Gvermi12811.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12811.t1
Unique NameGvermi12811.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1613000..1613665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010670824.1
PFAMsGSHPx
Max annot lvl35493|Streptophyta
KEGG rclassRC00011,RC00982
KEGG koko:K00432
KEGG ReactionR00274,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04918,map00480,map00590,map04918
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035,GO:0080167
Evalue1.7e-27
EggNOG OGsCOG0386@1|root,KOG1651@2759|Eukaryota,37K04@33090|Viridiplantae,3G9CQ@35493|Streptophyta
EC1.11.1.9
DescriptionBelongs to the glutathione peroxidase family
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12811Gvermi12811Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1613000..1613665 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12811.t1.stop1Gvermi12811.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1613000..1613002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12811.t1.CDS1Gvermi12811.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1613000..1613665 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12811.t1.exon1Gvermi12811.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1613000..1613665 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12811.t1.start1Gvermi12811.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1613663..1613665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12811.t1Gvermi12811.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1613000..1613665 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12811.t1 ID=Gvermi12811.t1|Name=Gvermi12811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=222bp
MLSFVPSALALARRVLPAAAPRVAAAPRVAAARPRSALFGGALLSATLFA
TTPLAAAHADDGPSPTMTLSDLPPMKDIDGNPVSPQRFDGKVVFVMNVAS
ACGYTQAGYTLFKKLTDKYSPDQFLAVAIPCNSFGFQESGSSDQIKTFAL
QRADKLLIMERSNVNGSNQHPIIELAKSKFPAQISWNFDGRYVFDKSGEP
VARFGNSATDQQIEAAIDKAL*
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spliced messenger RNA

>Gvermi12811.t1 ID=Gvermi12811.t1|Name=Gvermi12811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1613000..1613665- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTCATTTGTCCCTTCCGCGCTGGCACTAGCACGCCGCGTGCTCCC
CGCCGCAGCACCGCGAGTGGCCGCAGCACCGCGAGTGGCCGCAGCGCGCC
CGCGCAGCGCCCTCTTTGGCGGCGCCTTGCTCTCCGCCACGCTGTTCGCC
ACCACCCCCCTTGCCGCCGCCCATGCCGACGACGGCCCCTCCCCCACCAT
GACGCTGTCCGATCTCCCCCCCATGAAGGACATCGACGGCAACCCGGTCT
CGCCGCAGCGCTTCGACGGCAAGGTTGTGTTCGTCATGAACGTGGCGTCG
GCGTGTGGTTACACGCAAGCCGGATACACGCTCTTCAAGAAACTCACGGA
CAAGTACTCGCCCGATCAATTCTTGGCCGTCGCCATTCCTTGCAACTCTT
TTGGCTTCCAGGAAAGCGGCTCTTCTGATCAGATCAAGACCTTTGCCCTG
CAGCGAGCCGACAAACTGCTAATCATGGAACGCTCGAACGTCAATGGCAG
CAACCAACACCCCATCATTGAGTTGGCCAAGTCCAAGTTCCCCGCCCAAA
TTTCCTGGAACTTTGATGGACGTTACGTATTTGACAAGTCCGGCGAGCCG
GTTGCCCGCTTTGGCAATTCCGCTACCGACCAACAAATCGAGGCCGCAAT
TGATAAGGCGCTTTGA
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protein sequence of Gvermi12811.t1

>Gvermi12811.t1 ID=Gvermi12811.t1|Name=Gvermi12811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=222bp
MLSFVPSALALARRVLPAAAPRVAAAPRVAAARPRSALFGGALLSATLFA
TTPLAAAHADDGPSPTMTLSDLPPMKDIDGNPVSPQRFDGKVVFVMNVAS
ACGYTQAGYTLFKKLTDKYSPDQFLAVAIPCNSFGFQESGSSDQIKTFAL
QRADKLLIMERSNVNGSNQHPIIELAKSKFPAQISWNFDGRYVFDKSGEP
VARFGNSATDQQIEAAIDKAL*
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mRNA from alignment at ScGOVlb_425:1613000..1613665-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12811.t1 ID=Gvermi12811.t1|Name=Gvermi12811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1613000..1613665- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGTCATTTGTCCCTTCCGCGCTGGCACTAGCACGCCGCGTGCTCCC
CGCCGCAGCACCGCGAGTGGCCGCAGCACCGCGAGTGGCCGCAGCGCGCC
CGCGCAGCGCCCTCTTTGGCGGCGCCTTGCTCTCCGCCACGCTGTTCGCC
ACCACCCCCCTTGCCGCCGCCCATGCCGACGACGGCCCCTCCCCCACCAT
GACGCTGTCCGATCTCCCCCCCATGAAGGACATCGACGGCAACCCGGTCT
CGCCGCAGCGCTTCGACGGCAAGGTTGTGTTCGTCATGAACGTGGCGTCG
GCGTGTGGTTACACGCAAGCCGGATACACGCTCTTCAAGAAACTCACGGA
CAAGTACTCGCCCGATCAATTCTTGGCCGTCGCCATTCCTTGCAACTCTT
TTGGCTTCCAGGAAAGCGGCTCTTCTGATCAGATCAAGACCTTTGCCCTG
CAGCGAGCCGACAAACTGCTAATCATGGAACGCTCGAACGTCAATGGCAG
CAACCAACACCCCATCATTGAGTTGGCCAAGTCCAAGTTCCCCGCCCAAA
TTTCCTGGAACTTTGATGGACGTTACGTATTTGACAAGTCCGGCGAGCCG
GTTGCCCGCTTTGGCAATTCCGCTACCGACCAACAAATCGAGGCCGCAAT
TGATAAGGCGCTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1613000..1613665-

>Gvermi12811.t1 ID=Gvermi12811.t1|Name=Gvermi12811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1613000..1613665- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGTCATTTGTCCCTTCCGCGCTGGCACTAGCACGCCGCGTGCTCCC
CGCCGCAGCACCGCGAGTGGCCGCAGCACCGCGAGTGGCCGCAGCGCGCC
CGCGCAGCGCCCTCTTTGGCGGCGCCTTGCTCTCCGCCACGCTGTTCGCC
ACCACCCCCCTTGCCGCCGCCCATGCCGACGACGGCCCCTCCCCCACCAT
GACGCTGTCCGATCTCCCCCCCATGAAGGACATCGACGGCAACCCGGTCT
CGCCGCAGCGCTTCGACGGCAAGGTTGTGTTCGTCATGAACGTGGCGTCG
GCGTGTGGTTACACGCAAGCCGGATACACGCTCTTCAAGAAACTCACGGA
CAAGTACTCGCCCGATCAATTCTTGGCCGTCGCCATTCCTTGCAACTCTT
TTGGCTTCCAGGAAAGCGGCTCTTCTGATCAGATCAAGACCTTTGCCCTG
CAGCGAGCCGACAAACTGCTAATCATGGAACGCTCGAACGTCAATGGCAG
CAACCAACACCCCATCATTGAGTTGGCCAAGTCCAAGTTCCCCGCCCAAA
TTTCCTGGAACTTTGATGGACGTTACGTATTTGACAAGTCCGGCGAGCCG
GTTGCCCGCTTTGGCAATTCCGCTACCGACCAACAAATCGAGGCCGCAAT
TGATAAGGCGCTTTGA
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