Gvermi12738.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12738.t1
Unique NameGvermi12738.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1288839..1289765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3880.AES74705
PFAMsADH_N,ADH_zinc_N,ADH_zinc_N_2
Max annot lvl35493|Streptophyta
KEGG koko:K18980
Evalue3.93e-57
EggNOG OGsCOG0604@1|root,KOG1198@2759|Eukaryota,37YZD@33090|Viridiplantae,3GEJQ@35493|Streptophyta,4JTFK@91835|fabids
EC1.3.1.105
Description2-methylene-furan-3-one reductase-like
COG categoryC
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12738Gvermi12738Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1288839..1289765 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12738.t1.start1Gvermi12738.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1288839..1288841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12738.t1.CDS1Gvermi12738.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1288839..1289765 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12738.t1.exon1Gvermi12738.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1288839..1289765 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12738.t1.stop1Gvermi12738.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1289763..1289765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12738.t1Gvermi12738.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1288839..1289765 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12738.t1 ID=Gvermi12738.t1|Name=Gvermi12738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=309bp
MGSPTIPATMKALLQYDKHGAANFRIAQVDTPKPQPHQVLIRVHAASLNP
IDIKRGLMVEDKYPITVGYDVAGVVAAVGDSVSNVAVGDRVFGDIMRDSA
GQKFSGTVAEYCVCPADILAVIPNNVSFEQAAAVPVAVLTTIEAMETMGV
KPGDNVFISGGAGGVGVHAMQLAKNVYEASQVATTASLAKFDFVKKHGAD
VVVNYREEDVGEKLKGWADVVMDCVGEVEAGEKVMKDGGKMLTIVTMGSR
FMMLTPTTKLITSLANMLAAGKFTVVLDSVHPFSKVDDALAKLSSGRAMG
KIVVKVVE*
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spliced messenger RNA

>Gvermi12738.t1 ID=Gvermi12738.t1|Name=Gvermi12738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=927bp|location=Sequence derived from alignment at ScGOVlb_425:1288839..1289765+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTCCCCAACCATTCCCGCCACCATGAAAGCACTGCTTCAATACGA
TAAGCACGGCGCCGCCAACTTCCGCATCGCTCAAGTTGACACCCCAAAGC
CACAGCCGCACCAAGTGTTAATCCGCGTTCACGCCGCCTCCCTCAACCCC
ATCGACATCAAGCGCGGCTTAATGGTCGAAGACAAATATCCCATAACGGT
CGGTTACGACGTGGCCGGCGTCGTGGCCGCTGTGGGAGACTCAGTCTCAA
ACGTTGCTGTGGGAGATCGCGTTTTTGGGGACATCATGCGCGATAGTGCA
GGCCAAAAGTTCTCGGGCACCGTCGCGGAGTACTGCGTGTGCCCGGCCGA
CATCCTCGCCGTCATCCCGAACAACGTCTCCTTTGAGCAGGCCGCCGCCG
TGCCCGTGGCCGTGCTCACTACCATCGAGGCCATGGAAACAATGGGCGTC
AAGCCTGGCGATAACGTTTTTATCAGCGGCGGCGCTGGTGGTGTCGGTGT
GCACGCCATGCAGCTCGCGAAGAATGTGTACGAAGCGAGCCAAGTCGCCA
CCACCGCCTCGCTCGCGAAGTTTGACTTTGTCAAGAAGCACGGCGCGGAC
GTTGTGGTGAACTACAGGGAGGAAGATGTCGGTGAGAAACTGAAAGGGTG
GGCCGATGTTGTGATGGACTGCGTTGGTGAGGTGGAAGCTGGAGAAAAGG
TCATGAAAGACGGCGGCAAAATGCTCACCATCGTTACGATGGGGTCACGC
TTCATGATGCTGACACCGACCACTAAACTGATTACAAGCCTGGCCAACAT
GCTGGCCGCTGGAAAGTTCACCGTCGTGCTGGACTCCGTGCATCCGTTTT
CTAAAGTGGACGATGCCTTGGCCAAGCTTTCTAGCGGCAGGGCGATGGGC
AAGATAGTGGTCAAAGTTGTAGAATGA
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protein sequence of Gvermi12738.t1

>Gvermi12738.t1 ID=Gvermi12738.t1|Name=Gvermi12738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=309bp
MGSPTIPATMKALLQYDKHGAANFRIAQVDTPKPQPHQVLIRVHAASLNP
IDIKRGLMVEDKYPITVGYDVAGVVAAVGDSVSNVAVGDRVFGDIMRDSA
GQKFSGTVAEYCVCPADILAVIPNNVSFEQAAAVPVAVLTTIEAMETMGV
KPGDNVFISGGAGGVGVHAMQLAKNVYEASQVATTASLAKFDFVKKHGAD
VVVNYREEDVGEKLKGWADVVMDCVGEVEAGEKVMKDGGKMLTIVTMGSR
FMMLTPTTKLITSLANMLAAGKFTVVLDSVHPFSKVDDALAKLSSGRAMG
KIVVKVVE*
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mRNA from alignment at ScGOVlb_425:1288839..1289765+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12738.t1 ID=Gvermi12738.t1|Name=Gvermi12738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=927bp|location=Sequence derived from alignment at ScGOVlb_425:1288839..1289765+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGTCCCCAACCATTCCCGCCACCATGAAAGCACTGCTTCAATACGA
TAAGCACGGCGCCGCCAACTTCCGCATCGCTCAAGTTGACACCCCAAAGC
CACAGCCGCACCAAGTGTTAATCCGCGTTCACGCCGCCTCCCTCAACCCC
ATCGACATCAAGCGCGGCTTAATGGTCGAAGACAAATATCCCATAACGGT
CGGTTACGACGTGGCCGGCGTCGTGGCCGCTGTGGGAGACTCAGTCTCAA
ACGTTGCTGTGGGAGATCGCGTTTTTGGGGACATCATGCGCGATAGTGCA
GGCCAAAAGTTCTCGGGCACCGTCGCGGAGTACTGCGTGTGCCCGGCCGA
CATCCTCGCCGTCATCCCGAACAACGTCTCCTTTGAGCAGGCCGCCGCCG
TGCCCGTGGCCGTGCTCACTACCATCGAGGCCATGGAAACAATGGGCGTC
AAGCCTGGCGATAACGTTTTTATCAGCGGCGGCGCTGGTGGTGTCGGTGT
GCACGCCATGCAGCTCGCGAAGAATGTGTACGAAGCGAGCCAAGTCGCCA
CCACCGCCTCGCTCGCGAAGTTTGACTTTGTCAAGAAGCACGGCGCGGAC
GTTGTGGTGAACTACAGGGAGGAAGATGTCGGTGAGAAACTGAAAGGGTG
GGCCGATGTTGTGATGGACTGCGTTGGTGAGGTGGAAGCTGGAGAAAAGG
TCATGAAAGACGGCGGCAAAATGCTCACCATCGTTACGATGGGGTCACGC
TTCATGATGCTGACACCGACCACTAAACTGATTACAAGCCTGGCCAACAT
GCTGGCCGCTGGAAAGTTCACCGTCGTGCTGGACTCCGTGCATCCGTTTT
CTAAAGTGGACGATGCCTTGGCCAAGCTTTCTAGCGGCAGGGCGATGGGC
AAGATAGTGGTCAAAGTTGTAGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1288839..1289765+

>Gvermi12738.t1 ID=Gvermi12738.t1|Name=Gvermi12738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=927bp|location=Sequence derived from alignment at ScGOVlb_425:1288839..1289765+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGTCCCCAACCATTCCCGCCACCATGAAAGCACTGCTTCAATACGA
TAAGCACGGCGCCGCCAACTTCCGCATCGCTCAAGTTGACACCCCAAAGC
CACAGCCGCACCAAGTGTTAATCCGCGTTCACGCCGCCTCCCTCAACCCC
ATCGACATCAAGCGCGGCTTAATGGTCGAAGACAAATATCCCATAACGGT
CGGTTACGACGTGGCCGGCGTCGTGGCCGCTGTGGGAGACTCAGTCTCAA
ACGTTGCTGTGGGAGATCGCGTTTTTGGGGACATCATGCGCGATAGTGCA
GGCCAAAAGTTCTCGGGCACCGTCGCGGAGTACTGCGTGTGCCCGGCCGA
CATCCTCGCCGTCATCCCGAACAACGTCTCCTTTGAGCAGGCCGCCGCCG
TGCCCGTGGCCGTGCTCACTACCATCGAGGCCATGGAAACAATGGGCGTC
AAGCCTGGCGATAACGTTTTTATCAGCGGCGGCGCTGGTGGTGTCGGTGT
GCACGCCATGCAGCTCGCGAAGAATGTGTACGAAGCGAGCCAAGTCGCCA
CCACCGCCTCGCTCGCGAAGTTTGACTTTGTCAAGAAGCACGGCGCGGAC
GTTGTGGTGAACTACAGGGAGGAAGATGTCGGTGAGAAACTGAAAGGGTG
GGCCGATGTTGTGATGGACTGCGTTGGTGAGGTGGAAGCTGGAGAAAAGG
TCATGAAAGACGGCGGCAAAATGCTCACCATCGTTACGATGGGGTCACGC
TTCATGATGCTGACACCGACCACTAAACTGATTACAAGCCTGGCCAACAT
GCTGGCCGCTGGAAAGTTCACCGTCGTGCTGGACTCCGTGCATCCGTTTT
CTAAAGTGGACGATGCCTTGGCCAAGCTTTCTAGCGGCAGGGCGATGGGC
AAGATAGTGGTCAAAGTTGTAGAATGA
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