Gvermi12780.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12780.t1
Unique NameGvermi12780.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1503464..1504534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_006812152.1
Preferred nameBPIFC
PFAMsLBP_BPI_CETP,LBP_BPI_CETP_C
Max annot lvl33208|Metazoa
KEGG koko:K05399
KEGG TC1.C.40.1.2
KEGG Pathwayko04064,ko04620,ko05132,ko05152,map04064,map04620,map05132,map05152
GOsGO:0000323,GO:0001530,GO:0001775,GO:0001817,GO:0001818,GO:0001819,GO:0001889,GO:0002218,GO:0002221,GO:0002224,GO:0002232,GO:0002237,GO:0002252,GO:0002253,GO:0002263,GO:0002274,GO:0002275,GO:0002281,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002523,GO:0002526,GO:0002682,GO:0002683,GO:0002684,GO:0002685,GO:0002687,GO:0002688,GO:0002690,GO:0002694,GO:0002695,GO:0002696,GO:0002697,GO:0002699,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0006810,GO:0006869,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006955,GO:0006959,GO:0006968,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008228,GO:0008289,GO:0009593,GO:0009595,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010033,GO:0010494,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010647,GO:0010876,GO:0012505,GO:0015920,GO:0016192,GO:0016477,GO:0019221,GO:0019222,GO:0019730,GO:0019731,GO:0023051,GO:0023052,GO:0023056,GO:0030100,GO:0030141,GO:0030334,GO:0030335,GO:0030595,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031349,GO:0031410,GO:0031663,GO:0031974,GO:0031982,GO:0031983,GO:0032101,GO:0032103,GO:0032490,GO:0032496,GO:0032501,GO:0032502,GO:0032642,GO:0032675,GO:0032677,GO:0032680,GO:0032715,GO:0032717,GO:0032720,GO:0032722,GO:0032755,GO:0032757,GO:0032760,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033218,GO:0033993,GO:0034097,GO:0034121,GO:0034123,GO:0034142,GO:0034143,GO:0034145,GO:0034774,GO:0035578,GO:0035580,GO:0035770,GO:0036230,GO:0036464,GO:0040008,GO:0040011,GO:0040012,GO:0040017,GO:0042035,GO:0042108,GO:0042116,GO:0042119,GO:0042221,GO:0042268,GO:0042277,GO:0042330,GO:0042534,GO:0042535,GO:0042581,GO:0042582,GO:0042742,GO:0043030,GO:0043031,GO:0043032,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043900,GO:0043901,GO:0043903,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045087,GO:0045088,GO:0045089,GO:0045321,GO:0045807,GO:0045919,GO:0045926,GO:0046903,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0048870,GO:0050727,GO:0050729,GO:0050764,GO:0050766,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050829,GO:0050830,GO:0050865,GO:0050866,GO:0050867,GO:0050896,GO:0050900,GO:0050920,GO:0050921,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051270,GO:0051272,GO:0051606,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060099,GO:0060100,GO:0060205,GO:0060255,GO:0060263,GO:0060264,GO:0060265,GO:0060267,GO:0060326,GO:0060627,GO:0061008,GO:0061844,GO:0065007,GO:0065008,GO:0070013,GO:0070391,GO:0070887,GO:0070891,GO:0071216,GO:0071219,GO:0071222,GO:0071223,GO:0071310,GO:0071345,GO:0071396,GO:0071622,GO:0071624,GO:0071702,GO:0071723,GO:0080090,GO:0080134,GO:0090022,GO:0090023,GO:0090559,GO:0097367,GO:0097708,GO:0098542,GO:0098581,GO:0098657,GO:0099503,GO:1901264,GO:1901700,GO:1901701,GO:1902622,GO:1902624,GO:1903555,GO:1903556,GO:1903557,GO:1905153,GO:1905155,GO:1990904,GO:2000145,GO:2000147
Evalue0.000308
EggNOG OGsKOG4160@1|root,KOG4160@2759|Eukaryota,38WKA@33154|Opisthokonta,3BGZ4@33208|Metazoa,3D0RZ@33213|Bilateria
Descriptionlipopolysaccharide binding
COG categoryV
BRITEko00000,ko00001,ko02000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12780Gvermi12780Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1503464..1504534 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12780.t1.stop1Gvermi12780.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1503464..1503466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12780.t1.CDS1Gvermi12780.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1503464..1504534 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12780.t1.exon1Gvermi12780.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1503464..1504534 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12780.t1.start1Gvermi12780.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1504532..1504534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12780.t1Gvermi12780.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1503464..1504534 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12780.t1 ID=Gvermi12780.t1|Name=Gvermi12780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=357bp
MSRQAQSQPQPSSARFTLHDDDELSHFVELDESHDYHPTSGPVPAPAPPS
PPDPAAQRRAAAGAAGPEAHPALVTKLVARYPSLDTEALKSLLSACGNDI
DAASALVDMDTSVTPTDDAALAASLQERENRVLARRHRRNGASFALDQPQ
MDNLVTTLRDILVPALHAHFEELVLPDTNDRTASIAYSLKHLQVTALSLP
KVTVRPALDRKFVLVNVLNAQLELHLGKWRYESKGFISLTDEGQARLSLQ
GLNIVIKLQPRWSHDGSAKVTVSDCQVTVDGVVRFNTFGAGANWAYNAVA
VVLKPLVLSYVKEAIADNVTRSLALYLKEWSCSRPLDISHTSTPASTSQS
PVTAAE*
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spliced messenger RNA

>Gvermi12780.t1 ID=Gvermi12780.t1|Name=Gvermi12780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at ScGOVlb_425:1503464..1504534- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCCAAGCCCAATCTCAGCCGCAGCCGTCGTCAGCGCGTTTCAC
CCTGCATGACGACGACGAGCTCAGCCATTTCGTCGAGCTAGATGAGTCTC
ACGATTACCACCCCACATCGGGCCCCGTGCCCGCGCCTGCCCCGCCGAGC
CCGCCGGACCCCGCCGCGCAGCGGCGTGCCGCCGCCGGCGCGGCCGGCCC
TGAGGCGCACCCCGCTCTTGTCACGAAGCTCGTGGCCAGGTACCCCTCGC
TCGACACCGAGGCCCTCAAGTCGCTTCTCAGTGCCTGCGGGAACGACATC
GATGCCGCGAGTGCGCTGGTGGACATGGACACTTCCGTGACCCCTACCGA
CGATGCTGCACTTGCGGCGTCGCTTCAAGAACGAGAGAACCGCGTTCTTG
CCCGGCGTCATCGCAGGAACGGCGCTTCCTTTGCTCTGGATCAGCCGCAG
ATGGACAACCTTGTTACCACGCTCCGCGACATACTTGTCCCTGCACTGCA
TGCCCACTTCGAAGAGTTGGTGCTTCCAGACACAAATGACCGCACTGCTT
CCATTGCATACAGCTTAAAGCATCTGCAAGTCACCGCCTTATCGCTTCCA
AAGGTCACAGTTCGCCCGGCTCTTGATCGAAAGTTTGTTCTCGTCAACGT
CTTGAACGCTCAGCTTGAGTTACACCTTGGCAAATGGCGATACGAAAGCA
AGGGCTTTATTTCGCTCACGGATGAAGGCCAAGCTCGTTTGTCCCTCCAG
GGGCTCAACATTGTTATCAAGTTGCAACCACGTTGGTCTCACGATGGCAG
CGCCAAAGTGACTGTCAGTGACTGCCAAGTTACTGTTGACGGTGTTGTAC
GCTTTAACACCTTCGGTGCGGGAGCCAACTGGGCTTATAATGCTGTTGCC
GTTGTGCTCAAACCACTGGTTTTATCTTATGTCAAGGAAGCTATCGCCGA
TAATGTCACCCGCTCGCTCGCATTGTATCTGAAAGAATGGTCATGTTCTC
GGCCTCTGGATATTTCCCACACATCCACCCCAGCCAGTACGTCGCAATCA
CCTGTCACTGCGGCTGAATGA
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protein sequence of Gvermi12780.t1

>Gvermi12780.t1 ID=Gvermi12780.t1|Name=Gvermi12780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=357bp
MSRQAQSQPQPSSARFTLHDDDELSHFVELDESHDYHPTSGPVPAPAPPS
PPDPAAQRRAAAGAAGPEAHPALVTKLVARYPSLDTEALKSLLSACGNDI
DAASALVDMDTSVTPTDDAALAASLQERENRVLARRHRRNGASFALDQPQ
MDNLVTTLRDILVPALHAHFEELVLPDTNDRTASIAYSLKHLQVTALSLP
KVTVRPALDRKFVLVNVLNAQLELHLGKWRYESKGFISLTDEGQARLSLQ
GLNIVIKLQPRWSHDGSAKVTVSDCQVTVDGVVRFNTFGAGANWAYNAVA
VVLKPLVLSYVKEAIADNVTRSLALYLKEWSCSRPLDISHTSTPASTSQS
PVTAAE*
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mRNA from alignment at ScGOVlb_425:1503464..1504534-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12780.t1 ID=Gvermi12780.t1|Name=Gvermi12780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at ScGOVlb_425:1503464..1504534- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGCCAAGCCCAATCTCAGCCGCAGCCGTCGTCAGCGCGTTTCAC
CCTGCATGACGACGACGAGCTCAGCCATTTCGTCGAGCTAGATGAGTCTC
ACGATTACCACCCCACATCGGGCCCCGTGCCCGCGCCTGCCCCGCCGAGC
CCGCCGGACCCCGCCGCGCAGCGGCGTGCCGCCGCCGGCGCGGCCGGCCC
TGAGGCGCACCCCGCTCTTGTCACGAAGCTCGTGGCCAGGTACCCCTCGC
TCGACACCGAGGCCCTCAAGTCGCTTCTCAGTGCCTGCGGGAACGACATC
GATGCCGCGAGTGCGCTGGTGGACATGGACACTTCCGTGACCCCTACCGA
CGATGCTGCACTTGCGGCGTCGCTTCAAGAACGAGAGAACCGCGTTCTTG
CCCGGCGTCATCGCAGGAACGGCGCTTCCTTTGCTCTGGATCAGCCGCAG
ATGGACAACCTTGTTACCACGCTCCGCGACATACTTGTCCCTGCACTGCA
TGCCCACTTCGAAGAGTTGGTGCTTCCAGACACAAATGACCGCACTGCTT
CCATTGCATACAGCTTAAAGCATCTGCAAGTCACCGCCTTATCGCTTCCA
AAGGTCACAGTTCGCCCGGCTCTTGATCGAAAGTTTGTTCTCGTCAACGT
CTTGAACGCTCAGCTTGAGTTACACCTTGGCAAATGGCGATACGAAAGCA
AGGGCTTTATTTCGCTCACGGATGAAGGCCAAGCTCGTTTGTCCCTCCAG
GGGCTCAACATTGTTATCAAGTTGCAACCACGTTGGTCTCACGATGGCAG
CGCCAAAGTGACTGTCAGTGACTGCCAAGTTACTGTTGACGGTGTTGTAC
GCTTTAACACCTTCGGTGCGGGAGCCAACTGGGCTTATAATGCTGTTGCC
GTTGTGCTCAAACCACTGGTTTTATCTTATGTCAAGGAAGCTATCGCCGA
TAATGTCACCCGCTCGCTCGCATTGTATCTGAAAGAATGGTCATGTTCTC
GGCCTCTGGATATTTCCCACACATCCACCCCAGCCAGTACGTCGCAATCA
CCTGTCACTGCGGCTGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1503464..1504534-

>Gvermi12780.t1 ID=Gvermi12780.t1|Name=Gvermi12780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1071bp|location=Sequence derived from alignment at ScGOVlb_425:1503464..1504534- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGCCAAGCCCAATCTCAGCCGCAGCCGTCGTCAGCGCGTTTCAC
CCTGCATGACGACGACGAGCTCAGCCATTTCGTCGAGCTAGATGAGTCTC
ACGATTACCACCCCACATCGGGCCCCGTGCCCGCGCCTGCCCCGCCGAGC
CCGCCGGACCCCGCCGCGCAGCGGCGTGCCGCCGCCGGCGCGGCCGGCCC
TGAGGCGCACCCCGCTCTTGTCACGAAGCTCGTGGCCAGGTACCCCTCGC
TCGACACCGAGGCCCTCAAGTCGCTTCTCAGTGCCTGCGGGAACGACATC
GATGCCGCGAGTGCGCTGGTGGACATGGACACTTCCGTGACCCCTACCGA
CGATGCTGCACTTGCGGCGTCGCTTCAAGAACGAGAGAACCGCGTTCTTG
CCCGGCGTCATCGCAGGAACGGCGCTTCCTTTGCTCTGGATCAGCCGCAG
ATGGACAACCTTGTTACCACGCTCCGCGACATACTTGTCCCTGCACTGCA
TGCCCACTTCGAAGAGTTGGTGCTTCCAGACACAAATGACCGCACTGCTT
CCATTGCATACAGCTTAAAGCATCTGCAAGTCACCGCCTTATCGCTTCCA
AAGGTCACAGTTCGCCCGGCTCTTGATCGAAAGTTTGTTCTCGTCAACGT
CTTGAACGCTCAGCTTGAGTTACACCTTGGCAAATGGCGATACGAAAGCA
AGGGCTTTATTTCGCTCACGGATGAAGGCCAAGCTCGTTTGTCCCTCCAG
GGGCTCAACATTGTTATCAAGTTGCAACCACGTTGGTCTCACGATGGCAG
CGCCAAAGTGACTGTCAGTGACTGCCAAGTTACTGTTGACGGTGTTGTAC
GCTTTAACACCTTCGGTGCGGGAGCCAACTGGGCTTATAATGCTGTTGCC
GTTGTGCTCAAACCACTGGTTTTATCTTATGTCAAGGAAGCTATCGCCGA
TAATGTCACCCGCTCGCTCGCATTGTATCTGAAAGAATGGTCATGTTCTC
GGCCTCTGGATATTTCCCACACATCCACCCCAGCCAGTACGTCGCAATCA
CCTGTCACTGCGGCTGAATGA
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