Gvermi12770.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12770.t1
Unique NameGvermi12770.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1467322..1468897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5017.XP_007706711.1
Preferred nameDIC1
PFAMsMito_carr
Max annot lvl4751|Fungi
KEGG koko:K13577
KEGG TC2.A.29.2.2,2.A.29.2.3,2.A.29.2.7
KEGG Pathwayko04964,map04964
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008272,GO:0008509,GO:0008514,GO:0015075,GO:0015103,GO:0015116,GO:0015117,GO:0015131,GO:0015140,GO:0015141,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015698,GO:0015709,GO:0015711,GO:0015729,GO:0015740,GO:0015743,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0035435,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071423,GO:0071702,GO:0072348,GO:0098656,GO:0098660,GO:0098661,GO:1901682,GO:1902356,GO:1902358,GO:1903825,GO:1905039
Evalue9.87e-59
EggNOG OGsKOG0759@1|root,KOG0759@2759|Eukaryota,38GSC@33154|Opisthokonta,3NUAB@4751|Fungi,3QM68@4890|Ascomycota,200RE@147541|Dothideomycetes,4KDG0@92860|Pleosporales
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12770Gvermi12770Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1467322..1468897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12770.t1Gvermi12770.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1467322..1468897 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12770.t1.stop1Gvermi12770.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1467322..1467324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12770.t1.CDS1Gvermi12770.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1467322..1467628 -
Gvermi12770.t1.CDS2Gvermi12770.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1467780..1467978 -
Gvermi12770.t1.CDS3Gvermi12770.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1468057..1468356 -
Gvermi12770.t1.CDS4Gvermi12770.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1468429..1468586 -
Gvermi12770.t1.CDS5Gvermi12770.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1468653..1468897 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12770.t1.exon1Gvermi12770.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1467322..1467628 -
Gvermi12770.t1.exon2Gvermi12770.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1467780..1467978 -
Gvermi12770.t1.exon3Gvermi12770.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1468057..1468356 -
Gvermi12770.t1.exon4Gvermi12770.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1468429..1468586 -
Gvermi12770.t1.exon5Gvermi12770.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1468653..1468897 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12770.t1.intron1Gvermi12770.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1467629..1467779 -
Gvermi12770.t1.intron2Gvermi12770.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1467979..1468056 -
Gvermi12770.t1.intron3Gvermi12770.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1468357..1468428 -
Gvermi12770.t1.intron4Gvermi12770.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1468587..1468652 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12770.t1.start1Gvermi12770.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1468895..1468897 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12770.t1 ID=Gvermi12770.t1|Name=Gvermi12770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=403bp
MLLSHTSPWAKWTDPFNMDLSAGKADNGTVDRFSLTRAVHKRDNIIRPKA
RATYPNILAVDANAHFHLTENLAKAFAAMLTHEIEFRLFKMSASGNKPND
EFSVAKYQRSVPASEHQKHPLYQQLALGGFSCGIATTFTHPIDTVKLRIQ
LQGAISGTEHRYNGLVSGLYRIAQEEGTFALYNGISPAILRAATYSASRL
GLYEPLRVLFTETLGKDQPTFGTKVAAAVSSGAIGAFVGNPCELIKVRMQ
QSDIYQYKHVGDGIVRITREEGFTALWNGTMPAALRAALLTSSQLATYDH
CKTLLKRYTGMEEGLKSHFGAAMTAGLVTTTVSTPADVVKSVVMHSKPRI
HPIECVRLITRTEGMRGFMRGWTANYARLGPHTLITVLTYENLRTALGWN
NL*
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spliced messenger RNA

>Gvermi12770.t1 ID=Gvermi12770.t1|Name=Gvermi12770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at ScGOVlb_425:1467322..1468897- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCTGTCGCATACCTCACCATGGGCCAAATGGACGGACCCGTTCAA
TATGGATCTTTCAGCTGGCAAAGCAGACAACGGGACAGTCGACCGGTTCT
CCTTGACACGAGCCGTTCACAAGCGTGATAATATCATCCGCCCGAAGGCC
CGAGCAACCTATCCAAATATTCTTGCAGTCGATGCAAATGCTCATTTTCA
TTTGACGGAAAATCTTGCAAAGGCATTCGCAGCAATGCTGACGCACGAAA
TCGAGTTCCGCTTATTCAAGATGTCTGCTTCTGGAAACAAACCCAATGAT
GAGTTTTCCGTCGCTAAATACCAACGATCGGTACCTGCATCGGAACACCA
GAAACACCCCCTATACCAACAACTGGCATTGGGTGGCTTTTCTTGTGGGA
TTGCCACCACTTTCACCCATCCAATTGATACTGTGAAGCTCCGTATTCAG
CTTCAAGGAGCGATTTCCGGTACCGAGCATCGGTACAATGGATTGGTATC
TGGCCTATATCGCATCGCTCAAGAAGAAGGTACGTTTGCCCTTTACAACG
GGATATCACCGGCTATACTAAGAGCGGCAACGTACAGTGCATCCCGGCTT
GGTCTTTATGAACCTCTGAGGGTATTATTCACTGAAACGCTCGGAAAAGA
TCAACCAACTTTTGGCACAAAAGTTGCAGCAGCAGTGTCGTCGGGTGCAA
TCGGCGCTTTTGTGGGTAATCCATGTGAGCTAATCAAAGTCCGCATGCAA
CAATCTGATATCTATCAGTATAAACATGTCGGGGACGGGATCGTACGGAT
CACCAGAGAAGAGGGGTTTACAGCGTTGTGGAACGGCACCATGCCCGCTG
CATTGCGAGCTGCATTGCTGACGTCGTCCCAACTTGCGACCTATGACCAT
TGCAAAACATTACTGAAGCGATACACTGGCATGGAAGAGGGCCTTAAATC
TCACTTTGGGGCGGCGATGACGGCAGGACTGGTCACTACTACGGTTTCGA
CGCCAGCTGATGTAGTGAAATCAGTTGTAATGCACTCGAAACCTCGTATA
CATCCAATTGAATGTGTTCGTCTTATAACGCGAACGGAGGGAATGCGAGG
TTTTATGCGTGGCTGGACAGCCAACTACGCACGACTTGGACCACACACGC
TTATTACAGTTTTGACATATGAGAATCTGAGAACAGCTTTAGGTTGGAAC
AACTTGTAA
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protein sequence of Gvermi12770.t1

>Gvermi12770.t1 ID=Gvermi12770.t1|Name=Gvermi12770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=403bp
MLLSHTSPWAKWTDPFNMDLSAGKADNGTVDRFSLTRAVHKRDNIIRPKA
RATYPNILAVDANAHFHLTENLAKAFAAMLTHEIEFRLFKMSASGNKPND
EFSVAKYQRSVPASEHQKHPLYQQLALGGFSCGIATTFTHPIDTVKLRIQ
LQGAISGTEHRYNGLVSGLYRIAQEEGTFALYNGISPAILRAATYSASRL
GLYEPLRVLFTETLGKDQPTFGTKVAAAVSSGAIGAFVGNPCELIKVRMQ
QSDIYQYKHVGDGIVRITREEGFTALWNGTMPAALRAALLTSSQLATYDH
CKTLLKRYTGMEEGLKSHFGAAMTAGLVTTTVSTPADVVKSVVMHSKPRI
HPIECVRLITRTEGMRGFMRGWTANYARLGPHTLITVLTYENLRTALGWN
NL*
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mRNA from alignment at ScGOVlb_425:1467322..1468897-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12770.t1 ID=Gvermi12770.t1|Name=Gvermi12770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1576bp|location=Sequence derived from alignment at ScGOVlb_425:1467322..1468897- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGCTGTCGCATACCTCACCATGGGCCAAATGGACGGACCCGTTCAA
TATGGATCTTTCAGCTGGCAAAGCAGACAACGGGACAGTCGACCGGTTCT
CCTTGACACGAGCCGTTCACAAGCGTGATAATATCATCCGCCCGAAGGCC
CGAGCAACCTATCCAAATATTCTTGCAGTCGATGCAAATGCTCATTTTCA
TTTGACGGAAAATCTTGCAAAGGCATTCGCAGCAATGCTGACGCAGTGCC
GCAATCACAGCTATTCAAGGTGATTTACTTGCACATCCTTCAATTGTAAG
CGATACTTCAGCGAAATCGAGTTCCGCTTATTCAAGATGTCTGCTTCTGG
AAACAAACCCAATGATGAGTTTTCCGTCGCTAAATACCAACGATCGGTAC
CTGCATCGGAACACCAGAAACACCCCCTATACCAACAACTGGCATTGGGT
GGCTTTTCTTGTGGGATTGGTACGATAGCATTGAATCAACTATTATCTAC
ACGAAGACATGAGCTAACCTGAGGATGTGTTTCATCAAAAGCCACCACTT
TCACCCATCCAATTGATACTGTGAAGCTCCGTATTCAGCTTCAAGGAGCG
ATTTCCGGTACCGAGCATCGGTACAATGGATTGGTATCTGGCCTATATCG
CATCGCTCAAGAAGAAGGTACGTTTGCCCTTTACAACGGGATATCACCGG
CTATACTAAGAGCGGCAACGTACAGTGCATCCCGGCTTGGTCTTTATGAA
CCTCTGAGGGTATTATTCACTGAAACGCTCGGAAAAGATCAACCAACTTT
TGGCACAAAAGTTGCAGCAGCAGTGTCGTCGGGTGCAATCGGTACGTAAA
GAGAAGTCGCGCAATTCGTCATCGATAACAATGCCTTCTAACTGATTAAT
CGTGCTTTTCATGGCGAAGGCGCTTTTGTGGGTAATCCATGTGAGCTAAT
CAAAGTCCGCATGCAACAATCTGATATCTATCAGTATAAACATGTCGGGG
ACGGGATCGTACGGATCACCAGAGAAGAGGGGTTTACAGCGTTGTGGAAC
GGCACCATGCCCGCTGCATTGCGAGCTGCATTGCTGACGTCGTCCCAACT
TGCGACCTATGACCATTGGTAAGTAGCACTTGCACGGGTAATGTTTGCCT
CTGAGAGAGTGGATTGCTAAACCGCTGATGAGCTACAAAGCACTCATTAC
TAACGTCAGTTTTCTTTTTGTTTGTGGCTGCCATAAAACATGCTACCGGC
TACGATACTGTTAATGAAGCAAAACATTACTGAAGCGATACACTGGCATG
GAAGAGGGCCTTAAATCTCACTTTGGGGCGGCGATGACGGCAGGACTGGT
CACTACTACGGTTTCGACGCCAGCTGATGTAGTGAAATCAGTTGTAATGC
ACTCGAAACCTCGTATACATCCAATTGAATGTGTTCGTCTTATAACGCGA
ACGGAGGGAATGCGAGGTTTTATGCGTGGCTGGACAGCCAACTACGCACG
ACTTGGACCACACACGCTTATTACAGTTTTGACATATGAGAATCTGAGAA
CAGCTTTAGGTTGGAACAACTTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1467322..1468897-

>Gvermi12770.t1 ID=Gvermi12770.t1|Name=Gvermi12770.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1209bp|location=Sequence derived from alignment at ScGOVlb_425:1467322..1468897- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGCTGTCGCATACCTCACCATGGGCCAAATGGACGGACCCGTTCAA
TATGGATCTTTCAGCTGGCAAAGCAGACAACGGGACAGTCGACCGGTTCT
CCTTGACACGAGCCGTTCACAAGCGTGATAATATCATCCGCCCGAAGGCC
CGAGCAACCTATCCAAATATTCTTGCAGTCGATGCAAATGCTCATTTTCA
TTTGACGGAAAATCTTGCAAAGGCATTCGCAGCAATGCTGACGCACGAAA
TCGAGTTCCGCTTATTCAAGATGTCTGCTTCTGGAAACAAACCCAATGAT
GAGTTTTCCGTCGCTAAATACCAACGATCGGTACCTGCATCGGAACACCA
GAAACACCCCCTATACCAACAACTGGCATTGGGTGGCTTTTCTTGTGGGA
TTGCCACCACTTTCACCCATCCAATTGATACTGTGAAGCTCCGTATTCAG
CTTCAAGGAGCGATTTCCGGTACCGAGCATCGGTACAATGGATTGGTATC
TGGCCTATATCGCATCGCTCAAGAAGAAGGTACGTTTGCCCTTTACAACG
GGATATCACCGGCTATACTAAGAGCGGCAACGTACAGTGCATCCCGGCTT
GGTCTTTATGAACCTCTGAGGGTATTATTCACTGAAACGCTCGGAAAAGA
TCAACCAACTTTTGGCACAAAAGTTGCAGCAGCAGTGTCGTCGGGTGCAA
TCGGCGCTTTTGTGGGTAATCCATGTGAGCTAATCAAAGTCCGCATGCAA
CAATCTGATATCTATCAGTATAAACATGTCGGGGACGGGATCGTACGGAT
CACCAGAGAAGAGGGGTTTACAGCGTTGTGGAACGGCACCATGCCCGCTG
CATTGCGAGCTGCATTGCTGACGTCGTCCCAACTTGCGACCTATGACCAT
TGCAAAACATTACTGAAGCGATACACTGGCATGGAAGAGGGCCTTAAATC
TCACTTTGGGGCGGCGATGACGGCAGGACTGGTCACTACTACGGTTTCGA
CGCCAGCTGATGTAGTGAAATCAGTTGTAATGCACTCGAAACCTCGTATA
CATCCAATTGAATGTGTTCGTCTTATAACGCGAACGGAGGGAATGCGAGG
TTTTATGCGTGGCTGGACAGCCAACTACGCACGACTTGGACCACACACGC
TTATTACAGTTTTGACATATGAGAATCTGAGAACAGCTTTAGGTTGGAAC
AACTTGTAA
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