Gvermi12851.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12851.t1
Unique NameGvermi12851.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length254
Homology
BLAST of Gvermi12851.t1 vs. uniprot
Match: R7QLS7_CHOCR (Uncharacterized protein (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLS7_CHOCR)

HSP 1 Score: 191 bits (484), Expect = 4.870e-56
Identity = 105/229 (45.85%), Postives = 134/229 (58.52%), Query Frame = 0
Query:   26 LVQLVQAASLHDLHLDTTYCSPQYAFPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNLRIYASKRKREMLALLHM-PHMAARLVDDPTRARVHLVSMRELTPPSLRNYVRHNALSDKFIGRGLAVCFRPTGWTFNGAAVRRHVRPADNAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHMKQLLGHSDRPLCQPTFIPPP 253
            + ++V    L  LHLDTTYC+PQY FP Q  VL   +H A +E+RRTK  CLFFF TYSIGKEK+F  VA  LNL+IYA KRKR +L        +  RLV+    ARV +VSMR L+   LR Y   N+L+  FIGRGLA+ FRPTGWTF G A +                       +L  FV+W KP R++P V A + E    ++ LLGH+D PL + + +P P
Sbjct:  105 IAEVVSEGKLDYLHLDTTYCNPQYVFPYQANVLQQVVHAAKEENRRTKGQCLFFFGTYSIGKEKVFFAVAEALNLKIYAGKRKRGILEQCAFGAKLTGRLVNSAGEARVQVVSMRALSADGLREYAVRNSLNTSFIGRGLAIVFRPTGWTFRGDASKPR---------------------QLVAFVKWCKPARVVPTVNARSKEDADKLRALLGHTDTPLRRISSLPLP 312          
BLAST of Gvermi12851.t1 vs. uniprot
Match: A0A2V3J019_9FLOR (DNA cross-link repair 1A protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J019_9FLOR)

HSP 1 Score: 151 bits (382), Expect = 3.110e-43
Identity = 71/116 (61.21%), Postives = 85/116 (73.28%), Query Frame = 0
Query:  138 MRELTPPSLRNYVRHNALSDKFIGRGLAVCFRPTGWTFNGA-AVRRHVRPADNAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHMKQLLGHSDRPLCQPTFIPP 252
            M  L PP+LR Y++ N+LS +FIGR L VCFRPTGWTFN + +  R VRP DNAV+FQLPYSEH SF EL +FV+W KP RLIPMVGA +PEK + MK +L H DRPL   +   P
Sbjct:    1 MNALNPPALREYLKRNSLSQRFIGRALIVCFRPTGWTFNASRSSARSVRPHDNAVMFQLPYSEHSSFDELCKFVKWLKPRRLIPMVGARSPEKSEQMKSMLAHRDRPLADQSAAAP 116          
BLAST of Gvermi12851.t1 vs. uniprot
Match: UPI0019ACBC0D (DNA cross-link repair 1A protein n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019ACBC0D)

HSP 1 Score: 150 bits (378), Expect = 1.400e-37
Identity = 86/230 (37.39%), Postives = 131/230 (56.96%), Query Frame = 0
Query:    7 VLHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYAFPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNLRIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYV-RHNALSDKFIGRGLAVCFRPTGWTFNGAAVRRHVRPA--DNAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHM 233
            VLHTGDFR H P  +R+  L    Q+  +  L+LDTTYCSP+YAFP Q  V+  A + A +      R  L    TYS+GKEK+FL ++  L  ++Y SK + + +  L   H+   +  D   A++H++ M +L   +L+ Y+ R +A  D+       V F+PTGWTF       +++P   +N  ++ +PYSEH SF EL+RFV+W +P ++IP V   +   R+ M
Sbjct:  719 VLHTGDFRAH-PSMERYPEL----QSIRIQTLYLDTTYCSPEYAFPTQQEVITYAANTAFEVVTLNPRT-LIVCGTYSVGKEKVFLAISQVLGSKVYMSKERYKTMCCLESEHICQCITTDVKAAQIHVLPMMQLNFKNLKTYLKRFSATYDQL------VAFKPTGWTFTQEVGLENIQPQIKENISIYGIPYSEHSSFLELKRFVQWLQPLKIIPTVNVGSWSNRKAM 936          
BLAST of Gvermi12851.t1 vs. uniprot
Match: UPI00147E1BEB (LOW QUALITY PROTEIN: DNA cross-link repair 1A protein n=2 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=UPI00147E1BEB)

HSP 1 Score: 148 bits (374), Expect = 4.790e-37
Identity = 84/230 (36.52%), Postives = 129/230 (56.09%), Query Frame = 0
Query:    7 VLHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYAFPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNLRIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYVRHNALSDKFIGR-GLAVCFRPTGWTFNGAAVRRHVRPA--DNAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHM 233
            VLHTGDFR H    +     +  +Q   +  L+LDTTYCSP+YAFP Q  V+  A + A +      R  L    TYS+GKEK+FL ++  L+ ++Y SK + + +  L   H+   +  D   AR+H++ M ++   +L+ Y+      +KF G     V F+PTGWTF+      H++P   DN  ++ +PYSEH S+ EL+RFV+W +P ++IP V   +   R+ M
Sbjct:  720 VLHTGDFRAHPSXME-----LPELQGVRIQTLYLDTTYCSPEYAFPTQQEVITFAANTAFELVTLNPRT-LIVCGTYSVGKEKVFLAISQVLDSKVYMSKDRYKTMCCLESEHIYQCITTDMKAARIHVLPMMQINFKNLKTYL------NKFSGTYDQLVAFKPTGWTFSQEVGVAHIQPQVKDNISIYGIPYSEHSSYLELKRFVQWLRPLKIIPTVNVGSWSSRKAM 937          
BLAST of Gvermi12851.t1 vs. uniprot
Match: UPI001C07F300 (DNA cross-link repair 1A protein n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C07F300)

HSP 1 Score: 147 bits (371), Expect = 1.210e-36
Identity = 89/243 (36.63%), Postives = 132/243 (54.32%), Query Frame = 0
Query:    1 LHTKRWVLHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYAFPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNLRIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYVRHNALSDKFIGRGLAVCFRPTGWTFNGAAVRRHVRPAD--NAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHMKQLLGHSD 241
            L T + VLHTGDFR   P  +R+  L    Q   +  L+LDTTYCSP+Y FP Q  V+  A + A +    + R  L    TYS+GKEK+FL VA  L  ++  S+ K   +  L    +   +  D   A+VH++ M +L   +L+ Y++    SDK+      V F+PTGWTFN  +   H++P    N  ++ +PYSEH  + EL+RFV+W +P ++IP V   +   R+ M+Q     D
Sbjct:  740 LLTGQKVLHTGDFRAD-PSMERYPEL----QGFRVQTLYLDTTYCSPEYTFPTQQEVITFAANRAFEAVTLSPRT-LVVCGTYSVGKEKVFLAVADVLACKVCLSRDKYNTMCCLESDQIRQSITTDGKAAQVHVLPMMQLNFKNLQTYLKR--FSDKY---DQLVAFKPTGWTFNQGSALEHLQPQTQGNITIYGIPYSEHSGYLELKRFVQWLRPQKIIPTVNVGSWRSRKAMEQCFTEWD 971          
BLAST of Gvermi12851.t1 vs. uniprot
Match: B3S8X5_TRIAD (DRMBL domain-containing protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3S8X5_TRIAD)

HSP 1 Score: 142 bits (357), Expect = 1.560e-36
Identity = 84/231 (36.36%), Postives = 128/231 (55.41%), Query Frame = 0
Query:    8 LHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYAFPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNLRIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYVRHNALSDKFIGRGLAVCFRPTGWTFNGAAVRRHV--RPADNAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHMKQL 236
            LHTGDFR  +   ++    + +++ + + +L+LDTTYC P Y FP Q  VL   L       +  KR CL    TY+IGKEK+FL +A  L  ++YA K K   L  L + +       DP    +H++ +  ++   LRNY+  NA  D+F     A+ F+PTGWT         +  R   +  ++ +PYSEH S++E+RRFV++TKP ++IP V   +PEKR+ M  +
Sbjct:  150 LHTGDFRA-SEEMEK----LDILKNSVISELYLDTTYCDPSYDFPSQKFVLDYVLATVTDALKCNKR-CLVACGTYTIGKEKVFLAIARALECKVYAQKNKLGTLQCLEIENFKTLFTSDPHSTFLHVLPIWSVSAKFLRNYLDQNA--DQF---DCAIGFKPTGWTHTNNVTASGIVARQYGSISIYGVPYSEHSSYSEMRRFVQFTKPRKIIPTVNVGSPEKRREMNMI 369          
BLAST of Gvermi12851.t1 vs. uniprot
Match: A0A7J6AQI9_AMEME (UBZ4-type domain-containing protein n=4 Tax=Ictaluridae TaxID=7996 RepID=A0A7J6AQI9_AMEME)

HSP 1 Score: 146 bits (369), Expect = 2.230e-36
Identity = 87/230 (37.83%), Postives = 128/230 (55.65%), Query Frame = 0
Query:    7 VLHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYAFPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNLRIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYVRHNALSDKFIGR-GLAVCFRPTGWTFNGAAVRRHVRPA--DNAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHM 233
            VLHTGDFR H P  +R+  L    Q   +  L+LDTTYCSP+YAFP Q  V+  A + A +      R  L    TYS+GKEK+FL ++  L  ++Y SK + + +  L   H+   +  D   A++H++ M +L   +L+ Y+       KF G     V F+PTGWTF       +++P   DN  V+ +PYSEH S+ EL+RFV+W +P ++IP V   +   R+ M
Sbjct:  720 VLHTGDFRAH-PSMERYPEL----QGDKIQTLYLDTTYCSPEYAFPTQQEVITFAANTAFELVTLNPRT-LIVCGTYSVGKEKVFLAISQVLGSKVYMSKDRYKTMCCLESEHIYKCITTDVKAAQIHVLPMMQLNFKNLKTYL------SKFSGTYDQLVAFKPTGWTFTQEVGVDNIQPQIKDNISVYGIPYSEHSSYLELKRFVQWLRPLKIIPTVNVGSWSSRKAM 937          
BLAST of Gvermi12851.t1 vs. uniprot
Match: UPI0003F072AB (DNA cross-link repair 1A protein n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F072AB)

HSP 1 Score: 146 bits (369), Expect = 2.280e-36
Identity = 89/233 (38.20%), Postives = 134/233 (57.51%), Query Frame = 0
Query:    7 VLHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYAFPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNLRIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYV-RHNALSDKFIGRGLAVCFRPTGWTFNGAAVR-RHVRPA--DNAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHMKQ 235
            +LHTGDFR   P  +R      L+ +  +H L+LDTTYCSP+Y+FP Q +V+  A++ A +      R  L    TYSIGKEK+FL +A  L  ++  S+ K   L  L++P M A +  D +RA VHL+ M ++    L+ Y+ +H+   ++ +       FRPTGWT +   +R   + P    N  ++ +PYSEH SF E++RFV+W KP ++IP V   T + R  M+Q
Sbjct:  812 MLHTGDFRAD-PSMER-----SLLASRKVHTLYLDTTYCSPEYSFPSQQQVIQFAINTAFEAVTLNPRT-LVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKFMTLRCLNIPEMNALITTDMSRAFVHLLPMMQINFKGLQKYLQKHDGKYNQILA------FRPTGWTHSNTLMRISDIVPQRKGNISIYGIPYSEHSSFLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEQ 1031          
BLAST of Gvermi12851.t1 vs. uniprot
Match: A0A1S2ZIY8_ERIEU (DNA cross-link repair 1A protein n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S2ZIY8_ERIEU)

HSP 1 Score: 145 bits (366), Expect = 5.710e-36
Identity = 88/232 (37.93%), Postives = 134/232 (57.76%), Query Frame = 0
Query:    7 VLHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYAFPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNLRIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYVRHNALSDKFIGR-GLAVCFRPTGWTFNGAAVR-RHVRPAD--NAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHMK 234
            +LHTGDFR   P  +R      ++    +H L+LDTTYCSP Y FP Q  V+  A++ A +   R  R  L    TYSIGKEK+FL +A  L  ++  ++ K + L  L++P M + +  D   ++VHL+SM ++   SL+++++      K+ G+    + FRPTGWT +  +V    V P    N  ++ +PYSEH S+ EL+RFV+W KP ++IP V   T E R+ M+
Sbjct:  796 ILHTGDFRAD-PTMER-----SVLSGLKIHALYLDTTYCSPVYTFPSQQEVIQFAINTAFEAVTRNPRT-LVVCGTYSIGKEKVFLAIADILGSKVGMTQEKYKTLRCLNIPEMNSLITTDMNSSQVHLLSMMQINIKSLQSHLK------KYGGKYDQVLAFRPTGWTHSNKSVSLADVIPQTKGNVSIYGIPYSEHSSYTELKRFVQWLKPQKIIPTVNIGTIESRKTME 1014          
BLAST of Gvermi12851.t1 vs. uniprot
Match: A0A5N5ML07_PANHP (DRMBL domain-containing protein n=1 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5ML07_PANHP)

HSP 1 Score: 137 bits (344), Expect = 1.120e-35
Identity = 75/207 (36.23%), Postives = 118/207 (57.00%), Query Frame = 0
Query:   30 VQAASLHDLHLDTTYCSPQYAFPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNLRIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYVRHNALSDKFIGR-GLAVCFRPTGWTFNGAAVRRHVRPA--DNAVVFQLPYSEHCSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHM 233
            +Q   +  L+LDTTYCSP+YAFP Q  V+  A + A +      R  L    TYS+GKEK+FL ++  L+ ++Y SK + + +  L   H+   +  D   AR+H++ M ++   +L+ Y+      +KF G     V F+PTGWTF+      H++P   DN  ++ +PYSEH S+ EL+RFV+W +P ++IP V   +   R+ M
Sbjct:   38 LQGVRIQTLYLDTTYCSPEYAFPTQQEVITFAANTAFELVTLNPRT-LIVCGTYSVGKEKVFLAISQVLDSKVYMSKDRYKTMCCLESEHIYQCITTDMKAARIHVLPMMQINFKNLKTYL------NKFSGTYDQLVAFKPTGWTFSQEVGVAHIQPQVKDNISIYGIPYSEHSSYLELKRFVQWLRPLKIIPTVNVGSWSSRKAM 237          
The following BLAST results are available for this feature:
BLAST of Gvermi12851.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QLS7_CHOCR4.870e-5645.85Uncharacterized protein (Fragment) n=1 Tax=Chondru... [more]
A0A2V3J019_9FLOR3.110e-4361.21DNA cross-link repair 1A protein n=1 Tax=Gracilari... [more]
UPI0019ACBC0D1.400e-3737.39DNA cross-link repair 1A protein n=1 Tax=Silurus m... [more]
UPI00147E1BEB4.790e-3736.52LOW QUALITY PROTEIN: DNA cross-link repair 1A prot... [more]
UPI001C07F3001.210e-3636.63DNA cross-link repair 1A protein n=1 Tax=Alosa sap... [more]
B3S8X5_TRIAD1.560e-3636.36DRMBL domain-containing protein n=1 Tax=Trichoplax... [more]
A0A7J6AQI9_AMEME2.230e-3637.83UBZ4-type domain-containing protein n=4 Tax=Ictalu... [more]
UPI0003F072AB2.280e-3638.20DNA cross-link repair 1A protein n=1 Tax=Elephantu... [more]
A0A1S2ZIY8_ERIEU5.710e-3637.93DNA cross-link repair 1A protein n=1 Tax=Erinaceus... [more]
A0A5N5ML07_PANHP1.120e-3536.23DRMBL domain-containing protein n=1 Tax=Pangasiano... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011084DNA repair metallo-beta-lactamasePFAMPF07522DRMBLcoord: 119..222
e-value: 9.7E-20
score: 70.9
NoneNo IPR availableGENE3D3.40.50.12650coord: 50..200
e-value: 2.0E-36
score: 127.3
NoneNo IPR availablePANTHERPTHR23240DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATEDcoord: 4..236
NoneNo IPR availablePANTHERPTHR23240:SF6DNA CROSS-LINK REPAIR 1A PROTEINcoord: 4..236
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeSUPERFAMILY56281Metallo-hydrolase/oxidoreductasecoord: 5..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1801149..1801910 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12851.t1Gvermi12851.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1801149..1801910 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12851.t1 ID=Gvermi12851.t1|Name=Gvermi12851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=254bp
LHTKRWVLHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYA
FPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNL
RIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYV
RHNALSDKFIGRGLAVCFRPTGWTFNGAAVRRHVRPADNAVVFQLPYSEH
CSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHMKQLLGHSDRPLCQPTFI
PPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011084DRMBL
IPR036866RibonucZ/Hydroxyglut_hydro