Gvermi12804.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12804.t1
Unique NameGvermi12804.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length222
Homology
BLAST of Gvermi12804.t1 vs. uniprot
Match: A0A2V3II35_9FLOR (Putative pre-16S rRNA nuclease n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II35_9FLOR)

HSP 1 Score: 236 bits (602), Expect = 1.310e-75
Identity = 123/198 (62.12%), Postives = 154/198 (77.78%), Query Frame = 0
Query:   25 RSKRKIVARIGERTLGVDYGVRRVGLAISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSGIVGRIVEDFIDSESAVMLLQRHYSDMDDYKAELVHVPKVVSVEQRRI-EERMTYAEWKKLAMQRAAQHVQSGKKKKKK 221
            RS+  +VARIGERTLGVDYG+RRVGLA+SVGVAPRPLQR++H  +P + A DVAR+A+ NLA+AIVVGMP  + G E  QA  TR F+++L+  APWAKI  LNETFTS DA+ QL D GI G+ V+ +IDS SAVMLLQR++SD DDYKAE++H P+    E+RR   ER+T+AEW+K  M RAAQ  Q+GK+ KKK
Sbjct:   22 RSRVNLVARIGERTLGVDYGLRRVGLAVSVGVAPRPLQRVEHRNDPRRAALDVARVANSNLADAIVVGMPFLLVGAEGEQALATRRFIEELVSSAPWAKIFTLNETFTSMDARTQLYDMGITGKDVKTYIDSTSAVMLLQRYFSDNDDYKAEVIHTPQPAGEEERRSGNERITFAEWRKQIMDRAAQGSQTGKQPKKK 219          
BLAST of Gvermi12804.t1 vs. uniprot
Match: A0A7S1HCJ2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HCJ2_HEMAN)

HSP 1 Score: 109 bits (272), Expect = 1.710e-26
Identity = 57/137 (41.61%), Postives = 88/137 (64.23%), Query Frame = 0
Query:   32 ARIGERTLGVDYGVRRVGLAISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSGIVGRIVEDFIDSESAVMLLQRHYS 168
            +++G +T+GVDYG+RR G+ +SVG APRPL  I+H  +P  VA +VA  A   LAE IVVG+P++  G E  QA+ TR  V  L   AP   I + +E F+S  A+E+L ++G   R ++  +D+ ++V +LQ  ++
Sbjct:    1 SQMGRKTIGVDYGLRRTGVCVSVGYAPRPLPLIEHNRDPAFVAKEVAEHARRELAEQIVVGLPLNSRGGEGEQANATRVMVAALTEAAPGCNIYLWDERFSSAVAREKLEEAGYSSRSMKGLVDTVASVGILQDFFA 137          
BLAST of Gvermi12804.t1 vs. uniprot
Match: A0A7S2ZDD4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDD4_9RHOD)

HSP 1 Score: 107 bits (266), Expect = 5.130e-25
Identity = 62/160 (38.75%), Postives = 96/160 (60.00%), Query Frame = 0
Query:   20 CIGNQRSKRKIVARIGERTLGVDYGVRRVGLAISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSGIVGRIVEDFIDSESAVMLLQRHYSDMDDYKAELVH 179
            CIG    K      +G++TL VDYG+RRVGLA+SVG+APR L +I + GN  +VA  ++ +A   +   +VVG+P++  G E  QA  TR F + L    P   I + +E F+++ A+ +L  S      VE+F+DSE+AV +L+  + +  D  AEL++
Sbjct:   10 CIGGSDGK----VHLGKKTLAVDYGLRRVGLALSVGIAPRRLNKIYNRGNLGEVARRISDVARREMVLQVVVGLPLNSKGDEGEQAAATRKFCEYLRIALPEPPIYLWDERFSTQTARNRLMSSKTYRNQVENFVDSEAAVAILEDFFENSGD-DAELLY 164          
BLAST of Gvermi12804.t1 vs. uniprot
Match: A0A7S3E813_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E813_9RHOD)

HSP 1 Score: 89.4 bits (220), Expect = 8.560e-19
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 0
Query:   20 CIGNQRSKRKIVARIGERTLGVDYGVRRVGLAISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSG 144
            CIG    K      +G++TL VDYG+RRVGLA+SVG+APR L +I + GN  +VA  ++ +A   +   +VVG+P++  G E  QA  TR F + L    P   I + +E F+++ A+ +L  S 
Sbjct:   10 CIGGSDGK----VHLGKKTLAVDYGLRRVGLALSVGIAPRRLNKIYNRGNLGEVARRISDVARREMVLQVVVGLPLNSKGDEGEQAAATRKFCEYLRIALPEPPIYLWDERFSTQTARNRLMSSS 130          
BLAST of Gvermi12804.t1 vs. uniprot
Match: M2X2I9_GALSU (DNA binding / hydrolase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X2I9_GALSU)

HSP 1 Score: 88.2 bits (217), Expect = 1.360e-17
Identity = 59/161 (36.65%), Postives = 88/161 (54.66%), Query Frame = 0
Query:   35 GERTLGVDYGVRRVGLAISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTR--NFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSGIVGRIVEDFIDSESAVMLLQRHYSDMDDYKAELVHVPKVVSVEQRRIEE 193
            G + +GVDYG+ RVG+A+SVG +PRPL  I H  N   V   ++ I S   AE IVVG+P+     E S   T +  NF Q +       ++ + +E +TS  A E+L + GI     ++ IDSE+AV+LL+R +      K+ L    K+V  +   IE+
Sbjct:   61 GRKAVGVDYGMSRVGVAVSVGFSPRPLTCIKHENNTDLVLEKLSEIVSSERAEIIVVGLPLSARV-ECSSGQTQKAMNFAQLVANRFSKQEVYLCDEKYTSIVANERLAERGISLVNSKELIDSEAAVVLLERFFGGWSSDKSGLYL--KLVKPQHENIEQ 218          
BLAST of Gvermi12804.t1 vs. uniprot
Match: A0A1X6P5R6_PORUM (YqgFc domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5R6_PORUM)

HSP 1 Score: 87.4 bits (215), Expect = 1.450e-17
Identity = 52/125 (41.60%), Postives = 68/125 (54.40%), Query Frame = 0
Query:   11 PAGLGPHIPCIGNQRSKRKIVARIGERTLGVDYGVRRVGLAISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKD 135
            P G G H P     R         G R LGVDYG+RR GLA  VG A RPL R+ H  +P   A  VA  A+      IVVG+P++  GRE  Q   TR FV +L+  APWA + + +E ++S++
Sbjct:   38 PRGRGQHSPXXXXSRRF------FGTRALGVDYGLRRTGLASGVGYASRPLPRLTHGRSPDGAAEAVATAAAG--VRLIVVGLPLNGAGREGDQCVATRRFVARLVARAPWAAVWLYDERWSSQE 154          
BLAST of Gvermi12804.t1 vs. uniprot
Match: M1VIN2_CYAM1 (YqgFc domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VIN2_CYAM1)

HSP 1 Score: 81.3 bits (199), Expect = 3.280e-15
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 0
Query:   31 VARIGERTLGVDYGVRRVGLAISVGVAPRPL--------------QRIDHFGN-----------PFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSGIVGRI-VEDFIDSESAVMLLQRHY 167
            +A+IG R+LG+DYG RRVG+A+SVG APRPL               ++   GN           P ++  DV  +A     + IVVG+P+   G E  Q+  TR F ++L + A    + + +E F++++A+  L  + I  R  +E  ID+ESA ++L+  Y
Sbjct:   27 IAQIGRRSLGIDYGFRRVGVAVSVGFAPRPLGCLPNAHRVATGPQNKVKIEGNRNRGQGRKSTVPDRLIEDVLDLALQEAVDQIVVGLPLHSDGLESDQSRETRVFAEKLAK-ATVLPVYLWDECFSTQEARAVLEANAIRSRRRIERQIDAESACVILREFY 188          
BLAST of Gvermi12804.t1 vs. uniprot
Match: A0A7S4D691_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D691_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 4.040e-15
Identity = 54/145 (37.24%), Postives = 85/145 (58.62%), Query Frame = 0
Query:   36 ERTLGVDYGVRRVGLAISVG-VAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTRNFVQQLI-RCAPWAKILVLNETFTSKDAKEQLRDSGIVGRIVEDFIDSESAVMLLQRHYSDMDDYKAELV 178
            ER LGVDYG +RVG+AIS G +APRP++ I + G+  +V  ++  +A      + VVG+P+   G E +Q+   RNF Q L    +P   + V NE F+S  A+  L      G I +  +D+ +A M+L+ ++S+ D + AEL+
Sbjct:   73 ERVLGVDYGTKRVGIAISAGGIAPRPVKIIQNSGDDSQVIREIKFMARAEQISSFVVGVPLQRDGAETNQSIINRNFSQTLADEVSPRVPVYVWNEAFSSVAAESLLLHKSR-GEI-DACLDAVAACMILEDYFSE-DGWGAELI 214          
BLAST of Gvermi12804.t1 vs. uniprot
Match: A0A7S3X7E5_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X7E5_EMIHU)

HSP 1 Score: 79.3 bits (194), Expect = 1.570e-14
Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = 0
Query:   35 GERTLGVDYGVRRVGLAISVGVAPRPLQRID-HFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSGIVGRIVEDFIDSESAVMLLQRHYSDMDDYKAELVHVP 181
            G RTLGVD+G+RR GLA+S G+AP P+  ID    N   VA  V R A    A  +V+GMP +  G E  QA  TR F + L R A    + + +E F+S +A   +R +   G      ID  +A ++L+  +   D   AEL+  P
Sbjct:   60 GTRTLGVDFGLRRTGLAVSAGIAPLPIGIIDDQSANLTAVAAQVVRAARSEGASQLVLGMPYNSSGGEGEQAVATRRFGELLAREAAPRPVYLWDERFSSAEAS--MRANAGDGAARGQSIDDVAAAIILEEFFEG-DFASAELIAPP 204          
BLAST of Gvermi12804.t1 vs. uniprot
Match: A0A7S2WGV2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGV2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.670e-14
Identity = 50/146 (34.25%), Postives = 83/146 (56.85%), Query Frame = 0
Query:   39 LGVDYGVRRVGLAISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGRELSQAHTTRNFVQ----QLIRCAPWAKILVLNETFTSKDAKEQLR--DSGIVGRIVEDFIDSESAVMLLQRHYSDMDDYKAELV 178
            LGVDYG RR+GLA+S G +PRP+  I H GN  ++ + +  IA    AE +VVG P++  G E  Q+  TRNF Q    ++ R +    + + +E ++S +A+  L+       GR++   +D+ESA  +L+  +++  D   E +
Sbjct:   60 LGVDYGTRRIGLAMSAGFSPRPVLTIKHTGNTTEMVHKILNIAKGEDAELLVVGNPLNQDGEENFQSDLTRNFTQVLASEVARRSLKLGVYMKDERYSSAEAEANLQFVSKKSKGRMLA-VLDAESACSILRAFFNEPVDSSVERI 204          
The following BLAST results are available for this feature:
BLAST of Gvermi12804.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3II35_9FLOR1.310e-7562.12Putative pre-16S rRNA nuclease n=1 Tax=Gracilariop... [more]
A0A7S1HCJ2_HEMAN1.710e-2641.61Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2ZDD4_9RHOD5.130e-2538.75Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E813_9RHOD8.560e-1939.20Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M2X2I9_GALSU1.360e-1736.65DNA binding / hydrolase n=1 Tax=Galdieria sulphura... [more]
A0A1X6P5R6_PORUM1.450e-1741.60YqgFc domain-containing protein n=1 Tax=Porphyra u... [more]
M1VIN2_CYAM13.280e-1533.74YqgFc domain-containing protein n=1 Tax=Cyanidiosc... [more]
A0A7S4D691_HETAK4.040e-1537.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3X7E5_EMIHU1.570e-1437.84Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S2WGV2_9STRA1.670e-1434.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 36..136
e-value: 0.0014
score: 27.9
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 35..181
e-value: 6.0E-24
score: 86.5
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 37..166
e-value: 7.8E-23
score: 81.4
IPR005227Putative pre-16S rRNA nucleasePANTHERPTHR33317POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 23..197
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 36..171
score: 14.831029
NoneNo IPR availablePANTHERPTHR33317:SF4POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 23..197
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 37..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1575520..1576185 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12804.t1Gvermi12804.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1575520..1576185 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12804.t1 ID=Gvermi12804.t1|Name=Gvermi12804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=222bp
MNTIAFFSACPAGLGPHIPCIGNQRSKRKIVARIGERTLGVDYGVRRVGL
AISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGR
ELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSGIVGRIV
EDFIDSESAVMLLQRHYSDMDDYKAELVHVPKVVSVEQRRIEERMTYAEW
KKLAMQRAAQHVQSGKKKKKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006641YqgF/RNaseH-like_dom
IPR037027YqgF/RNaseH-like_dom_sf
IPR005227YqgF
IPR012337RNaseH-like_sf