Gvermi12685.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12685.t1
Unique Name	Gvermi12685.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	270

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:826895..827704 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8479.XP_008169939.1
Preferred name	COL6A6
PFAMs	Collagen,VWA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06236,ko:K06238,ko:K19720
KEGG Pathway	ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
GOs	GO:0005575,GO:0005576,GO:0031012,GO:0044421
Evalue	2.85e-05
EggNOG OGs	KOG3544@1\|root,KOG3544@2759\|Eukaryota,38DGH@33154\|Opisthokonta,3BA28@33208\|Metazoa,3CSUY@33213\|Bilateria,4858V@7711\|Chordata,48UTA@7742\|Vertebrata,4CDZB@8459\|Testudines
Description	Collagen alpha-6(VI)
COG category	W
BRITE	ko00000,ko00001,ko00536,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12685	Gvermi12685	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 826895..827704 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12685.t1.start1	Gvermi12685.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 826895..826897 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12685.t1.CDS1	Gvermi12685.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 826895..827704 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12685.t1.exon1	Gvermi12685.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 826895..827704 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12685.t1.stop1	Gvermi12685.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 827702..827704 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12685.t1	Gvermi12685.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 826895..827704 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:826895..827704+
coding sequence from alignment at ScGOVlb_425:826895..827704+

mRNA sequence

>Gvermi12685.t1 ID=Gvermi12685.t1|Name=Gvermi12685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=270bp
MKSLAVLIFLSLVIVASARDALEIPVALPFGAGSLPISVESRLKSRLEFA
KTRLESIRSPLVNRPRGARALALAFSEVAQGGCDPNVCFALDGSKVIDAD
SFKLQKDFVKLVAGVISLDEQSQFAALQYASTTSIISDLTVDANDFLLKV
DAAVQVKAPRTFVAQGLFGCMLQLFNTPFEANHIVLLGDGADNDINRLFA
SGSSFIAQNFLRNPNNQISAVAVGFEDTSGLERLVGSPDRVFTVDQWSEV
LDVTAELVVDVCGIDAIEF*

spliced messenger RNA

>Gvermi12685.t1 ID=Gvermi12685.t1|Name=Gvermi12685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=810bp|location=Sequence derived from alignment at ScGOVlb_425:826895..827704+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGCTTAGCAGTTCTCATCTTTCTCTCTCTTGTTATTGTGGCGAG
TGCTCGAGATGCACTAGAGATTCCCGTCGCTCTTCCGTTCGGCGCGGGAA
GTTTGCCAATTTCAGTCGAGTCTCGTTTGAAATCTCGACTTGAATTCGCC
AAAACACGTCTCGAGTCGATTCGATCCCCGCTTGTGAATCGCCCTAGAGG
GGCCAGGGCTTTAGCTTTGGCTTTCAGCGAAGTTGCCCAAGGCGGATGTG
ATCCCAATGTCTGTTTTGCTTTGGACGGAAGTAAGGTTATTGATGCTGAC
AGTTTCAAACTACAGAAGGATTTTGTCAAACTCGTTGCAGGAGTGATTTC
TCTCGATGAGCAATCTCAGTTTGCTGCATTACAGTATGCAAGTACAACGT
CTATCATTAGCGATTTAACCGTAGACGCCAATGATTTTCTTCTCAAGGTT
GATGCAGCTGTTCAGGTTAAAGCTCCACGGACGTTCGTTGCTCAAGGACT
CTTTGGTTGTATGCTGCAATTGTTCAACACTCCTTTCGAAGCAAACCATA
TAGTGCTTCTCGGTGACGGTGCAGATAATGATATCAATCGTCTGTTCGCG
TCTGGAAGTTCTTTTATTGCCCAAAACTTCTTGCGCAACCCTAACAACCA
GATTTCGGCAGTTGCTGTTGGATTTGAGGATACTAGCGGTTTGGAACGTT
TAGTCGGGAGCCCGGACCGCGTTTTTACTGTAGATCAATGGTCGGAAGTT
TTGGATGTAACAGCAGAGCTTGTGGTTGACGTGTGTGGAATCGATGCTAT
TGAGTTCTGA

protein sequence of Gvermi12685.t1

>Gvermi12685.t1 ID=Gvermi12685.t1|Name=Gvermi12685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=270bp
MKSLAVLIFLSLVIVASARDALEIPVALPFGAGSLPISVESRLKSRLEFA
KTRLESIRSPLVNRPRGARALALAFSEVAQGGCDPNVCFALDGSKVIDAD
SFKLQKDFVKLVAGVISLDEQSQFAALQYASTTSIISDLTVDANDFLLKV
DAAVQVKAPRTFVAQGLFGCMLQLFNTPFEANHIVLLGDGADNDINRLFA
SGSSFIAQNFLRNPNNQISAVAVGFEDTSGLERLVGSPDRVFTVDQWSEV
LDVTAELVVDVCGIDAIEF*

mRNA from alignment at ScGOVlb_425:826895..827704+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12685.t1 ID=Gvermi12685.t1|Name=Gvermi12685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=810bp|location=Sequence derived from alignment at ScGOVlb_425:826895..827704+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAGCTTAGCAGTTCTCATCTTTCTCTCTCTTGTTATTGTGGCGAG
TGCTCGAGATGCACTAGAGATTCCCGTCGCTCTTCCGTTCGGCGCGGGAA
GTTTGCCAATTTCAGTCGAGTCTCGTTTGAAATCTCGACTTGAATTCGCC
AAAACACGTCTCGAGTCGATTCGATCCCCGCTTGTGAATCGCCCTAGAGG
GGCCAGGGCTTTAGCTTTGGCTTTCAGCGAAGTTGCCCAAGGCGGATGTG
ATCCCAATGTCTGTTTTGCTTTGGACGGAAGTAAGGTTATTGATGCTGAC
AGTTTCAAACTACAGAAGGATTTTGTCAAACTCGTTGCAGGAGTGATTTC
TCTCGATGAGCAATCTCAGTTTGCTGCATTACAGTATGCAAGTACAACGT
CTATCATTAGCGATTTAACCGTAGACGCCAATGATTTTCTTCTCAAGGTT
GATGCAGCTGTTCAGGTTAAAGCTCCACGGACGTTCGTTGCTCAAGGACT
CTTTGGTTGTATGCTGCAATTGTTCAACACTCCTTTCGAAGCAAACCATA
TAGTGCTTCTCGGTGACGGTGCAGATAATGATATCAATCGTCTGTTCGCG
TCTGGAAGTTCTTTTATTGCCCAAAACTTCTTGCGCAACCCTAACAACCA
GATTTCGGCAGTTGCTGTTGGATTTGAGGATACTAGCGGTTTGGAACGTT
TAGTCGGGAGCCCGGACCGCGTTTTTACTGTAGATCAATGGTCGGAAGTT
TTGGATGTAACAGCAGAGCTTGTGGTTGACGTGTGTGGAATCGATGCTAT
TGAGTTCTGA

Coding sequence (CDS) from alignment at ScGOVlb_425:826895..827704+

>Gvermi12685.t1 ID=Gvermi12685.t1|Name=Gvermi12685.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=810bp|location=Sequence derived from alignment at ScGOVlb_425:826895..827704+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAGCTTAGCAGTTCTCATCTTTCTCTCTCTTGTTATTGTGGCGAG
TGCTCGAGATGCACTAGAGATTCCCGTCGCTCTTCCGTTCGGCGCGGGAA
GTTTGCCAATTTCAGTCGAGTCTCGTTTGAAATCTCGACTTGAATTCGCC
AAAACACGTCTCGAGTCGATTCGATCCCCGCTTGTGAATCGCCCTAGAGG
GGCCAGGGCTTTAGCTTTGGCTTTCAGCGAAGTTGCCCAAGGCGGATGTG
ATCCCAATGTCTGTTTTGCTTTGGACGGAAGTAAGGTTATTGATGCTGAC
AGTTTCAAACTACAGAAGGATTTTGTCAAACTCGTTGCAGGAGTGATTTC
TCTCGATGAGCAATCTCAGTTTGCTGCATTACAGTATGCAAGTACAACGT
CTATCATTAGCGATTTAACCGTAGACGCCAATGATTTTCTTCTCAAGGTT
GATGCAGCTGTTCAGGTTAAAGCTCCACGGACGTTCGTTGCTCAAGGACT
CTTTGGTTGTATGCTGCAATTGTTCAACACTCCTTTCGAAGCAAACCATA
TAGTGCTTCTCGGTGACGGTGCAGATAATGATATCAATCGTCTGTTCGCG
TCTGGAAGTTCTTTTATTGCCCAAAACTTCTTGCGCAACCCTAACAACCA
GATTTCGGCAGTTGCTGTTGGATTTGAGGATACTAGCGGTTTGGAACGTT
TAGTCGGGAGCCCGGACCGCGTTTTTACTGTAGATCAATGGTCGGAAGTT
TTGGATGTAACAGCAGAGCTTGTGGTTGACGTGTGTGGAATCGATGCTAT
TGAGTTCTGA