Gvermi12778.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12778.t1
Unique NameGvermi12778.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1501201..1501891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Ga01353.1.p
PFAMsRibosomal_L23,Ribosomal_L23eN
Max annot lvl35493|Streptophyta
KEGG koko:K02893
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue1.63e-56
EggNOG OGsCOG0089@1|root,KOG1751@2759|Eukaryota,37TPV@33090|Viridiplantae,3GHW4@35493|Streptophyta
DescriptionBelongs to the universal ribosomal protein uL23 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12778Gvermi12778Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1501201..1501891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12778.t1Gvermi12778.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1501201..1501891 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12778.t1.stop1Gvermi12778.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1501201..1501203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12778.t1.CDS1Gvermi12778.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1501201..1501625 -
Gvermi12778.t1.CDS2Gvermi12778.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1501873..1501891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12778.t1.exon1Gvermi12778.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1501201..1501625 -
Gvermi12778.t1.exon2Gvermi12778.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1501873..1501891 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12778.t1.intron1Gvermi12778.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1501626..1501872 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12778.t1.start1Gvermi12778.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1501889..1501891 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12778.t1 ID=Gvermi12778.t1|Name=Gvermi12778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=148bp
MKPAAKEGPTRAEKAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPK
YPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKI
KAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI*
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spliced messenger RNA

>Gvermi12778.t1 ID=Gvermi12778.t1|Name=Gvermi12778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp|location=Sequence derived from alignment at ScGOVlb_425:1501201..1501891- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCAGCAGCTAAAGAGGGCCCAACAAGGGCTGAAAAGGCCGCACG
CGCCGCGAAGGCTGGTGTTCAGATCGTGAAGGGAAAGAAAGTTCGCACCT
CGGTTACATTCAGGCGTCCCGATACTCTGAAGCTGCCACGCGATCCGAAG
TATCCCCGACGAGCGCTAGCGAGAAAGCCAAAACTTGATGACCATCAGGT
GATCAAGTACCCGCTCACAACAGAGAGTGCTATGAAAATGATTGAAGACC
ATAATACAATTGTTTTCATCGTCGACGTGAGAGCCAACAAGCCGAAGATT
AAGGCGGCCGTCTCGAAGATGTATGACATCCAAGCTGTCAAGGTCAATAC
TCTTGTTCGTCCTGACGGTAAGAAAAAAGCCTATGTAAGACTGACGAAGG
AACACGATGCTCTTGATGTGGCTTCGAAGATTGGTGTAATCTAA
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protein sequence of Gvermi12778.t1

>Gvermi12778.t1 ID=Gvermi12778.t1|Name=Gvermi12778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=148bp
MKPAAKEGPTRAEKAARAAKAGVQIVKGKKVRTSVTFRRPDTLKLPRDPK
YPRRALARKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKI
KAAVSKMYDIQAVKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI*
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mRNA from alignment at ScGOVlb_425:1501201..1501891-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12778.t1 ID=Gvermi12778.t1|Name=Gvermi12778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=691bp|location=Sequence derived from alignment at ScGOVlb_425:1501201..1501891- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCAGCAGCTAAAGGTATGTCTCTTGCCTTAACGGGATCTTTCTT
CTGGAAAGTTTAATGGCCACCAGTCTCCGATAACGTATATCAGACGTTCT
GACGAACAACCGTGCTTTCTGTTTTGCGATGCGATATCCCTTTTGTTCCT
CGGAAACATGATTAATTCCATCACTCAATCACGCTTTGGACTTCTTTCTT
GTCGATGTTACGACTAATACACGCCCCGCGTCTGCGAACGTGAATTCGAT
ATTACGCTTGCAATAGAGGGCCCAACAAGGGCTGAAAAGGCCGCACGCGC
CGCGAAGGCTGGTGTTCAGATCGTGAAGGGAAAGAAAGTTCGCACCTCGG
TTACATTCAGGCGTCCCGATACTCTGAAGCTGCCACGCGATCCGAAGTAT
CCCCGACGAGCGCTAGCGAGAAAGCCAAAACTTGATGACCATCAGGTGAT
CAAGTACCCGCTCACAACAGAGAGTGCTATGAAAATGATTGAAGACCATA
ATACAATTGTTTTCATCGTCGACGTGAGAGCCAACAAGCCGAAGATTAAG
GCGGCCGTCTCGAAGATGTATGACATCCAAGCTGTCAAGGTCAATACTCT
TGTTCGTCCTGACGGTAAGAAAAAAGCCTATGTAAGACTGACGAAGGAAC
ACGATGCTCTTGATGTGGCTTCGAAGATTGGTGTAATCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1501201..1501891-

>Gvermi12778.t1 ID=Gvermi12778.t1|Name=Gvermi12778.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=444bp|location=Sequence derived from alignment at ScGOVlb_425:1501201..1501891- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCAGCAGCTAAAGAGGGCCCAACAAGGGCTGAAAAGGCCGCACG
CGCCGCGAAGGCTGGTGTTCAGATCGTGAAGGGAAAGAAAGTTCGCACCT
CGGTTACATTCAGGCGTCCCGATACTCTGAAGCTGCCACGCGATCCGAAG
TATCCCCGACGAGCGCTAGCGAGAAAGCCAAAACTTGATGACCATCAGGT
GATCAAGTACCCGCTCACAACAGAGAGTGCTATGAAAATGATTGAAGACC
ATAATACAATTGTTTTCATCGTCGACGTGAGAGCCAACAAGCCGAAGATT
AAGGCGGCCGTCTCGAAGATGTATGACATCCAAGCTGTCAAGGTCAATAC
TCTTGTTCGTCCTGACGGTAAGAAAAAAGCCTATGTAAGACTGACGAAGG
AACACGATGCTCTTGATGTGGCTTCGAAGATTGGTGTAATCTAA
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