Gvermi12663.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12663.t1
Unique NameGvermi12663.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length489
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:174570..176036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12663Gvermi12663Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 174570..176036 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12663.t1.start1Gvermi12663.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 174570..174572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12663.t1.CDS1Gvermi12663.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 174570..176036 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12663.t1.exon1Gvermi12663.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 174570..176036 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12663.t1.stop1Gvermi12663.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 176034..176036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12663.t1Gvermi12663.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 174570..176036 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12663.t1 ID=Gvermi12663.t1|Name=Gvermi12663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=489bp
MDASNAKTTTLLLDGLDFTPEFTLSTIQFGNEALNTVTTSLLTALIIANL
VSIINRLILLTRPDVFNYRSYARSHVFQNSDDPLRIWSWMRGWYDFRANG
PRATSPLHYRISKRLLLVPLCARIAVLVVTIGSIALALPYEKRLDACSRG
DYSLTQEDVVARPIVKQQDLLRVCYPIPLKSDLGAVRSTASYCSFSLSPG
DVNEMANLVKVLETTSTGRLVAAAYSPNTGVMLSIIASGQLLQASASFIE
WRTENGDFYHSLLSSWDGQRFIEAITVGLSFAMNETCKSVGITEQKDSNF
VFSVGFVDCAFNANEAFTYVTASVRESMRFRKQKQTALRVLDKGDEMSEA
RQTCPVDVTVQRPMINIVPLLVGLTLAFCLNVAVGVTVSHRGNAMDAAFH
LVREVLGHDTGANPLQVSARGDDIENVALRNRVCADGISGHKGFMHGQGD
TVVEEFDSRQTAGRCMQVARRGLRNMNEIVSEKGGNAV*
back to top

spliced messenger RNA

>Gvermi12663.t1 ID=Gvermi12663.t1|Name=Gvermi12663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at ScGOVlb_425:174570..176036+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCGTCGAACGCCAAAACGACAACACTTTTGTTGGATGGTCTTGA
CTTCACTCCAGAATTCACGCTATCCACTATTCAATTCGGAAATGAGGCAC
TTAATACTGTCACCACGTCTCTGCTCACCGCGTTGATAATCGCCAATCTT
GTGAGCATCATCAATCGATTGATACTGTTGACTCGCCCCGACGTGTTCAA
CTACCGCTCGTATGCGCGGTCACACGTTTTCCAAAATTCAGACGACCCGT
TGCGAATCTGGTCCTGGATGCGTGGATGGTACGACTTTCGAGCCAACGGC
CCCCGTGCTACGAGTCCTCTGCATTACCGAATTTCTAAACGCCTTCTTCT
CGTGCCGCTTTGTGCTCGCATTGCCGTACTTGTCGTGACCATTGGGTCGA
TTGCGTTGGCATTGCCGTATGAAAAGCGTCTTGATGCTTGCAGTCGTGGG
GATTACTCATTAACTCAGGAAGACGTTGTTGCACGCCCTATTGTAAAGCA
ACAGGACTTACTGCGAGTATGTTACCCTATACCTCTCAAATCGGATCTCG
GTGCGGTAAGATCGACAGCCTCTTATTGTTCGTTCAGTTTGTCCCCTGGT
GATGTGAATGAAATGGCCAACCTCGTGAAAGTTCTTGAAACCACCTCGAC
GGGCAGATTAGTAGCTGCGGCTTATTCTCCAAATACTGGGGTGATGTTGT
CGATTATTGCCTCGGGCCAATTGCTTCAGGCTTCTGCTTCATTTATAGAA
TGGAGAACTGAAAACGGCGATTTCTACCACTCTTTGCTTTCGAGCTGGGA
CGGTCAAAGATTCATCGAAGCAATTACCGTTGGTTTGAGCTTTGCGATGA
ATGAGACATGCAAGAGTGTAGGAATCACAGAACAGAAAGATTCCAATTTT
GTATTCAGTGTTGGGTTTGTTGATTGCGCTTTTAACGCCAACGAGGCATT
CACGTATGTCACTGCATCAGTGAGAGAGAGTATGCGCTTTCGAAAACAAA
AACAGACTGCTCTTCGTGTCCTCGACAAGGGTGATGAGATGTCCGAAGCA
AGGCAGACTTGCCCAGTTGATGTCACCGTCCAACGGCCGATGATCAACAT
CGTACCGCTGCTCGTCGGCCTCACGCTGGCGTTTTGCCTGAACGTGGCTG
TGGGAGTGACCGTTTCACATCGCGGAAATGCGATGGACGCGGCCTTCCAC
CTTGTGCGGGAAGTATTGGGACATGATACAGGCGCCAATCCGCTGCAGGT
GTCCGCGAGGGGCGACGACATCGAAAACGTTGCGCTGCGCAATCGTGTGT
GCGCTGATGGGATTTCGGGGCACAAGGGATTCATGCATGGGCAAGGCGAT
ACCGTCGTGGAGGAGTTTGACAGTAGACAGACGGCGGGGCGGTGCATGCA
GGTGGCTCGCCGCGGCCTGCGCAATATGAACGAGATAGTGTCGGAGAAAG
GAGGGAATGCGGTATGA
back to top

protein sequence of Gvermi12663.t1

>Gvermi12663.t1 ID=Gvermi12663.t1|Name=Gvermi12663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=489bp
MDASNAKTTTLLLDGLDFTPEFTLSTIQFGNEALNTVTTSLLTALIIANL
VSIINRLILLTRPDVFNYRSYARSHVFQNSDDPLRIWSWMRGWYDFRANG
PRATSPLHYRISKRLLLVPLCARIAVLVVTIGSIALALPYEKRLDACSRG
DYSLTQEDVVARPIVKQQDLLRVCYPIPLKSDLGAVRSTASYCSFSLSPG
DVNEMANLVKVLETTSTGRLVAAAYSPNTGVMLSIIASGQLLQASASFIE
WRTENGDFYHSLLSSWDGQRFIEAITVGLSFAMNETCKSVGITEQKDSNF
VFSVGFVDCAFNANEAFTYVTASVRESMRFRKQKQTALRVLDKGDEMSEA
RQTCPVDVTVQRPMINIVPLLVGLTLAFCLNVAVGVTVSHRGNAMDAAFH
LVREVLGHDTGANPLQVSARGDDIENVALRNRVCADGISGHKGFMHGQGD
TVVEEFDSRQTAGRCMQVARRGLRNMNEIVSEKGGNAV*
back to top

mRNA from alignment at ScGOVlb_425:174570..176036+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12663.t1 ID=Gvermi12663.t1|Name=Gvermi12663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at ScGOVlb_425:174570..176036+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCGTCGAACGCCAAAACGACAACACTTTTGTTGGATGGTCTTGA
CTTCACTCCAGAATTCACGCTATCCACTATTCAATTCGGAAATGAGGCAC
TTAATACTGTCACCACGTCTCTGCTCACCGCGTTGATAATCGCCAATCTT
GTGAGCATCATCAATCGATTGATACTGTTGACTCGCCCCGACGTGTTCAA
CTACCGCTCGTATGCGCGGTCACACGTTTTCCAAAATTCAGACGACCCGT
TGCGAATCTGGTCCTGGATGCGTGGATGGTACGACTTTCGAGCCAACGGC
CCCCGTGCTACGAGTCCTCTGCATTACCGAATTTCTAAACGCCTTCTTCT
CGTGCCGCTTTGTGCTCGCATTGCCGTACTTGTCGTGACCATTGGGTCGA
TTGCGTTGGCATTGCCGTATGAAAAGCGTCTTGATGCTTGCAGTCGTGGG
GATTACTCATTAACTCAGGAAGACGTTGTTGCACGCCCTATTGTAAAGCA
ACAGGACTTACTGCGAGTATGTTACCCTATACCTCTCAAATCGGATCTCG
GTGCGGTAAGATCGACAGCCTCTTATTGTTCGTTCAGTTTGTCCCCTGGT
GATGTGAATGAAATGGCCAACCTCGTGAAAGTTCTTGAAACCACCTCGAC
GGGCAGATTAGTAGCTGCGGCTTATTCTCCAAATACTGGGGTGATGTTGT
CGATTATTGCCTCGGGCCAATTGCTTCAGGCTTCTGCTTCATTTATAGAA
TGGAGAACTGAAAACGGCGATTTCTACCACTCTTTGCTTTCGAGCTGGGA
CGGTCAAAGATTCATCGAAGCAATTACCGTTGGTTTGAGCTTTGCGATGA
ATGAGACATGCAAGAGTGTAGGAATCACAGAACAGAAAGATTCCAATTTT
GTATTCAGTGTTGGGTTTGTTGATTGCGCTTTTAACGCCAACGAGGCATT
CACGTATGTCACTGCATCAGTGAGAGAGAGTATGCGCTTTCGAAAACAAA
AACAGACTGCTCTTCGTGTCCTCGACAAGGGTGATGAGATGTCCGAAGCA
AGGCAGACTTGCCCAGTTGATGTCACCGTCCAACGGCCGATGATCAACAT
CGTACCGCTGCTCGTCGGCCTCACGCTGGCGTTTTGCCTGAACGTGGCTG
TGGGAGTGACCGTTTCACATCGCGGAAATGCGATGGACGCGGCCTTCCAC
CTTGTGCGGGAAGTATTGGGACATGATACAGGCGCCAATCCGCTGCAGGT
GTCCGCGAGGGGCGACGACATCGAAAACGTTGCGCTGCGCAATCGTGTGT
GCGCTGATGGGATTTCGGGGCACAAGGGATTCATGCATGGGCAAGGCGAT
ACCGTCGTGGAGGAGTTTGACAGTAGACAGACGGCGGGGCGGTGCATGCA
GGTGGCTCGCCGCGGCCTGCGCAATATGAACGAGATAGTGTCGGAGAAAG
GAGGGAATGCGGTATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:174570..176036+

>Gvermi12663.t1 ID=Gvermi12663.t1|Name=Gvermi12663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1467bp|location=Sequence derived from alignment at ScGOVlb_425:174570..176036+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCGTCGAACGCCAAAACGACAACACTTTTGTTGGATGGTCTTGA
CTTCACTCCAGAATTCACGCTATCCACTATTCAATTCGGAAATGAGGCAC
TTAATACTGTCACCACGTCTCTGCTCACCGCGTTGATAATCGCCAATCTT
GTGAGCATCATCAATCGATTGATACTGTTGACTCGCCCCGACGTGTTCAA
CTACCGCTCGTATGCGCGGTCACACGTTTTCCAAAATTCAGACGACCCGT
TGCGAATCTGGTCCTGGATGCGTGGATGGTACGACTTTCGAGCCAACGGC
CCCCGTGCTACGAGTCCTCTGCATTACCGAATTTCTAAACGCCTTCTTCT
CGTGCCGCTTTGTGCTCGCATTGCCGTACTTGTCGTGACCATTGGGTCGA
TTGCGTTGGCATTGCCGTATGAAAAGCGTCTTGATGCTTGCAGTCGTGGG
GATTACTCATTAACTCAGGAAGACGTTGTTGCACGCCCTATTGTAAAGCA
ACAGGACTTACTGCGAGTATGTTACCCTATACCTCTCAAATCGGATCTCG
GTGCGGTAAGATCGACAGCCTCTTATTGTTCGTTCAGTTTGTCCCCTGGT
GATGTGAATGAAATGGCCAACCTCGTGAAAGTTCTTGAAACCACCTCGAC
GGGCAGATTAGTAGCTGCGGCTTATTCTCCAAATACTGGGGTGATGTTGT
CGATTATTGCCTCGGGCCAATTGCTTCAGGCTTCTGCTTCATTTATAGAA
TGGAGAACTGAAAACGGCGATTTCTACCACTCTTTGCTTTCGAGCTGGGA
CGGTCAAAGATTCATCGAAGCAATTACCGTTGGTTTGAGCTTTGCGATGA
ATGAGACATGCAAGAGTGTAGGAATCACAGAACAGAAAGATTCCAATTTT
GTATTCAGTGTTGGGTTTGTTGATTGCGCTTTTAACGCCAACGAGGCATT
CACGTATGTCACTGCATCAGTGAGAGAGAGTATGCGCTTTCGAAAACAAA
AACAGACTGCTCTTCGTGTCCTCGACAAGGGTGATGAGATGTCCGAAGCA
AGGCAGACTTGCCCAGTTGATGTCACCGTCCAACGGCCGATGATCAACAT
CGTACCGCTGCTCGTCGGCCTCACGCTGGCGTTTTGCCTGAACGTGGCTG
TGGGAGTGACCGTTTCACATCGCGGAAATGCGATGGACGCGGCCTTCCAC
CTTGTGCGGGAAGTATTGGGACATGATACAGGCGCCAATCCGCTGCAGGT
GTCCGCGAGGGGCGACGACATCGAAAACGTTGCGCTGCGCAATCGTGTGT
GCGCTGATGGGATTTCGGGGCACAAGGGATTCATGCATGGGCAAGGCGAT
ACCGTCGTGGAGGAGTTTGACAGTAGACAGACGGCGGGGCGGTGCATGCA
GGTGGCTCGCCGCGGCCTGCGCAATATGAACGAGATAGTGTCGGAGAAAG
GAGGGAATGCGGTATGA
back to top