Gvermi12824.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12824.t1
Unique NameGvermi12824.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1706720..1707472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog50452.A0A087GVJ0
PFAMsLMWPc
Max annot lvl35493|Streptophyta
KEGG koko:K01104
Evalue2.8e-10
EggNOG OGsCOG0394@1|root,KOG3217@2759|Eukaryota,37NNM@33090|Viridiplantae,3GCJD@35493|Streptophyta
EC3.1.3.48
Descriptionlow molecular weight
COG categoryT
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12824Gvermi12824Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1706720..1707472 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12824.t1.start1Gvermi12824.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1706720..1706722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12824.t1.CDS1Gvermi12824.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1706720..1707472 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12824.t1.exon1Gvermi12824.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1706720..1707472 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12824.t1.stop1Gvermi12824.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1707470..1707472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12824.t1Gvermi12824.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1706720..1707472 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12824.t1 ID=Gvermi12824.t1|Name=Gvermi12824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=251bp
MQDLAFALALPLKSTPPSYMRNSCKREKFFTSKRRTCACMSEFESNADFT
TGDAFREWILARDRGEVAHETSDAHASCAASRVAVLFVGRDNSTVSAAAE
AIFTDLCTRRALECFSCHSAGTRVNMEGELPDKGFIEALRFKRGLDISRK
MACALDKSDLESYNLIVCMDEQVRSELLFMYTDDEGRYNDAMEEKIVSLS
SYCSSPKLRKMQFRSGKYSPDAINLVLAALVDACNGLLVSLIESPPVPPS
*
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spliced messenger RNA

>Gvermi12824.t1 ID=Gvermi12824.t1|Name=Gvermi12824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_425:1706720..1707472+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGACCTGGCCTTCGCTCTCGCTCTTCCCTTGAAGTCTACACCGCC
TTCATATATGAGAAATTCATGCAAGAGGGAAAAATTTTTCACTTCAAAGC
GTCGAACTTGTGCATGCATGAGTGAGTTTGAAAGCAACGCGGATTTCACG
ACTGGCGACGCATTTCGTGAATGGATTTTAGCGCGAGATAGAGGGGAGGT
TGCACACGAAACTTCCGACGCACACGCTTCCTGTGCAGCATCGAGGGTTG
CTGTGCTTTTCGTTGGCCGTGACAACTCTACGGTGAGCGCTGCAGCCGAG
GCCATTTTCACCGATTTGTGTACGCGACGTGCTCTAGAGTGCTTCTCCTG
TCACTCTGCAGGAACAAGGGTGAACATGGAGGGGGAATTACCAGATAAAG
GGTTTATAGAGGCTTTGCGCTTTAAACGTGGACTGGATATAAGTCGCAAA
ATGGCTTGCGCGTTGGATAAAAGCGACCTGGAGAGCTACAATCTCATTGT
CTGTATGGACGAACAGGTCAGAAGTGAGTTACTCTTCATGTATACGGACG
ACGAAGGAAGGTACAATGACGCCATGGAAGAAAAAATCGTATCGCTTTCG
TCGTATTGTTCGAGCCCGAAACTGAGAAAGATGCAATTTCGATCTGGAAA
GTACAGCCCCGATGCTATCAACTTGGTACTTGCAGCTCTCGTTGACGCAT
GCAATGGGTTGCTGGTATCCCTGATAGAATCACCCCCTGTTCCGCCATCG
TAA
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protein sequence of Gvermi12824.t1

>Gvermi12824.t1 ID=Gvermi12824.t1|Name=Gvermi12824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=251bp
MQDLAFALALPLKSTPPSYMRNSCKREKFFTSKRRTCACMSEFESNADFT
TGDAFREWILARDRGEVAHETSDAHASCAASRVAVLFVGRDNSTVSAAAE
AIFTDLCTRRALECFSCHSAGTRVNMEGELPDKGFIEALRFKRGLDISRK
MACALDKSDLESYNLIVCMDEQVRSELLFMYTDDEGRYNDAMEEKIVSLS
SYCSSPKLRKMQFRSGKYSPDAINLVLAALVDACNGLLVSLIESPPVPPS
*
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mRNA from alignment at ScGOVlb_425:1706720..1707472+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12824.t1 ID=Gvermi12824.t1|Name=Gvermi12824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_425:1706720..1707472+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGACCTGGCCTTCGCTCTCGCTCTTCCCTTGAAGTCTACACCGCC
TTCATATATGAGAAATTCATGCAAGAGGGAAAAATTTTTCACTTCAAAGC
GTCGAACTTGTGCATGCATGAGTGAGTTTGAAAGCAACGCGGATTTCACG
ACTGGCGACGCATTTCGTGAATGGATTTTAGCGCGAGATAGAGGGGAGGT
TGCACACGAAACTTCCGACGCACACGCTTCCTGTGCAGCATCGAGGGTTG
CTGTGCTTTTCGTTGGCCGTGACAACTCTACGGTGAGCGCTGCAGCCGAG
GCCATTTTCACCGATTTGTGTACGCGACGTGCTCTAGAGTGCTTCTCCTG
TCACTCTGCAGGAACAAGGGTGAACATGGAGGGGGAATTACCAGATAAAG
GGTTTATAGAGGCTTTGCGCTTTAAACGTGGACTGGATATAAGTCGCAAA
ATGGCTTGCGCGTTGGATAAAAGCGACCTGGAGAGCTACAATCTCATTGT
CTGTATGGACGAACAGGTCAGAAGTGAGTTACTCTTCATGTATACGGACG
ACGAAGGAAGGTACAATGACGCCATGGAAGAAAAAATCGTATCGCTTTCG
TCGTATTGTTCGAGCCCGAAACTGAGAAAGATGCAATTTCGATCTGGAAA
GTACAGCCCCGATGCTATCAACTTGGTACTTGCAGCTCTCGTTGACGCAT
GCAATGGGTTGCTGGTATCCCTGATAGAATCACCCCCTGTTCCGCCATCG
TAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1706720..1707472+

>Gvermi12824.t1 ID=Gvermi12824.t1|Name=Gvermi12824.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=753bp|location=Sequence derived from alignment at ScGOVlb_425:1706720..1707472+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGACCTGGCCTTCGCTCTCGCTCTTCCCTTGAAGTCTACACCGCC
TTCATATATGAGAAATTCATGCAAGAGGGAAAAATTTTTCACTTCAAAGC
GTCGAACTTGTGCATGCATGAGTGAGTTTGAAAGCAACGCGGATTTCACG
ACTGGCGACGCATTTCGTGAATGGATTTTAGCGCGAGATAGAGGGGAGGT
TGCACACGAAACTTCCGACGCACACGCTTCCTGTGCAGCATCGAGGGTTG
CTGTGCTTTTCGTTGGCCGTGACAACTCTACGGTGAGCGCTGCAGCCGAG
GCCATTTTCACCGATTTGTGTACGCGACGTGCTCTAGAGTGCTTCTCCTG
TCACTCTGCAGGAACAAGGGTGAACATGGAGGGGGAATTACCAGATAAAG
GGTTTATAGAGGCTTTGCGCTTTAAACGTGGACTGGATATAAGTCGCAAA
ATGGCTTGCGCGTTGGATAAAAGCGACCTGGAGAGCTACAATCTCATTGT
CTGTATGGACGAACAGGTCAGAAGTGAGTTACTCTTCATGTATACGGACG
ACGAAGGAAGGTACAATGACGCCATGGAAGAAAAAATCGTATCGCTTTCG
TCGTATTGTTCGAGCCCGAAACTGAGAAAGATGCAATTTCGATCTGGAAA
GTACAGCCCCGATGCTATCAACTTGGTACTTGCAGCTCTCGTTGACGCAT
GCAATGGGTTGCTGGTATCCCTGATAGAATCACCCCCTGTTCCGCCATCG
TAA
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