Gvermi12713.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12713.t1
Unique NameGvermi12713.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1104114..1104779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO47205
Preferred namePRDX6
PFAMs1-cysPrx_C,AhpC-TSA
Max annot lvl33208|Metazoa
KEGG rclassRC00034
KEGG koko:K11188
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
GOsGO:0000302,GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004601,GO:0004602,GO:0004620,GO:0004623,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009636,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016042,GO:0016043,GO:0016192,GO:0016209,GO:0016298,GO:0016491,GO:0016684,GO:0016787,GO:0016788,GO:0016999,GO:0017001,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019899,GO:0022607,GO:0030030,GO:0030031,GO:0030141,GO:0031323,GO:0031325,GO:0031410,GO:0031625,GO:0031974,GO:0031982,GO:0031983,GO:0032060,GO:0032940,GO:0033120,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042221,GO:0042582,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043484,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045935,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0046903,GO:0046983,GO:0047499,GO:0048024,GO:0048026,GO:0048471,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051252,GO:0051254,GO:0051716,GO:0052689,GO:0055114,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0071840,GO:0072593,GO:0080090,GO:0097237,GO:0097708,GO:0098754,GO:0098869,GO:0099503,GO:0120031,GO:0120036,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990748
Evalue4.97e-91
EggNOG OGsCOG0450@1|root,KOG0854@2759|Eukaryota,38CN4@33154|Opisthokonta,3BBQ4@33208|Metazoa
EC1.11.1.15,1.11.1.7
DescriptionThiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. Also has phospholipase activity, and can therefore either reduce the oxidized sn-2 fatty acyl grup of phospholipids (peroxidase activity) or hydrolyze the sn-2 ester bond of phospholipids (phospholipase activity). These activities are dependent on binding to phospholipids at acidic pH and to oxidized phospholipds at cytosolic pH. Plays a role in cell protection against oxidative stress by detoxifying peroxides and in phospholipid homeostasis
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12713Gvermi12713Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1104114..1104779 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12713.t1.start1Gvermi12713.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1104114..1104116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12713.t1.CDS1Gvermi12713.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1104114..1104779 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12713.t1.exon1Gvermi12713.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1104114..1104779 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12713.t1.stop1Gvermi12713.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1104777..1104779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12713.t1Gvermi12713.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1104114..1104779 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12713.t1 ID=Gvermi12713.t1|Name=Gvermi12713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=222bp
MAPLIGETAPDFTADSTDGELTLHEYIKGGWAVLFSHPADFTPVCTTELA
RVSQLLPEFEKRNVKCLALSCDDAASHRAWVPDICAYAKRDGAALGYPII
ADADRSIARAYGMLPAAEGDGMPMTVRSVFVIGPDRKVKLSLTYPASTGR
NFDEILRVIDSLQLAVSSKVATPVDWTKGGECVVLPSVGDDQAAELFPKG
VSALPLPSGKPYLRMTPMPDA*
back to top

spliced messenger RNA

>Gvermi12713.t1 ID=Gvermi12713.t1|Name=Gvermi12713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1104114..1104779+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGCTCATCGGGGAGACGGCGCCCGACTTCACGGCCGACTCGAC
GGACGGCGAGCTCACGCTGCACGAGTACATCAAGGGCGGGTGGGCCGTGC
TGTTCTCGCACCCGGCCGACTTCACGCCGGTGTGCACGACCGAGTTGGCG
CGCGTGTCGCAGCTGCTGCCCGAGTTCGAGAAGCGCAACGTCAAGTGCCT
GGCGCTGTCGTGCGACGACGCGGCGTCGCACCGCGCGTGGGTGCCGGACA
TCTGCGCGTACGCCAAGCGCGACGGCGCGGCGCTGGGCTACCCGATCATC
GCCGACGCCGACCGCAGCATCGCGCGCGCGTACGGCATGCTGCCGGCGGC
GGAGGGCGACGGCATGCCCATGACGGTGCGCTCGGTGTTCGTGATCGGGC
CGGACCGCAAGGTGAAGCTGTCGCTGACGTACCCGGCCAGCACGGGGCGC
AACTTTGACGAGATTCTGCGCGTGATCGACTCGCTGCAGCTGGCCGTCAG
CAGCAAGGTGGCCACGCCGGTGGACTGGACCAAGGGCGGCGAGTGCGTCG
TGCTGCCCAGCGTGGGCGACGACCAGGCGGCGGAGCTGTTCCCGAAGGGC
GTCAGCGCGCTGCCGCTACCCAGCGGAAAGCCGTACCTGCGCATGACGCC
CATGCCGGACGCGTGA
back to top

protein sequence of Gvermi12713.t1

>Gvermi12713.t1 ID=Gvermi12713.t1|Name=Gvermi12713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=222bp
MAPLIGETAPDFTADSTDGELTLHEYIKGGWAVLFSHPADFTPVCTTELA
RVSQLLPEFEKRNVKCLALSCDDAASHRAWVPDICAYAKRDGAALGYPII
ADADRSIARAYGMLPAAEGDGMPMTVRSVFVIGPDRKVKLSLTYPASTGR
NFDEILRVIDSLQLAVSSKVATPVDWTKGGECVVLPSVGDDQAAELFPKG
VSALPLPSGKPYLRMTPMPDA*
back to top

mRNA from alignment at ScGOVlb_425:1104114..1104779+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12713.t1 ID=Gvermi12713.t1|Name=Gvermi12713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1104114..1104779+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCGCTCATCGGGGAGACGGCGCCCGACTTCACGGCCGACTCGAC
GGACGGCGAGCTCACGCTGCACGAGTACATCAAGGGCGGGTGGGCCGTGC
TGTTCTCGCACCCGGCCGACTTCACGCCGGTGTGCACGACCGAGTTGGCG
CGCGTGTCGCAGCTGCTGCCCGAGTTCGAGAAGCGCAACGTCAAGTGCCT
GGCGCTGTCGTGCGACGACGCGGCGTCGCACCGCGCGTGGGTGCCGGACA
TCTGCGCGTACGCCAAGCGCGACGGCGCGGCGCTGGGCTACCCGATCATC
GCCGACGCCGACCGCAGCATCGCGCGCGCGTACGGCATGCTGCCGGCGGC
GGAGGGCGACGGCATGCCCATGACGGTGCGCTCGGTGTTCGTGATCGGGC
CGGACCGCAAGGTGAAGCTGTCGCTGACGTACCCGGCCAGCACGGGGCGC
AACTTTGACGAGATTCTGCGCGTGATCGACTCGCTGCAGCTGGCCGTCAG
CAGCAAGGTGGCCACGCCGGTGGACTGGACCAAGGGCGGCGAGTGCGTCG
TGCTGCCCAGCGTGGGCGACGACCAGGCGGCGGAGCTGTTCCCGAAGGGC
GTCAGCGCGCTGCCGCTACCCAGCGGAAAGCCGTACCTGCGCATGACGCC
CATGCCGGACGCGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1104114..1104779+

>Gvermi12713.t1 ID=Gvermi12713.t1|Name=Gvermi12713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1104114..1104779+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCGCTCATCGGGGAGACGGCGCCCGACTTCACGGCCGACTCGAC
GGACGGCGAGCTCACGCTGCACGAGTACATCAAGGGCGGGTGGGCCGTGC
TGTTCTCGCACCCGGCCGACTTCACGCCGGTGTGCACGACCGAGTTGGCG
CGCGTGTCGCAGCTGCTGCCCGAGTTCGAGAAGCGCAACGTCAAGTGCCT
GGCGCTGTCGTGCGACGACGCGGCGTCGCACCGCGCGTGGGTGCCGGACA
TCTGCGCGTACGCCAAGCGCGACGGCGCGGCGCTGGGCTACCCGATCATC
GCCGACGCCGACCGCAGCATCGCGCGCGCGTACGGCATGCTGCCGGCGGC
GGAGGGCGACGGCATGCCCATGACGGTGCGCTCGGTGTTCGTGATCGGGC
CGGACCGCAAGGTGAAGCTGTCGCTGACGTACCCGGCCAGCACGGGGCGC
AACTTTGACGAGATTCTGCGCGTGATCGACTCGCTGCAGCTGGCCGTCAG
CAGCAAGGTGGCCACGCCGGTGGACTGGACCAAGGGCGGCGAGTGCGTCG
TGCTGCCCAGCGTGGGCGACGACCAGGCGGCGGAGCTGTTCCCGAAGGGC
GTCAGCGCGCTGCCGCTACCCAGCGGAAAGCCGTACCTGCGCATGACGCC
CATGCCGGACGCGTGA
back to top