Gvermi12660.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12660.t1
Unique NameGvermi12660.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:132678..133949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_12962T0
Max annot lvl33154|Opisthokonta
Evalue1.12e-12
EggNOG OGs2E93I@1|root,2SFHA@2759|Eukaryota,3AV0X@33154|Opisthokonta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12660Gvermi12660Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 132678..133949 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12660.t1.start1Gvermi12660.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 132678..132680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12660.t1.CDS1Gvermi12660.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 132678..133949 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12660.t1.exon1Gvermi12660.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 132678..133949 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12660.t1.stop1Gvermi12660.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 133947..133949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12660.t1Gvermi12660.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 132678..133949 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12660.t1 ID=Gvermi12660.t1|Name=Gvermi12660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=424bp
MSIHQYLKPNIRSQYTPLQSHLEENGSLKLRRILLDNYIQFHQKQRLKAE
EAKTHYAVIRTLVYHGRSWRGLGDRLRGVIQAYLLAVATNRVLLIDWQYP
FPLTQVLNSESESGNFLFNSTVFAETHRKSNGRRDSIRLRNASFDHLEPF
KGNISTVHMMTNPKPEWRKFLKVLRKESASAVLSELQKMGVLKTQELPDV
VCSLIFRTIFQPSTLLKKKLEEIEQGTSTCFPCVLCRKDSVVSQIPQYIS
IHARLGTAIEQDAPKRFNLSEHELSLPDIAKCLAYHARETAKLMGLRYGN
YFLATDTEDMKNHLKKELTSCEGCKDDVKIMHSECSLKHVRDLDGNNQDD
FDIFMNTFVDLSMLAKGEALLSLPSGFADIAQWMGPINLHKRLTFEQCSM
EKKMRESRLDQIEASRDRTEVFL*
back to top

spliced messenger RNA

>Gvermi12660.t1 ID=Gvermi12660.t1|Name=Gvermi12660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at ScGOVlb_425:132678..133949+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATTCATCAATACCTTAAGCCAAATATTAGAAGCCAATATACCCC
TCTTCAGTCACACTTGGAGGAAAATGGAAGCTTGAAACTACGGAGAATAT
TACTGGACAATTATATTCAGTTCCACCAAAAACAAAGGCTAAAAGCTGAG
GAAGCAAAGACTCACTATGCCGTTATTCGAACTTTAGTATATCACGGAAG
GTCATGGCGAGGTCTTGGCGATCGACTCCGAGGAGTAATACAGGCATATT
TGCTGGCCGTGGCAACAAACAGGGTTTTATTAATAGATTGGCAATATCCT
TTTCCTCTCACCCAGGTGTTGAACTCGGAATCAGAGAGTGGGAATTTTTT
GTTCAACAGCACAGTATTTGCAGAAACCCACCGTAAAAGCAACGGAAGAA
GAGATTCTATACGTCTTCGAAACGCAAGCTTCGACCATCTGGAGCCTTTC
AAAGGCAACATCAGTACTGTGCATATGATGACGAATCCGAAACCAGAGTG
GAGAAAGTTTTTGAAAGTTTTGCGGAAGGAGTCCGCTTCGGCTGTTTTGT
CGGAACTTCAAAAGATGGGTGTCCTGAAAACCCAGGAGCTCCCGGATGTT
GTGTGTTCTTTAATTTTTCGAACCATTTTTCAACCCTCGACATTGCTCAA
GAAAAAACTAGAAGAGATTGAGCAAGGTACAAGCACTTGCTTTCCGTGTG
TTCTTTGTCGCAAAGACAGTGTTGTCTCTCAGATTCCTCAGTATATTTCA
ATTCATGCAAGACTTGGAACAGCAATTGAGCAAGATGCTCCAAAGCGCTT
CAATTTAAGCGAACATGAATTGAGCCTGCCTGACATTGCAAAATGTCTGG
CGTACCATGCCCGTGAAACCGCAAAGCTGATGGGGCTTCGCTATGGCAAC
TACTTTTTAGCAACTGACACGGAAGACATGAAGAATCATTTGAAGAAAGA
ACTCACTTCTTGCGAAGGGTGCAAAGACGACGTGAAAATCATGCACTCTG
AGTGCAGTCTAAAGCATGTGAGAGATTTAGATGGAAACAACCAAGATGAC
TTTGATATTTTCATGAACACATTTGTTGATCTGTCCATGCTTGCTAAAGG
GGAGGCATTGCTGAGTTTGCCATCTGGATTTGCTGACATAGCGCAGTGGA
TGGGTCCTATAAATCTTCATAAGAGGCTGACGTTCGAACAATGCTCTATG
GAAAAAAAAATGAGGGAATCAAGACTTGACCAAATTGAAGCATCGAGAGA
CAGGACTGAAGTGTTTCTTTGA
back to top

protein sequence of Gvermi12660.t1

>Gvermi12660.t1 ID=Gvermi12660.t1|Name=Gvermi12660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=424bp
MSIHQYLKPNIRSQYTPLQSHLEENGSLKLRRILLDNYIQFHQKQRLKAE
EAKTHYAVIRTLVYHGRSWRGLGDRLRGVIQAYLLAVATNRVLLIDWQYP
FPLTQVLNSESESGNFLFNSTVFAETHRKSNGRRDSIRLRNASFDHLEPF
KGNISTVHMMTNPKPEWRKFLKVLRKESASAVLSELQKMGVLKTQELPDV
VCSLIFRTIFQPSTLLKKKLEEIEQGTSTCFPCVLCRKDSVVSQIPQYIS
IHARLGTAIEQDAPKRFNLSEHELSLPDIAKCLAYHARETAKLMGLRYGN
YFLATDTEDMKNHLKKELTSCEGCKDDVKIMHSECSLKHVRDLDGNNQDD
FDIFMNTFVDLSMLAKGEALLSLPSGFADIAQWMGPINLHKRLTFEQCSM
EKKMRESRLDQIEASRDRTEVFL*
back to top

mRNA from alignment at ScGOVlb_425:132678..133949+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12660.t1 ID=Gvermi12660.t1|Name=Gvermi12660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at ScGOVlb_425:132678..133949+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCATTCATCAATACCTTAAGCCAAATATTAGAAGCCAATATACCCC
TCTTCAGTCACACTTGGAGGAAAATGGAAGCTTGAAACTACGGAGAATAT
TACTGGACAATTATATTCAGTTCCACCAAAAACAAAGGCTAAAAGCTGAG
GAAGCAAAGACTCACTATGCCGTTATTCGAACTTTAGTATATCACGGAAG
GTCATGGCGAGGTCTTGGCGATCGACTCCGAGGAGTAATACAGGCATATT
TGCTGGCCGTGGCAACAAACAGGGTTTTATTAATAGATTGGCAATATCCT
TTTCCTCTCACCCAGGTGTTGAACTCGGAATCAGAGAGTGGGAATTTTTT
GTTCAACAGCACAGTATTTGCAGAAACCCACCGTAAAAGCAACGGAAGAA
GAGATTCTATACGTCTTCGAAACGCAAGCTTCGACCATCTGGAGCCTTTC
AAAGGCAACATCAGTACTGTGCATATGATGACGAATCCGAAACCAGAGTG
GAGAAAGTTTTTGAAAGTTTTGCGGAAGGAGTCCGCTTCGGCTGTTTTGT
CGGAACTTCAAAAGATGGGTGTCCTGAAAACCCAGGAGCTCCCGGATGTT
GTGTGTTCTTTAATTTTTCGAACCATTTTTCAACCCTCGACATTGCTCAA
GAAAAAACTAGAAGAGATTGAGCAAGGTACAAGCACTTGCTTTCCGTGTG
TTCTTTGTCGCAAAGACAGTGTTGTCTCTCAGATTCCTCAGTATATTTCA
ATTCATGCAAGACTTGGAACAGCAATTGAGCAAGATGCTCCAAAGCGCTT
CAATTTAAGCGAACATGAATTGAGCCTGCCTGACATTGCAAAATGTCTGG
CGTACCATGCCCGTGAAACCGCAAAGCTGATGGGGCTTCGCTATGGCAAC
TACTTTTTAGCAACTGACACGGAAGACATGAAGAATCATTTGAAGAAAGA
ACTCACTTCTTGCGAAGGGTGCAAAGACGACGTGAAAATCATGCACTCTG
AGTGCAGTCTAAAGCATGTGAGAGATTTAGATGGAAACAACCAAGATGAC
TTTGATATTTTCATGAACACATTTGTTGATCTGTCCATGCTTGCTAAAGG
GGAGGCATTGCTGAGTTTGCCATCTGGATTTGCTGACATAGCGCAGTGGA
TGGGTCCTATAAATCTTCATAAGAGGCTGACGTTCGAACAATGCTCTATG
GAAAAAAAAATGAGGGAATCAAGACTTGACCAAATTGAAGCATCGAGAGA
CAGGACTGAAGTGTTTCTTTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:132678..133949+

>Gvermi12660.t1 ID=Gvermi12660.t1|Name=Gvermi12660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1272bp|location=Sequence derived from alignment at ScGOVlb_425:132678..133949+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCATTCATCAATACCTTAAGCCAAATATTAGAAGCCAATATACCCC
TCTTCAGTCACACTTGGAGGAAAATGGAAGCTTGAAACTACGGAGAATAT
TACTGGACAATTATATTCAGTTCCACCAAAAACAAAGGCTAAAAGCTGAG
GAAGCAAAGACTCACTATGCCGTTATTCGAACTTTAGTATATCACGGAAG
GTCATGGCGAGGTCTTGGCGATCGACTCCGAGGAGTAATACAGGCATATT
TGCTGGCCGTGGCAACAAACAGGGTTTTATTAATAGATTGGCAATATCCT
TTTCCTCTCACCCAGGTGTTGAACTCGGAATCAGAGAGTGGGAATTTTTT
GTTCAACAGCACAGTATTTGCAGAAACCCACCGTAAAAGCAACGGAAGAA
GAGATTCTATACGTCTTCGAAACGCAAGCTTCGACCATCTGGAGCCTTTC
AAAGGCAACATCAGTACTGTGCATATGATGACGAATCCGAAACCAGAGTG
GAGAAAGTTTTTGAAAGTTTTGCGGAAGGAGTCCGCTTCGGCTGTTTTGT
CGGAACTTCAAAAGATGGGTGTCCTGAAAACCCAGGAGCTCCCGGATGTT
GTGTGTTCTTTAATTTTTCGAACCATTTTTCAACCCTCGACATTGCTCAA
GAAAAAACTAGAAGAGATTGAGCAAGGTACAAGCACTTGCTTTCCGTGTG
TTCTTTGTCGCAAAGACAGTGTTGTCTCTCAGATTCCTCAGTATATTTCA
ATTCATGCAAGACTTGGAACAGCAATTGAGCAAGATGCTCCAAAGCGCTT
CAATTTAAGCGAACATGAATTGAGCCTGCCTGACATTGCAAAATGTCTGG
CGTACCATGCCCGTGAAACCGCAAAGCTGATGGGGCTTCGCTATGGCAAC
TACTTTTTAGCAACTGACACGGAAGACATGAAGAATCATTTGAAGAAAGA
ACTCACTTCTTGCGAAGGGTGCAAAGACGACGTGAAAATCATGCACTCTG
AGTGCAGTCTAAAGCATGTGAGAGATTTAGATGGAAACAACCAAGATGAC
TTTGATATTTTCATGAACACATTTGTTGATCTGTCCATGCTTGCTAAAGG
GGAGGCATTGCTGAGTTTGCCATCTGGATTTGCTGACATAGCGCAGTGGA
TGGGTCCTATAAATCTTCATAAGAGGCTGACGTTCGAACAATGCTCTATG
GAAAAAAAAATGAGGGAATCAAGACTTGACCAAATTGAAGCATCGAGAGA
CAGGACTGAAGTGTTTCTTTGA
back to top