Gvermi12780.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi12780.t1
Unique Name	Gvermi12780.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	357

Homology

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BLAST of Gvermi12780.t1 vs. uniprot
Match: A0A2V3IET1_9FLOR (BPI1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IET1_9FLOR)

HSP 1 Score: 394 bits (1012), Expect = 9.270e-134
Identity = 218/349 (62.46%), Postives = 266/349 (76.22%), Query Frame = 0

Query:   14 ARFTLHDDDELSHFVELDESHDYHPTSGPVPAPAPXXXXXXAAQRRAAAGAAGPEAHPA-----LVTKLVARYPSLDTEALKSLLSACGNDIDAASALVDMDTSVTPTDDAALAASLQERENRVLARRHRRNGASFALDQPQMDNLVTTLRDILVPALHAHFEELVLPDTNDRTASIAYSLKHLQVTALSLPKVTVRPALDRKFVLVNVLNAQLELHLGKWRYESKGFISLTDEGQARLSLQGLNIVIKLQPRWSHDGSAKVTVSDCQVTVDGVVRFNTFGAGANWAYNAVAVVLKPLVLSYVKEAIADNVTRSLALYLKEWSCSRPLDISHTSTPA-STSQSPVTAAE 356
            ARFTLHD D    F ELDES DY  T+   P P        +A   +A+    P  HPA     L++KLV RYPSLD + L +LL +C NDIDAAS LV+ DT+ +  DDA LAASLQERENR  + RHRRN A F L   QMD+LV+TL+ I+VPALHAHFEELVLPDT D+TASI YSL+H+QVTALSLP VTVRPA DRK V + VLNAQLELH+G W+YES+G + + D GQARLS+QGL I++KL+PRWSHDG+A++ VS+C VTVDGV RF T+GA A+WAY+A+A+VLKPLVLSYVKEAIAD+V+R+LALYL++WSCSR LD S  ST + S +Q+ +TAAE
Sbjct:    5 ARFTLHDGD----FAELDESADYETTASAAPGPVVARPALPSAPNLSASSPQ-PVQHPAQPHQSLLSKLVRRYPSLDKDVLTALLVSCDNDIDAASTLVEGDTNASSADDALLAASLQERENRRASVRHRRNNAVFPLQPFQMDSLVSTLKHIVVPALHAHFEELVLPDTTDQTASILYSLQHVQVTALSLPNVTVRPAPDRKSVFLTVLNAQLELHVGSWKYESRGIVPVNDAGQARLSVQGLTILLKLEPRWSHDGTARINVSECNVTVDGVTRFKTYGAKADWAYSAIALVLKPLVLSYVKEAIADSVSRALALYLRQWSCSRTLDASPGSTASPSATQAQLTAAE 348

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BLAST of Gvermi12780.t1 vs. uniprot
Match: R7QPP0_CHOCR (BPI1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP0_CHOCR)

HSP 1 Score: 217 bits (553), Expect = 2.630e-66
Identity = 115/215 (53.49%), Postives = 150/215 (69.77%), Query Frame = 0

Query:  154 LVTTLRDILVPALHAHFEELVLPDTNDRTASIAYSLKHLQVTALSLP--KVTVRPALDRKFVLVNVLNAQLELHLGKWRYESKGFISLTDEGQARLSLQGLNIVIKLQPRWSHDGSAKVTVSDCQVTVDGVVRFNTFGAGANWAYNAVAVVLKPLVLSYVKEAIADNVTRSLALYLKEWSCSRPLDISHTSTPA----------STSQSPVTAAE 356
            +V TLR+I+VPAL AHFEELVLPDT D +  + Y L+  QV+ LSLP   + V+P  D K + V+V+N  LEL +G+W YESKGF+ + D G AR+S+ G++I + L+PRWSH G  KV ++DC VT+DG VRF T GA A+WAY A+ VVLKPLV+SY+KEAIAD V+++LA +L +W+ SR LD      PA          ST QS VTAAE
Sbjct:    1 MVDTLREIVVPALRAHFEELVLPDTKDTSVGVEYELQRFQVSNLSLPPENIHVKPTTDGKLIRVSVVNTFLELEVGRWSYESKGFVPVKDAGTARVSVNGMSISVMLEPRWSHGGGTKVVIADCVVTIDGKVRFATEGAVADWAYKAITVVLKPLVVSYIKEAIADTVSKTLAFHLSQWAFSRSLD----DQPARAQRTEPQRPSTPQSTVTAAE 211

The following BLAST results are available for this feature:

BLAST of Gvermi12780.t1 vs. uniprot

BLAST of Gvermi12780.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IET1_9FLOR	9.270e-134	62.46	BPI1 domain-containing protein n=1 Tax=Gracilariop...	[more]
R7QPP0_CHOCR	2.630e-66	53.49	BPI1 domain-containing protein n=1 Tax=Chondrus cr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017942	Lipid-binding serum glycoprotein, N-terminal	PFAM	PF01273	LBP_BPI_CETP	coord: 160..320 e-value: 4.6E-12 score: 45.8
None	No IPR available	GENE3D	3.15.10.10		coord: 155..328 e-value: 7.6E-23 score: 83.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..55
IPR017943	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	SUPERFAMILY	55394	Bactericidal permeability-increasing protein, BPI	coord: 158..344

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1503464..1504534 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12780.t1	Gvermi12780.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_425 1503464..1504534 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi12780.t1 ID=Gvermi12780.t1|Name=Gvermi12780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=357bp
MSRQAQSQPQPSSARFTLHDDDELSHFVELDESHDYHPTSGPVPAPAPPS
PPDPAAQRRAAAGAAGPEAHPALVTKLVARYPSLDTEALKSLLSACGNDI
DAASALVDMDTSVTPTDDAALAASLQERENRVLARRHRRNGASFALDQPQ
MDNLVTTLRDILVPALHAHFEELVLPDTNDRTASIAYSLKHLQVTALSLP
KVTVRPALDRKFVLVNVLNAQLELHLGKWRYESKGFISLTDEGQARLSLQ
GLNIVIKLQPRWSHDGSAKVTVSDCQVTVDGVVRFNTFGAGANWAYNAVA
VVLKPLVLSYVKEAIADNVTRSLALYLKEWSCSRPLDISHTSTPASTSQS
PVTAAE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017942	Lipid-bd_serum_glycop_N
IPR017943	Bactericidal_perm-incr_a/b_dom