAAACGATCCGTACAGAATTATAATGATGACCGTGCATGACAGCGCGGAC
AAGGCAGGTGCGTGTTTCGATATGGAACTGGCAACGGACTTCATCACAGA
CGACGGATGGACGGTGAAGCGATGCCATGCCGTGTTTCCAGACAAGGTTG
GGTGGGAGAAGAAGCTCAGCGAAGCGGATCAAAAGCGGTTCTTGGGTGAT
GTGGTGGACGATCGATTTGAAAAACTCGTTGAGGGGCCGGGTGCGTTGGT
AAAATATGAGCGTGCAGAGGCGGAAGAATCAAAAATGAGACTGTTGCAAG
GTGCGGGCTCGTTTGATATGCTCAAGCAGTGTATCAAGTCTATGACGCAG
CCATCGACTGGGATTGTAAAGGCTTTGCTGATTGGGGGCTGGAATCCATC
CAGGGTACATCCCGTTCTCGTGCAAATTGAATACGACAGATACAATGATC
CGTTTGAGACACAGTTTCGTTTTGGACCACCGGTGAACAGCTCAGAAATC
AGGACTGTAGATGTGAGAAGAGCGATGGAGGCAGTGGCGGACTATTGCCC
CGATATCATCATTGGTTATGGAGGTGGAACTGTGATGGACATGGCGAAGC
TGTTGGGAAGGCTGGGAAAGGCTTCAAACAGCGATCTCGAAATGTGTTTC
AACTCCATCGACGGGGCGGCCGAAGACGACGCAGCGGCCATTGCAGTTGC
AATAAGTTCACGACCCATTCCGGTAATACTGATCTCATCGACTGTCGGCA
GCGGCGCCGAGATGATCGAATGGTGCATTGTGGCAGGACAGCGAAAGGAC
GGTGCGATACGGCGGTTGCCGTTGTATTTCTATGACAGACCTGGAGCGGT
GCGGCTTGTCACAGAGAAGACGGCTATACAAGAGCCGAGGTTAATCAGTC
CGCGGCGTCTTGATGGAATTCACGCTTCGCAGGGGGCGTTGGAACTTGTG
TGCTTAGCAATGGATACTGTGATGTCGTTGCATGAACGTCTGGAGGAGCA
GGCGTCGAAGTTTGCTGTTCGAGGACTGAGACAAGCGTACAGAGTGGTGA
TGGATGCGCGGAGAGAGCCTGAGAGCGGTTCGGGACATTCGCGGGACCCT
CTGGTTGAAGCGAAGACTGTCATTGGGCTGGCATTGGATGGGTTGGGTCG
ACCGGGGGTTTGCCAACGACTGTGTCTGGCAGTTGTGGATTCACTTGTGG
ACGGCAGACTGCCAACAGCGTTTCGGCAGGTTCTGACGCGTGTGACCATC
GCAGTAGTGGAAGAGTGCATTGAAAATCGGGCGGAAGAAGCAAGGAGGGC
GTTTTCAGAGGTGCTCAAGGCAACGAGACACAATCACCGCAAAGAGCTGG
TGGCGGACATGCTGAGGAAGGCTGAAGACTGTGAGGTTTCATTGCTGCCG
AGGTTGGGTGTGGTGCGGCGCAAGATACCGCACGTGGCAAAGCGCGTGAG
CGGATACTTGCAAAGCGAGACGCTGAGCGCGTTGGAGCGCTACCTGTGCC
AAGTGGAGGTGTTGGAGCGCGTTCTGTGGCGCGCAATCGCACAGGAATAC
GAGCTGTAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1079876..1082134+

>Gvermi12707.t1 ID=Gvermi12707.t1|Name=Gvermi12707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2259bp|location=Sequence derived from alignment at ScGOVlb_425:1079876..1082134+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCGGGCGAGAAAGCCACAGCTAACAAAACGCAGTTTCGTGACCA
GCATAACTTGAGCGGCGTCCTCCCGCAAGGAGCGTACACCGTGCTCTTGA
GGGTGAAGATGAAAAGGGAATTGAACGCTGCCGAGGAGAAAATCATTCTG
GCAGAGTACGCGAGAAAGAGCTGCGCTGAGCAGGGAGTGATCCGCTGCGA
CGTTTTGTTCCGAGTGGATAAGCTTGGGATTGCCAAAGATGACTTCTACG
AAATATGGATATCATTTGCAGATGCGCGCGCGTACACTGAGCACGAACGA
ACCTCGCACGCGGCCAAGTTGCGTCTTTGCCTCGAAGACCCGTGCGGAGG
GGATAGTTCGAAGCTTCTCACGAAACTTGCGCACAGTGTGTCCCTTCTAA
GGCTGGTCAGGCCAGAAATTTCGGAATGGGTGTCTGCCTTCGACTACGAA
CCAGAGAACACCACCCCGATCACATCCAAGTTGCAGAGCAGTTTGAAGGT
GAAGGATGACCCGGACAGAATTCGGAGGTCTTTGGATATGCTCATATCCA
GTGTAGGGCTCGAGGATGTAATAGTTTTGGTGGCGACAGCATGTGCGTTT
TCAATAGAAAGCACGAGATCGCTTCGAAGTGAATGCGATGAGTATCTGAC
AGATATCGAGAAAAGTGCTGGAATTGTTCGAACAGGCATATTGGTCGACA
AAAACGATCCGTACAGAATTATAATGATGACCGTGCATGACAGCGCGGAC
AAGGCAGGTGCGTGTTTCGATATGGAACTGGCAACGGACTTCATCACAGA
CGACGGATGGACGGTGAAGCGATGCCATGCCGTGTTTCCAGACAAGGTTG
GGTGGGAGAAGAAGCTCAGCGAAGCGGATCAAAAGCGGTTCTTGGGTGAT
GTGGTGGACGATCGATTTGAAAAACTCGTTGAGGGGCCGGGTGCGTTGGT
AAAATATGAGCGTGCAGAGGCGGAAGAATCAAAAATGAGACTGTTGCAAG
GTGCGGGCTCGTTTGATATGCTCAAGCAGTGTATCAAGTCTATGACGCAG
CCATCGACTGGGATTGTAAAGGCTTTGCTGATTGGGGGCTGGAATCCATC
CAGGGTACATCCCGTTCTCGTGCAAATTGAATACGACAGATACAATGATC
CGTTTGAGACACAGTTTCGTTTTGGACCACCGGTGAACAGCTCAGAAATC
AGGACTGTAGATGTGAGAAGAGCGATGGAGGCAGTGGCGGACTATTGCCC
CGATATCATCATTGGTTATGGAGGTGGAACTGTGATGGACATGGCGAAGC
TGTTGGGAAGGCTGGGAAAGGCTTCAAACAGCGATCTCGAAATGTGTTTC
AACTCCATCGACGGGGCGGCCGAAGACGACGCAGCGGCCATTGCAGTTGC
AATAAGTTCACGACCCATTCCGGTAATACTGATCTCATCGACTGTCGGCA
GCGGCGCCGAGATGATCGAATGGTGCATTGTGGCAGGACAGCGAAAGGAC
GGTGCGATACGGCGGTTGCCGTTGTATTTCTATGACAGACCTGGAGCGGT
GCGGCTTGTCACAGAGAAGACGGCTATACAAGAGCCGAGGTTAATCAGTC
CGCGGCGTCTTGATGGAATTCACGCTTCGCAGGGGGCGTTGGAACTTGTG
TGCTTAGCAATGGATACTGTGATGTCGTTGCATGAACGTCTGGAGGAGCA
GGCGTCGAAGTTTGCTGTTCGAGGACTGAGACAAGCGTACAGAGTGGTGA
TGGATGCGCGGAGAGAGCCTGAGAGCGGTTCGGGACATTCGCGGGACCCT
CTGGTTGAAGCGAAGACTGTCATTGGGCTGGCATTGGATGGGTTGGGTCG
ACCGGGGGTTTGCCAACGACTGTGTCTGGCAGTTGTGGATTCACTTGTGG
ACGGCAGACTGCCAACAGCGTTTCGGCAGGTTCTGACGCGTGTGACCATC
GCAGTAGTGGAAGAGTGCATTGAAAATCGGGCGGAAGAAGCAAGGAGGGC
GTTTTCAGAGGTGCTCAAGGCAACGAGACACAATCACCGCAAAGAGCTGG
TGGCGGACATGCTGAGGAAGGCTGAAGACTGTGAGGTTTCATTGCTGCCG
AGGTTGGGTGTGGTGCGGCGCAAGATACCGCACGTGGCAAAGCGCGTGAG
CGGATACTTGCAAAGCGAGACGCTGAGCGCGTTGGAGCGCTACCTGTGCC
AAGTGGAGGTGTTGGAGCGCGTTCTGTGGCGCGCAATCGCACAGGAATAC
GAGCTGTAG