Gvermi12800.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12800.t1
Unique NameGvermi12800.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1546973..1548289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12800Gvermi12800Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1546973..1548289 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12800.t1.start1Gvermi12800.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1546973..1546975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12800.t1.CDS1Gvermi12800.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1546973..1548289 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12800.t1.exon1Gvermi12800.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1546973..1548289 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12800.t1.stop1Gvermi12800.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1548287..1548289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12800.t1Gvermi12800.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1546973..1548289 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12800.t1 ID=Gvermi12800.t1|Name=Gvermi12800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=439bp
MSRLLRDALKWRHRHLRRTLRNFVFRRTPQDPPRTLYTYDGPCLANAKRP
STVSLLRHHSKSALSHDLCARLTQPYVHSSSTNSLSSCTDREEQPPMSPP
DASRAVPASPGSITAQCAVPPLDERLLFCSSSSLPTVLSAEALSDPVTDS
APTSPRSTRSQSHLLNKLSTVRDDAARPFYLLERTEEQPLLNPSPSHSSH
SLPPACAQQPPQPASNEEHMQPPPECTQMHLQTPSDYLPAPVLPQQDDDD
ELKITAPIVPTYPEDRRETRTNTLSLFGTFVPPGLPRAALPTDTNAALAA
YAEDDQDEEGLGDIDLSAVDEDAPSLQPQSHTQLPAMHMDAETCQWVGNE
QEFAHFDSIVAAVPEDPAEQPQRDAVFDVSESLLEQWRQDGEQHNRQFAV
GYQDNGAADIRDMISLFATGQSQPPHEGEREHEHEHEH*
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spliced messenger RNA

>Gvermi12800.t1 ID=Gvermi12800.t1|Name=Gvermi12800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at ScGOVlb_425:1546973..1548289+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCGTCTGTTGCGCGACGCCCTCAAATGGCGCCATCGCCACCTTCG
GCGCACGCTGCGCAACTTCGTCTTCCGCCGAACTCCACAAGACCCTCCTC
GCACTCTCTACACCTATGACGGCCCCTGTCTGGCGAACGCCAAGCGCCCG
TCAACCGTCTCCCTTCTTCGCCATCACTCAAAATCCGCCCTCTCCCACGA
CCTCTGCGCCCGCCTCACGCAGCCGTACGTGCACTCATCTTCTACCAACT
CGCTTTCCTCATGCACCGATCGCGAAGAACAACCCCCAATGTCGCCGCCC
GATGCATCACGTGCCGTCCCCGCTTCGCCCGGCTCCATTACCGCCCAGTG
CGCCGTGCCTCCACTTGATGAGCGTCTCCTCTTCTGTTCCTCCAGCTCGC
TGCCAACCGTGCTGTCCGCCGAGGCCCTGTCTGACCCCGTCACAGATTCC
GCCCCCACCAGCCCTCGCTCTACTCGCTCCCAGTCGCACCTGTTAAACAA
GCTGTCAACCGTTCGCGATGATGCCGCTCGCCCTTTCTATCTTCTAGAGC
GCACTGAGGAACAGCCTCTTCTGAACCCCTCCCCGTCACACTCGAGTCAC
TCTTTGCCGCCTGCATGCGCTCAACAACCCCCGCAGCCTGCGAGCAACGA
GGAGCATATGCAGCCGCCGCCCGAATGCACCCAAATGCATCTACAGACAC
CGTCGGATTACCTCCCGGCACCCGTTTTGCCTCAACAAGATGACGACGAC
GAGCTCAAAATCACCGCGCCCATTGTCCCCACTTATCCTGAAGACAGACG
CGAGACACGCACCAACACACTTTCCCTGTTTGGTACTTTTGTCCCGCCTG
GACTACCGCGCGCCGCTTTGCCAACGGACACCAATGCCGCCCTGGCCGCG
TATGCGGAGGATGATCAGGACGAGGAAGGACTGGGCGATATAGACTTGTC
GGCCGTTGACGAAGACGCCCCTTCGCTGCAACCGCAAAGTCATACACAGC
TTCCTGCTATGCACATGGACGCTGAAACTTGTCAGTGGGTTGGGAACGAG
CAAGAATTTGCCCACTTTGACAGTATTGTCGCCGCTGTGCCCGAAGACCC
GGCTGAGCAACCACAGCGAGACGCCGTATTTGACGTCAGTGAGAGCCTTC
TGGAACAATGGCGACAGGACGGCGAGCAGCACAATCGCCAGTTTGCAGTC
GGCTATCAAGATAACGGTGCTGCAGACATTCGGGACATGATCAGCCTCTT
TGCTACAGGCCAATCTCAACCACCGCACGAGGGcgagcgcgagcacgagc
acgagcacgagcactag
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protein sequence of Gvermi12800.t1

>Gvermi12800.t1 ID=Gvermi12800.t1|Name=Gvermi12800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=439bp
MSRLLRDALKWRHRHLRRTLRNFVFRRTPQDPPRTLYTYDGPCLANAKRP
STVSLLRHHSKSALSHDLCARLTQPYVHSSSTNSLSSCTDREEQPPMSPP
DASRAVPASPGSITAQCAVPPLDERLLFCSSSSLPTVLSAEALSDPVTDS
APTSPRSTRSQSHLLNKLSTVRDDAARPFYLLERTEEQPLLNPSPSHSSH
SLPPACAQQPPQPASNEEHMQPPPECTQMHLQTPSDYLPAPVLPQQDDDD
ELKITAPIVPTYPEDRRETRTNTLSLFGTFVPPGLPRAALPTDTNAALAA
YAEDDQDEEGLGDIDLSAVDEDAPSLQPQSHTQLPAMHMDAETCQWVGNE
QEFAHFDSIVAAVPEDPAEQPQRDAVFDVSESLLEQWRQDGEQHNRQFAV
GYQDNGAADIRDMISLFATGQSQPPHEGEREHEHEHEH*
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mRNA from alignment at ScGOVlb_425:1546973..1548289+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12800.t1 ID=Gvermi12800.t1|Name=Gvermi12800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at ScGOVlb_425:1546973..1548289+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCGTCTGTTGCGCGACGCCCTCAAATGGCGCCATCGCCACCTTCG
GCGCACGCTGCGCAACTTCGTCTTCCGCCGAACTCCACAAGACCCTCCTC
GCACTCTCTACACCTATGACGGCCCCTGTCTGGCGAACGCCAAGCGCCCG
TCAACCGTCTCCCTTCTTCGCCATCACTCAAAATCCGCCCTCTCCCACGA
CCTCTGCGCCCGCCTCACGCAGCCGTACGTGCACTCATCTTCTACCAACT
CGCTTTCCTCATGCACCGATCGCGAAGAACAACCCCCAATGTCGCCGCCC
GATGCATCACGTGCCGTCCCCGCTTCGCCCGGCTCCATTACCGCCCAGTG
CGCCGTGCCTCCACTTGATGAGCGTCTCCTCTTCTGTTCCTCCAGCTCGC
TGCCAACCGTGCTGTCCGCCGAGGCCCTGTCTGACCCCGTCACAGATTCC
GCCCCCACCAGCCCTCGCTCTACTCGCTCCCAGTCGCACCTGTTAAACAA
GCTGTCAACCGTTCGCGATGATGCCGCTCGCCCTTTCTATCTTCTAGAGC
GCACTGAGGAACAGCCTCTTCTGAACCCCTCCCCGTCACACTCGAGTCAC
TCTTTGCCGCCTGCATGCGCTCAACAACCCCCGCAGCCTGCGAGCAACGA
GGAGCATATGCAGCCGCCGCCCGAATGCACCCAAATGCATCTACAGACAC
CGTCGGATTACCTCCCGGCACCCGTTTTGCCTCAACAAGATGACGACGAC
GAGCTCAAAATCACCGCGCCCATTGTCCCCACTTATCCTGAAGACAGACG
CGAGACACGCACCAACACACTTTCCCTGTTTGGTACTTTTGTCCCGCCTG
GACTACCGCGCGCCGCTTTGCCAACGGACACCAATGCCGCCCTGGCCGCG
TATGCGGAGGATGATCAGGACGAGGAAGGACTGGGCGATATAGACTTGTC
GGCCGTTGACGAAGACGCCCCTTCGCTGCAACCGCAAAGTCATACACAGC
TTCCTGCTATGCACATGGACGCTGAAACTTGTCAGTGGGTTGGGAACGAG
CAAGAATTTGCCCACTTTGACAGTATTGTCGCCGCTGTGCCCGAAGACCC
GGCTGAGCAACCACAGCGAGACGCCGTATTTGACGTCAGTGAGAGCCTTC
TGGAACAATGGCGACAGGACGGCGAGCAGCACAATCGCCAGTTTGCAGTC
GGCTATCAAGATAACGGTGCTGCAGACATTCGGGACATGATCAGCCTCTT
TGCTACAGGCCAATCTCAACCACCGCACGAGGGcgagcgcgagcacgagc
acgagcacgagcactag
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Coding sequence (CDS) from alignment at ScGOVlb_425:1546973..1548289+

>Gvermi12800.t1 ID=Gvermi12800.t1|Name=Gvermi12800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1317bp|location=Sequence derived from alignment at ScGOVlb_425:1546973..1548289+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCGTCTGTTGCGCGACGCCCTCAAATGGCGCCATCGCCACCTTCG
GCGCACGCTGCGCAACTTCGTCTTCCGCCGAACTCCACAAGACCCTCCTC
GCACTCTCTACACCTATGACGGCCCCTGTCTGGCGAACGCCAAGCGCCCG
TCAACCGTCTCCCTTCTTCGCCATCACTCAAAATCCGCCCTCTCCCACGA
CCTCTGCGCCCGCCTCACGCAGCCGTACGTGCACTCATCTTCTACCAACT
CGCTTTCCTCATGCACCGATCGCGAAGAACAACCCCCAATGTCGCCGCCC
GATGCATCACGTGCCGTCCCCGCTTCGCCCGGCTCCATTACCGCCCAGTG
CGCCGTGCCTCCACTTGATGAGCGTCTCCTCTTCTGTTCCTCCAGCTCGC
TGCCAACCGTGCTGTCCGCCGAGGCCCTGTCTGACCCCGTCACAGATTCC
GCCCCCACCAGCCCTCGCTCTACTCGCTCCCAGTCGCACCTGTTAAACAA
GCTGTCAACCGTTCGCGATGATGCCGCTCGCCCTTTCTATCTTCTAGAGC
GCACTGAGGAACAGCCTCTTCTGAACCCCTCCCCGTCACACTCGAGTCAC
TCTTTGCCGCCTGCATGCGCTCAACAACCCCCGCAGCCTGCGAGCAACGA
GGAGCATATGCAGCCGCCGCCCGAATGCACCCAAATGCATCTACAGACAC
CGTCGGATTACCTCCCGGCACCCGTTTTGCCTCAACAAGATGACGACGAC
GAGCTCAAAATCACCGCGCCCATTGTCCCCACTTATCCTGAAGACAGACG
CGAGACACGCACCAACACACTTTCCCTGTTTGGTACTTTTGTCCCGCCTG
GACTACCGCGCGCCGCTTTGCCAACGGACACCAATGCCGCCCTGGCCGCG
TATGCGGAGGATGATCAGGACGAGGAAGGACTGGGCGATATAGACTTGTC
GGCCGTTGACGAAGACGCCCCTTCGCTGCAACCGCAAAGTCATACACAGC
TTCCTGCTATGCACATGGACGCTGAAACTTGTCAGTGGGTTGGGAACGAG
CAAGAATTTGCCCACTTTGACAGTATTGTCGCCGCTGTGCCCGAAGACCC
GGCTGAGCAACCACAGCGAGACGCCGTATTTGACGTCAGTGAGAGCCTTC
TGGAACAATGGCGACAGGACGGCGAGCAGCACAATCGCCAGTTTGCAGTC
GGCTATCAAGATAACGGTGCTGCAGACATTCGGGACATGATCAGCCTCTT
TGCTACAGGCCAATCTCAACCACCGCACGAGGGcgagcgcgagcacgagc
acgagcacgagcactag
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