Gvermi12857.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12857.t1
Unique NameGvermi12857.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length245
Homology
BLAST of Gvermi12857.t1 vs. uniprot
Match: R7QK66_CHOCR (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK66_CHOCR)

HSP 1 Score: 144 bits (362), Expect = 2.420e-39
Identity = 72/103 (69.90%), Postives = 82/103 (79.61%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRVDTPQEGAADAPTRRR 103
            MGRRKGTSAFPVARIKKMMQSD++VGKIATVTPVLVAKALECMME+VL EAAD+A  RH+ T+ P HLK CV RND+FDFLR +   V   +   A +P  RR
Sbjct:    1 MGRRKGTSAFPVARIKKMMQSDEEVGKIATVTPVLVAKALECMMEDVLREAADVARERHTRTVTPLHLKTCVARNDAFDFLRPIVRHVSGDEGKRARSPADRR 103          
BLAST of Gvermi12857.t1 vs. uniprot
Match: A0A2V3J2S5_9FLOR (Dr1-associated corepressor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2S5_9FLOR)

HSP 1 Score: 142 bits (359), Expect = 1.600e-38
Identity = 75/105 (71.43%), Postives = 83/105 (79.05%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRVD--TPQEGAADAPTRRR 103
            MGRRKGTSAFPVARIKKMMQ+D++VGKIAT TPVLVAKALECMME VLHEAA  A +R + T+ PQHLK  VMRNDSFDFLR +F  VD  T    A+  P RRR
Sbjct:    1 MGRRKGTSAFPVARIKKMMQADEEVGKIATATPVLVAKALECMMEYVLHEAAQEARSRSTTTLTPQHLKLAVMRNDSFDFLRPLFSAVDLRTDDNHASPRPRRRR 105          
BLAST of Gvermi12857.t1 vs. uniprot
Match: A0A7S1T9N3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T9N3_9RHOD)

HSP 1 Score: 101 bits (252), Expect = 7.730e-24
Identity = 49/93 (52.69%), Postives = 72/93 (77.42%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLR----HVFDRVD 89
            MGRR+G + FP+ARIKKMMQSD++VGKIAT  P+L++KALE M+E+++ ++A +A AR + T+ P+H K C+MR + FDFL+    +V D V+
Sbjct:    1 MGRRRGGTVFPLARIKKMMQSDEEVGKIATGAPLLLSKALELMLEDLVTQSAMVAKARGAQTVAPRHFKECIMRENLFDFLKGNVENVLDMVE 93          
BLAST of Gvermi12857.t1 vs. uniprot
Match: A0A7S0XJ73_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJ73_9RHOD)

HSP 1 Score: 104 bits (259), Expect = 2.940e-23
Identity = 50/88 (56.82%), Postives = 69/88 (78.41%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRV 88
            MG+++ + AFPVARIKKMMQSD+DVGKIAT  P+LVAKALE ++E+++  AA +A    + TI PQHLK  V +N++FDFL ++F+ V
Sbjct:    1 MGKKRASVAFPVARIKKMMQSDEDVGKIATGAPLLVAKALEVVLEDLIRSAAGVATQCKARTISPQHLKQTVFQNEAFDFLHNIFEHV 88          
BLAST of Gvermi12857.t1 vs. uniprot
Match: A0A1X6PFB2_PORUM (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFB2_PORUM)

HSP 1 Score: 107 bits (267), Expect = 6.070e-23
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = 0
Query:    1 MGRRKG-TSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRVDT-----PQEGAADAPTRRR 103
            MGRRK  T+AFP +RIKKMMQ+D+DVGK+AT TP+LV KALE ++++++ +AA +A  R + T+ P HLK+ V  +D+FDFL+ +F+RV       P  GA +A   RR
Sbjct:    1 MGRRKSSTAAFPPSRIKKMMQADEDVGKVATATPILVGKALEMLLQDLITQAAGVASGRRAKTLTPAHLKSTVHADDTFDFLKSIFERVPDLESKPPVGGAGEARAPRR 109          
BLAST of Gvermi12857.t1 vs. uniprot
Match: A0A2N1JB34_9BASI (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Malassezia vespertilionis TaxID=2020962 RepID=A0A2N1JB34_9BASI)

HSP 1 Score: 93.2 bits (230), Expect = 2.570e-20
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRVDTPQEGAADAPTRRR 103
            M RR   S FP+ARIK++MQ+D+DVGK+A  TPV+++KALE  M+N++  A           + P HLK  V  N++FDFL+ + D+V  P E    +  +RR
Sbjct:    1 MVRRGVASKFPIARIKRIMQADEDVGKVAQATPVVISKALELFMQNIVESAVGQTRKSGGKRVAPYHLKRAVQANETFDFLKDIVDKVVDPLENGGTSTRKRR 103          
BLAST of Gvermi12857.t1 vs. uniprot
Match: A8PXN7_MALGO (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) TaxID=425265 RepID=A8PXN7_MALGO)

HSP 1 Score: 92.8 bits (229), Expect = 5.620e-20
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRVDTPQEGAADAPTRRR 103
            M +R   S FP+ARIK++MQ+D+DVGK+A  TPV+++KALE  M++++  AA+         + P HLK   +  ++FDFL+ + ++V  P E      T+RR
Sbjct:    1 MAKRSAASKFPIARIKRIMQADEDVGKVAQATPVVISKALELFMQDIVESAAEQTRKTGGKRVAPYHLKRAALTTETFDFLKDIVEKVPDPLEAGHSRGTKRR 103          
BLAST of Gvermi12857.t1 vs. uniprot
Match: A0A3G2SB19_9BASI (DNA polymerase epsilon subunit C n=2 Tax=Malassezia restricta TaxID=76775 RepID=A0A3G2SB19_9BASI)

HSP 1 Score: 93.2 bits (230), Expect = 1.840e-19
Identity = 42/103 (40.78%), Postives = 66/103 (64.08%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRVDTPQEGAADAPTRRR 103
            M RR  +S FP+ARIK++MQ+D+DVGK+A  TPV+++KALE  +++++  A +         + P HLK   +  ++FDFLR + ++V  P E A    T+RR
Sbjct:    1 MVRRSASSKFPIARIKRIMQADEDVGKVAQATPVVISKALELFIQDIVETAVEQTRKTGGKRVAPYHLKRAALMTETFDFLRDILEKVPDPLESATPRGTKRR 103          
BLAST of Gvermi12857.t1 vs. uniprot
Match: A0A0M8MNX7_9BASI (Dna polymerase epsilon subunit dpb3 n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0M8MNX7_9BASI)

HSP 1 Score: 89.4 bits (220), Expect = 4.720e-19
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRVDTPQE-GAADAPTRRR 103
            M +R  TS FP+ARIK++MQ+D+DVGK+A  TPV+++KALE  M++++  A +         + P HLK   +  ++FDFL+ + ++V  P E G A   T+RR
Sbjct:    1 MVKRSATSKFPIARIKRIMQADEDVGKVAQATPVVISKALELFMQDIVASAVEQTRKTGGKRVAPYHLKRAALTIETFDFLKDIVEKVADPLESGGAARSTKRR 104          
BLAST of Gvermi12857.t1 vs. uniprot
Match: A0A316Z0B6_9BASI (Histone-fold-containing protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316Z0B6_9BASI)

HSP 1 Score: 89.0 bits (219), Expect = 5.940e-19
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 0
Query:    1 MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHEAADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRVD-------TPQEGAADAPTRRR 103
            MG+R GTS FPVARIKK+MQS+++VGK+A  TPVL++KALE  M  ++      A A+ +  + P HLK  V ++++ DF + +   +D          EGAA    RR+
Sbjct:    1 MGKRSGTSKFPVARIKKIMQSNEEVGKVAQATPVLISKALELFMAELIDATVKEAKAKGAKRVAPHHLKRAVHKSETLDFCKAIVGELDEGLEEDKAKDEGAARGGKRRK 110          
The following BLAST results are available for this feature:
BLAST of Gvermi12857.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QK66_CHOCR2.420e-3969.90CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ch... [more]
A0A2V3J2S5_9FLOR1.600e-3871.43Dr1-associated corepressor n=1 Tax=Gracilariopsis ... [more]
A0A7S1T9N3_9RHOD7.730e-2452.69Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S0XJ73_9RHOD2.940e-2356.82Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A1X6PFB2_PORUM6.070e-2350.46CBFD_NFYB_HMF domain-containing protein n=1 Tax=Po... [more]
A0A2N1JB34_9BASI2.570e-2042.72CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ma... [more]
A8PXN7_MALGO5.620e-2039.81CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ma... [more]
A0A3G2SB19_9BASI1.840e-1940.78DNA polymerase epsilon subunit C n=2 Tax=Malassezi... [more]
A0A0M8MNX7_9BASI4.720e-1941.35Dna polymerase epsilon subunit dpb3 n=1 Tax=Malass... [more]
A0A316Z0B6_9BASI5.940e-1941.82Histone-fold-containing protein n=1 Tax=Tilletiops... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 2..87
e-value: 4.0E-23
score: 83.7
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 6..87
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 10..72
e-value: 3.7E-15
score: 55.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..128
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 7..147
IPR027116Negative cofactor 2 complex subunit alpha/DNA polymerase epsilon subunit CPANTHERPTHR10252:SF5DR1-ASSOCIATED COREPRESSORcoord: 7..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1821871..1822605 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12857.t1Gvermi12857.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1821871..1822605 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12857.t1 ID=Gvermi12857.t1|Name=Gvermi12857.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=245bp
MGRRKGTSAFPVARIKKMMQSDDDVGKIATVTPVLVAKALECMMENVLHE
AADIAHARHSNTILPQHLKACVMRNDSFDFLRHVFDRVDTPQEGAADAPT
RRRRRQTRLASTPTPNSSSDSASAPATKRPRSPPSPASPDRQHAKAHRTA
AAAPRRSPPSAPRVSPPCSQRPALSPLPRTAALHDDDEDYDDDEHHAATS
AASNDRDPAAAVAPPSDERDHASAGLEMNPKRAADRVSVQALVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
IPR027116Bur6/Dpb3