Gvermi12697.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12697.t1
Unique Name	Gvermi12697.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	568

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1048019..1049722 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102125.Xen7305DRAFT_00009790
PFAMs	An_peroxidase,HemolysinCabind
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K19511
Evalue	7.15e-84
EggNOG OGs	COG2931@1\|root,COG3240@1\|root,COG2931@2\|Bacteria,COG3240@2\|Bacteria,1G1JS@1117\|Cyanobacteria
EC	1.11.1.7
Description	Animal haem peroxidase
COG category	C
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12697	Gvermi12697	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1048019..1049722 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12697.t1.start1	Gvermi12697.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1048019..1048021 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12697.t1.CDS1	Gvermi12697.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1048019..1049722 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12697.t1.exon1	Gvermi12697.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1048019..1049722 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12697.t1.stop1	Gvermi12697.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1049720..1049722 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12697.t1	Gvermi12697.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1048019..1049722 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1048019..1049722+
coding sequence from alignment at ScGOVlb_425:1048019..1049722+

mRNA sequence

>Gvermi12697.t1 ID=Gvermi12697.t1|Name=Gvermi12697.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=568bp
MASTKQLFLLISLFSVVFGQAPQPGSGVDASTFTVLAPPPSLASFALSAA
AIGSADPECAALPTRTLTGRCTSAVDPNLGEARRAQFSYLDVDSRTFAGE
DLPSARVISNIVSDQSGNTFNSIRLNELFVFFGQFIDHDFALSPLSEIEE
DIEVPEDDPDLNVADLKFERSLRARVSSSSSKERPITVLSSALDLSNVYG
VDQRRNAFLRVPNSCRLKTSDGNNLPFNTGGFANSPSTSSSFYIAGDTRV
NEHPVLTTMHTVFLREHNFICDLLEDAFPDMASESMYETARAINIAQYQK
VIYEEWLPAILGRTLPRYTGYKDSVNPTISLELTTAGFRVGHTMVNNGVS
RIDALGRRLPLITMEEMFFRDSNLAEGDVEQFIRGASRTRAQEVDVQVVD
ALRNFLFTNVPEDPGIDLIALNIQRGRDHNVPRFNELRQFFLGSPAGSFS
QISSNPSVQQKLQDAYGSVDNVEAWPGLMAEDKQGSVGLGRTNAELWRRE
FTRLRDGDRFFYLDNARHGQIPQNVLDALPEVKVGIFSTLSMFSRILGRT
TSLRPGEVGTGINVFRA*

spliced messenger RNA

>Gvermi12697.t1 ID=Gvermi12697.t1|Name=Gvermi12697.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at ScGOVlb_425:1048019..1049722+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCAACCAAACAACTTTTCCTTCTCATTTCATTATTTTCTGTTGT
GTTTGGCCAGGCCCCGCAGCCTGGTAGTGGAGTCGACGCAAGTACTTTCA
CAGTTCTTGCACCGCCACCCTCACTAGCTTCTTTTGCACTTTCTGCAGCT
GCTATTGGAAGTGCTGATCCAGAATGTGCAGCTCTGCCCACCAGAACGCT
TACAGGTcgctgcacatctgctgtggacccaaatctgggagaagcccgtc
gggcgcagttcagctatcttgatgtcgactcgagaacttttgccggcgaa
gatttgccaagtgctcgagttatTTCAAATATCGTATCAGATCAATCAGG
AAACACCTTCAATTCGATTCGACTGAATGAGCTTTTTGTTTTCTTTGGGC
AATTTATCGACCATGACTTCGCGTTGTCACCTCTTTCTGAGATAGAAGAG
GATATTGAGGTTCCAGAAGATGATCCTGATCTGAATGTTGCCGATTTGAA
ATTCGAGCGTTCTTTGCGAGCACGTGTAAGTTCGTCTTCGAGCAAGGAAC
GACCGATAACCGTGCTCTCTTCTGCCCTTGACCTTTCAAATGTTTACGGT
GTTGATCAACGAAGAAATGCGTTTTTAAGAGTTCCAAACTCTTGTCGTTT
GAAAACGTCAGATGGAAACAACTTGCCTTTCAACACCGGTGGGTTTGCAA
ACTCCCCGTCTACATCTAGCTCATTTTACATCGCAGGGGACACCCGAGTT
AATGAACACCCTGTTCTCACCACTATGCATACAGTTTTCCTTCGTGAACA
TAATTTCATCTGCGATCTGCTTGAGGACGCGTTTCCAGATATGGCCTCGG
AGAGCATGTACGAAACAGCAAGAGCCATAAACATAGCTCAATACCAGAAG
GTCATCTATGAAGAGTGGTTGCCAGCCATTCTTGGCCGCACCCTGCCTCG
GTACACTGGATATAAAGACAGTGTCAACCCAACTATAAGTCTGGAGCTAA
CGACAGCTGGATTCCGCGTTGGACACACTATGGTGAACAACGGGGTGAGC
AGAATTGATGCGCTAGGAAGGAGACTCCCGCTCATCACCATGGAAGAAAT
GTTCTTCCGTGACAGCAATCTTGCAGAGGGTGATGTGGAACAATTTATTC
GAGGCGCCTCTAGAACCCGCGCCCAAGAGGTTGACGTTCAAGTGGTCGAC
GCTTTACGCAACTTCCTTTTCACGAATGTCCCCGAGGACCCAGGAATTGA
CCTCATCGCGCTCAACATTCAGAGAGGTCGCGATCACAACGTACCGCGAT
TCAACGAACTACGACAGTTCTTCCTCGGTTCTCCCGCTGGGTCATTCAGC
CAAATATCTTCAAACCCATCTGTTCAACAGAAGCTTCAAGATGCGTACGG
CTCAGTGGACAATGTGGAGGCGTGGCCGGGGTTGATGGCAGAAGATAAGC
AAGGTAGTGTCGGACTTGGTCGGACAAATGCCGAATTATGGAGGCGAGAA
TTCACTCGGCTCAGAGATGGAGACAGATTCTTCTATCTCGACAATGCTCG
TCATGGCCAAATTCCTCAGAATGTTCTGGACGCTCTTCCAGAAGTCAAAG
TCGGAATTTTTTCGACACTTTCCATGTTCAGTCGTATTCTGGGCCGAACT
ACCTCATTGAGACCTGGCGAGGTAGGAACAGGTATAAACGTGTTCCGTGC
GTAG

protein sequence of Gvermi12697.t1

>Gvermi12697.t1 ID=Gvermi12697.t1|Name=Gvermi12697.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=568bp
MASTKQLFLLISLFSVVFGQAPQPGSGVDASTFTVLAPPPSLASFALSAA
AIGSADPECAALPTRTLTGRCTSAVDPNLGEARRAQFSYLDVDSRTFAGE
DLPSARVISNIVSDQSGNTFNSIRLNELFVFFGQFIDHDFALSPLSEIEE
DIEVPEDDPDLNVADLKFERSLRARVSSSSSKERPITVLSSALDLSNVYG
VDQRRNAFLRVPNSCRLKTSDGNNLPFNTGGFANSPSTSSSFYIAGDTRV
NEHPVLTTMHTVFLREHNFICDLLEDAFPDMASESMYETARAINIAQYQK
VIYEEWLPAILGRTLPRYTGYKDSVNPTISLELTTAGFRVGHTMVNNGVS
RIDALGRRLPLITMEEMFFRDSNLAEGDVEQFIRGASRTRAQEVDVQVVD
ALRNFLFTNVPEDPGIDLIALNIQRGRDHNVPRFNELRQFFLGSPAGSFS
QISSNPSVQQKLQDAYGSVDNVEAWPGLMAEDKQGSVGLGRTNAELWRRE
FTRLRDGDRFFYLDNARHGQIPQNVLDALPEVKVGIFSTLSMFSRILGRT
TSLRPGEVGTGINVFRA*

mRNA from alignment at ScGOVlb_425:1048019..1049722+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12697.t1 ID=Gvermi12697.t1|Name=Gvermi12697.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at ScGOVlb_425:1048019..1049722+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCAACCAAACAACTTTTCCTTCTCATTTCATTATTTTCTGTTGT
GTTTGGCCAGGCCCCGCAGCCTGGTAGTGGAGTCGACGCAAGTACTTTCA
CAGTTCTTGCACCGCCACCCTCACTAGCTTCTTTTGCACTTTCTGCAGCT
GCTATTGGAAGTGCTGATCCAGAATGTGCAGCTCTGCCCACCAGAACGCT
TACAGGTcgctgcacatctgctgtggacccaaatctgggagaagcccgtc
gggcgcagttcagctatcttgatgtcgactcgagaacttttgccggcgaa
gatttgccaagtgctcgagttatTTCAAATATCGTATCAGATCAATCAGG
AAACACCTTCAATTCGATTCGACTGAATGAGCTTTTTGTTTTCTTTGGGC
AATTTATCGACCATGACTTCGCGTTGTCACCTCTTTCTGAGATAGAAGAG
GATATTGAGGTTCCAGAAGATGATCCTGATCTGAATGTTGCCGATTTGAA
ATTCGAGCGTTCTTTGCGAGCACGTGTAAGTTCGTCTTCGAGCAAGGAAC
GACCGATAACCGTGCTCTCTTCTGCCCTTGACCTTTCAAATGTTTACGGT
GTTGATCAACGAAGAAATGCGTTTTTAAGAGTTCCAAACTCTTGTCGTTT
GAAAACGTCAGATGGAAACAACTTGCCTTTCAACACCGGTGGGTTTGCAA
ACTCCCCGTCTACATCTAGCTCATTTTACATCGCAGGGGACACCCGAGTT
AATGAACACCCTGTTCTCACCACTATGCATACAGTTTTCCTTCGTGAACA
TAATTTCATCTGCGATCTGCTTGAGGACGCGTTTCCAGATATGGCCTCGG
AGAGCATGTACGAAACAGCAAGAGCCATAAACATAGCTCAATACCAGAAG
GTCATCTATGAAGAGTGGTTGCCAGCCATTCTTGGCCGCACCCTGCCTCG
GTACACTGGATATAAAGACAGTGTCAACCCAACTATAAGTCTGGAGCTAA
CGACAGCTGGATTCCGCGTTGGACACACTATGGTGAACAACGGGGTGAGC
AGAATTGATGCGCTAGGAAGGAGACTCCCGCTCATCACCATGGAAGAAAT
GTTCTTCCGTGACAGCAATCTTGCAGAGGGTGATGTGGAACAATTTATTC
GAGGCGCCTCTAGAACCCGCGCCCAAGAGGTTGACGTTCAAGTGGTCGAC
GCTTTACGCAACTTCCTTTTCACGAATGTCCCCGAGGACCCAGGAATTGA
CCTCATCGCGCTCAACATTCAGAGAGGTCGCGATCACAACGTACCGCGAT
TCAACGAACTACGACAGTTCTTCCTCGGTTCTCCCGCTGGGTCATTCAGC
CAAATATCTTCAAACCCATCTGTTCAACAGAAGCTTCAAGATGCGTACGG
CTCAGTGGACAATGTGGAGGCGTGGCCGGGGTTGATGGCAGAAGATAAGC
AAGGTAGTGTCGGACTTGGTCGGACAAATGCCGAATTATGGAGGCGAGAA
TTCACTCGGCTCAGAGATGGAGACAGATTCTTCTATCTCGACAATGCTCG
TCATGGCCAAATTCCTCAGAATGTTCTGGACGCTCTTCCAGAAGTCAAAG
TCGGAATTTTTTCGACACTTTCCATGTTCAGTCGTATTCTGGGCCGAACT
ACCTCATTGAGACCTGGCGAGGTAGGAACAGGTATAAACGTGTTCCGTGC
GTAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1048019..1049722+

>Gvermi12697.t1 ID=Gvermi12697.t1|Name=Gvermi12697.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1704bp|location=Sequence derived from alignment at ScGOVlb_425:1048019..1049722+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCAACCAAACAACTTTTCCTTCTCATTTCATTATTTTCTGTTGT
GTTTGGCCAGGCCCCGCAGCCTGGTAGTGGAGTCGACGCAAGTACTTTCA
CAGTTCTTGCACCGCCACCCTCACTAGCTTCTTTTGCACTTTCTGCAGCT
GCTATTGGAAGTGCTGATCCAGAATGTGCAGCTCTGCCCACCAGAACGCT
TACAGGTcgctgcacatctgctgtggacccaaatctgggagaagcccgtc
gggcgcagttcagctatcttgatgtcgactcgagaacttttgccggcgaa
gatttgccaagtgctcgagttatTTCAAATATCGTATCAGATCAATCAGG
AAACACCTTCAATTCGATTCGACTGAATGAGCTTTTTGTTTTCTTTGGGC
AATTTATCGACCATGACTTCGCGTTGTCACCTCTTTCTGAGATAGAAGAG
GATATTGAGGTTCCAGAAGATGATCCTGATCTGAATGTTGCCGATTTGAA
ATTCGAGCGTTCTTTGCGAGCACGTGTAAGTTCGTCTTCGAGCAAGGAAC
GACCGATAACCGTGCTCTCTTCTGCCCTTGACCTTTCAAATGTTTACGGT
GTTGATCAACGAAGAAATGCGTTTTTAAGAGTTCCAAACTCTTGTCGTTT
GAAAACGTCAGATGGAAACAACTTGCCTTTCAACACCGGTGGGTTTGCAA
ACTCCCCGTCTACATCTAGCTCATTTTACATCGCAGGGGACACCCGAGTT
AATGAACACCCTGTTCTCACCACTATGCATACAGTTTTCCTTCGTGAACA
TAATTTCATCTGCGATCTGCTTGAGGACGCGTTTCCAGATATGGCCTCGG
AGAGCATGTACGAAACAGCAAGAGCCATAAACATAGCTCAATACCAGAAG
GTCATCTATGAAGAGTGGTTGCCAGCCATTCTTGGCCGCACCCTGCCTCG
GTACACTGGATATAAAGACAGTGTCAACCCAACTATAAGTCTGGAGCTAA
CGACAGCTGGATTCCGCGTTGGACACACTATGGTGAACAACGGGGTGAGC
AGAATTGATGCGCTAGGAAGGAGACTCCCGCTCATCACCATGGAAGAAAT
GTTCTTCCGTGACAGCAATCTTGCAGAGGGTGATGTGGAACAATTTATTC
GAGGCGCCTCTAGAACCCGCGCCCAAGAGGTTGACGTTCAAGTGGTCGAC
GCTTTACGCAACTTCCTTTTCACGAATGTCCCCGAGGACCCAGGAATTGA
CCTCATCGCGCTCAACATTCAGAGAGGTCGCGATCACAACGTACCGCGAT
TCAACGAACTACGACAGTTCTTCCTCGGTTCTCCCGCTGGGTCATTCAGC
CAAATATCTTCAAACCCATCTGTTCAACAGAAGCTTCAAGATGCGTACGG
CTCAGTGGACAATGTGGAGGCGTGGCCGGGGTTGATGGCAGAAGATAAGC
AAGGTAGTGTCGGACTTGGTCGGACAAATGCCGAATTATGGAGGCGAGAA
TTCACTCGGCTCAGAGATGGAGACAGATTCTTCTATCTCGACAATGCTCG
TCATGGCCAAATTCCTCAGAATGTTCTGGACGCTCTTCCAGAAGTCAAAG
TCGGAATTTTTTCGACACTTTCCATGTTCAGTCGTATTCTGGGCCGAACT
ACCTCATTGAGACCTGGCGAGGTAGGAACAGGTATAAACGTGTTCCGTGC
GTAG