Gvermi12762.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12762.t1
Unique NameGvermi12762.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1411435..1412172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps24560
PFAMsThioredoxin
Max annot lvl2836|Bacillariophyta
Evalue1.81e-16
EggNOG OGsCOG0526@1|root,KOG0190@2759|Eukaryota,2XH62@2836|Bacillariophyta
DescriptionThioredoxin
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12762Gvermi12762Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1411435..1412172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12762.t1Gvermi12762.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1411435..1412172 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12762.t1.stop1Gvermi12762.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1411435..1411437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12762.t1.CDS1Gvermi12762.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1411435..1411920 -
Gvermi12762.t1.CDS2Gvermi12762.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1412005..1412172 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12762.t1.exon1Gvermi12762.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1411435..1411920 -
Gvermi12762.t1.exon2Gvermi12762.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1412005..1412172 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12762.t1.intron1Gvermi12762.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1411921..1412004 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12762.t1.start1Gvermi12762.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1412170..1412172 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12762.t1 ID=Gvermi12762.t1|Name=Gvermi12762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=218bp
MARYALLPAAVLLLCAAAAHHAAADVLELSLLSLDHVIKSSSKPLLLQFY
SPSCHHCVRFQPAYEQVAKRLHTDANVARVDGVAHRALRLRFRVMAFPSF
FLIHAGSVFEFVGAHSSDDLIKFVQSNGTASGEKLSAVNGPLSAYWRLVH
LLFRLVNFLQVEFEQYRLNGGNIPLLIVAIVTGVLSAFMVAIYLITLPPK
PLSSQNRWRTPAREHND*
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spliced messenger RNA

>Gvermi12762.t1 ID=Gvermi12762.t1|Name=Gvermi12762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp|location=Sequence derived from alignment at ScGOVlb_425:1411435..1412172- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGGTACGCCCTTCTCCCCGCCGCGGTGCTTCTGCTCTGCGCCGC
CGCCGCGCACCACGCCGCTGCCGACGTGCTCGAGCTCTCGCTGCTGTCGC
TAGACCACGTAATTAAGTCCTCCTCCAAACCGTTGCTGCTGCAGTTCTAC
TCGCCCAGTTGTCACCACTGCGTTCGATTCCAGCCAGCGTACGAGCAGGT
GGCCAAGCGGCTGCACACGGACGCTAACGTAGCCAGGGTAGATGGCGTAG
CTCACCGCGCCCTGCGCCTGCGTTTCCGCGTCATGGCGTTCCCATCCTTC
TTCCTCATCCACGCCGGCTCCGTGTTCGAGTTTGTGGGCGCGCACTCCTC
CGACGACCTTATCAAGTTTGTGCAGTCCAACGGCACCGCGTCCGGCGAAA
AGCTCAGTGCCGTCAACGGGCCGCTCAGCGCATATTGGCGCCTCGTGCAT
CTGCTGTTCCGCTTGGTCAACTTCCTGCAGGTGGAGTTTGAACAGTACCG
GCTCAACGGCGGCAATATACCGCTGCTCATCGTTGCCATCGTCACCGGCG
TGCTGTCGGCGTTTATGGTCGCCATTTACCTTATCACACTGCCGCCCAAG
CCGCTTTCGTCGCAGAACCGATGGCGCACGCCCGCGCGCGAGCACAACGA
TTGA
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protein sequence of Gvermi12762.t1

>Gvermi12762.t1 ID=Gvermi12762.t1|Name=Gvermi12762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=218bp
MARYALLPAAVLLLCAAAAHHAAADVLELSLLSLDHVIKSSSKPLLLQFY
SPSCHHCVRFQPAYEQVAKRLHTDANVARVDGVAHRALRLRFRVMAFPSF
FLIHAGSVFEFVGAHSSDDLIKFVQSNGTASGEKLSAVNGPLSAYWRLVH
LLFRLVNFLQVEFEQYRLNGGNIPLLIVAIVTGVLSAFMVAIYLITLPPK
PLSSQNRWRTPAREHND*
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mRNA from alignment at ScGOVlb_425:1411435..1412172-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12762.t1 ID=Gvermi12762.t1|Name=Gvermi12762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=738bp|location=Sequence derived from alignment at ScGOVlb_425:1411435..1412172- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGAGGTACGCCCTTCTCCCCGCCGCGGTGCTTCTGCTCTGCGCCGC
CGCCGCGCACCACGCCGCTGCCGACGTGCTCGAGCTCTCGCTGCTGTCGC
TAGACCACGTAATTAAGTCCTCCTCCAAACCGTTGCTGCTGCAGTTCTAC
TCGCCCAGTTGTCACCACGTAAGTCCCTCCCCCGCCCTCCGCGCTAGTGC
CGCGCGCAGCTGATAACTGACGCTCGTCGCGCTCGCGTGCTTGACCCTGT
AGTGCGTTCGATTCCAGCCAGCGTACGAGCAGGTGGCCAAGCGGCTGCAC
ACGGACGCTAACGTAGCCAGGGTAGATGGCGTAGCTCACCGCGCCCTGCG
CCTGCGTTTCCGCGTCATGGCGTTCCCATCCTTCTTCCTCATCCACGCCG
GCTCCGTGTTCGAGTTTGTGGGCGCGCACTCCTCCGACGACCTTATCAAG
TTTGTGCAGTCCAACGGCACCGCGTCCGGCGAAAAGCTCAGTGCCGTCAA
CGGGCCGCTCAGCGCATATTGGCGCCTCGTGCATCTGCTGTTCCGCTTGG
TCAACTTCCTGCAGGTGGAGTTTGAACAGTACCGGCTCAACGGCGGCAAT
ATACCGCTGCTCATCGTTGCCATCGTCACCGGCGTGCTGTCGGCGTTTAT
GGTCGCCATTTACCTTATCACACTGCCGCCCAAGCCGCTTTCGTCGCAGA
ACCGATGGCGCACGCCCGCGCGCGAGCACAACGATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1411435..1412172-

>Gvermi12762.t1 ID=Gvermi12762.t1|Name=Gvermi12762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=654bp|location=Sequence derived from alignment at ScGOVlb_425:1411435..1412172- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGAGGTACGCCCTTCTCCCCGCCGCGGTGCTTCTGCTCTGCGCCGC
CGCCGCGCACCACGCCGCTGCCGACGTGCTCGAGCTCTCGCTGCTGTCGC
TAGACCACGTAATTAAGTCCTCCTCCAAACCGTTGCTGCTGCAGTTCTAC
TCGCCCAGTTGTCACCACTGCGTTCGATTCCAGCCAGCGTACGAGCAGGT
GGCCAAGCGGCTGCACACGGACGCTAACGTAGCCAGGGTAGATGGCGTAG
CTCACCGCGCCCTGCGCCTGCGTTTCCGCGTCATGGCGTTCCCATCCTTC
TTCCTCATCCACGCCGGCTCCGTGTTCGAGTTTGTGGGCGCGCACTCCTC
CGACGACCTTATCAAGTTTGTGCAGTCCAACGGCACCGCGTCCGGCGAAA
AGCTCAGTGCCGTCAACGGGCCGCTCAGCGCATATTGGCGCCTCGTGCAT
CTGCTGTTCCGCTTGGTCAACTTCCTGCAGGTGGAGTTTGAACAGTACCG
GCTCAACGGCGGCAATATACCGCTGCTCATCGTTGCCATCGTCACCGGCG
TGCTGTCGGCGTTTATGGTCGCCATTTACCTTATCACACTGCCGCCCAAG
CCGCTTTCGTCGCAGAACCGATGGCGCACGCCCGCGCGCGAGCACAACGA
TTGA
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