Gvermi12782.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12782.t1
Unique NameGvermi12782.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1507242..1508825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_4218
PFAMsFIST,FIST_C
Max annot lvl1117|Cyanobacteria
Evalue1e-55
EggNOG OGsCOG4398@1|root,COG4398@2|Bacteria,1G0TB@1117|Cyanobacteria,1HM6Z@1161|Nostocales
DescriptionFIST C domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12782Gvermi12782Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1507242..1508825 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12782.t1.stop1Gvermi12782.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1507242..1507244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12782.t1.CDS1Gvermi12782.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1507242..1508825 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12782.t1.exon1Gvermi12782.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1507242..1508825 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12782.t1.start1Gvermi12782.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1508823..1508825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12782.t1Gvermi12782.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1507242..1508825 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12782.t1 ID=Gvermi12782.t1|Name=Gvermi12782.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp
MFATFVPYAPVLTRLRATPNFPRCRPPRRLSCYPRRQLLLCAAQSNPETP
DVEAPQLVLSTAASSATTLNAALTEAASRALSKLGPGGPPNLALVFVSVR
YSLSNFGPSGRDSLDLIVPRLRALVPELKAVLGCTSDGVIGSGPLTDVVE
LQDVPSVSITLARLPNVKITPFHVMPDDLPNPDARQIEWRRLVSNPNDEN
NPPAFIVLSDPSFAEKGELDTFLSGVEFAYPGSCVVGSLASAAAAFSKGH
MFCTLPRDVLSPHSSSLRDSGLVGIALTGNIELDCLVSEGCRSIGPLFEV
RKVSSGTIREMELVGRPSTLMSAKSHLKSLISYATAQEKVLMQDHLHVGI
VIESVANTDADSESYLIRHVRGVDMEDGGIAVAHNVRPGQHIRFFLQERE
AAEKALDFNIQRYKRAELANSLVGYSNPPFGAIAFVDNSRGRTLFREPSM
ETRNLTEFATGVPIAGCFAGGQIGPCHSGAGDKSMPSVIHHAANLIALIR
RRSGISPAEPVDSPSTSAADFDEGKEN*
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spliced messenger RNA

>Gvermi12782.t1 ID=Gvermi12782.t1|Name=Gvermi12782.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_425:1507242..1508825- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCAACCTTCGTCCCATACGCACCCGTGCTCACAAGGTTGAGAGC
CACCCCAAACTTTCCCCGATGCCGCCCACCACGAAGACTCTCCTGTTATC
CACGTCGTCAGCTCCTATTGTGTGCAGCGCAGTCAAATCCAGAGACCCCC
GACGTGGAAGCACCGCAACTGGTTTTGTCCACCGCCGCATCTTCTGCCAC
AACTCTGAATGCCGCTCTTACCGAGGCTGCGTCCCGCGCGCTATCTAAGC
TGGGTCCGGGAGGGCCACCCAATCTTGCTCTTGTTTTCGTGTCGGTGCGC
TACAGTTTATCCAACTTCGGACCATCTGGACGCGACTCGCTCGACTTGAT
AGTGCCACGTCTTCGCGCCTTGGTGCCGGAGCTCAAGGCTGTTCTCGGAT
GCACCTCTGATGGAGTTATCGGAAGCGGCCCCTTGACCGATGTGGTTGAG
TTGCAAGACGTGCCGTCGGTTTCGATTACGTTGGCACGCCTTCCAAATGT
TAAGATTACCCCGTTCCATGTGATGCCCGATGATTTGCCGAACCCAGATG
CTAGACAAATCGAATGGAGGCGGCTTGTTTCAAATCCAAACGACGAGAAC
AATCCCCCTGCGTTCATTGTGCTCTCGGATCCGAGTTTTGCCGAAAAGGG
AGAGCTCGATACATTTTTGTCTGGTGTAGAATTTGCTTATCCTGGTAGTT
GCGTTGTTGGCTCCTTAGCCTCTGCGGCCGCAGCTTTTTCGAAGGGGCAT
ATGTTCTGTACGTTACCCAGGGACGTTCTTTCACCACATTCTTCCTCCCT
TAGAGACTCTGGTCTGGTAGGTATAGCATTGACGGGCAATATTGAGCTGG
ATTGTCTGGTTTCTGAGGGTTGCAGATCCATAGGACCTTTATTTGAGGTT
CGCAAGGTGTCCAGTGGAACTATTAGAGAGATGGAGTTGGTTGGGCGCCC
ATCCACTCTCATGTCAGCAAAGTCGCATTTGAAAAGTCTCATATCATACG
CAACAGCTCAAGAAAAGGTTTTGATGCAGGATCATCTACATGTGGGCATC
GTCATTGAATCTGTTGCCAATACGGATGCGGATTCCGAATCATATCTCAT
TCGACATGTTCGAGGAGTTGATATGGAAGACGGAGGCATTGCAGTCGCGC
ACAACGTTCGCCCGGGCCAACACATCCGCTTCTTTTTGCAAGAACGTGAA
GCCGCGGAAAAAGCTCTGGACTTTAATATTCAACGGTACAAGCGAGCGGA
ACTTGCGAATTCTTTAGTTGGCTACAGCAATCCCCCTTTCGGGGCAATTG
CGTTCGTTGACAACAGTCGAGGCCGAACTCTCTTCCGCGAACCGTCCATG
GAGACTAGAAATCTGACAGAGTTTGCAACCGGAGTGCCAATTGCTGGGTG
TTTTGCCGGTGGGCAAATTGGTCCATGCCATTCCGGCGCAGGAGATAAGA
GCATGCCTTCCGTTATTCATCATGCAGCCAATTTGATTGCTCTAATTCGA
AGAAGGAGTGGTATCTCACCCGCAGAGCCTGTCGACAGCCCCTCTACTTC
GGCGGCTGATTTTGATGAAGGCAAAGAGAACTAG
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protein sequence of Gvermi12782.t1

>Gvermi12782.t1 ID=Gvermi12782.t1|Name=Gvermi12782.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=528bp
MFATFVPYAPVLTRLRATPNFPRCRPPRRLSCYPRRQLLLCAAQSNPETP
DVEAPQLVLSTAASSATTLNAALTEAASRALSKLGPGGPPNLALVFVSVR
YSLSNFGPSGRDSLDLIVPRLRALVPELKAVLGCTSDGVIGSGPLTDVVE
LQDVPSVSITLARLPNVKITPFHVMPDDLPNPDARQIEWRRLVSNPNDEN
NPPAFIVLSDPSFAEKGELDTFLSGVEFAYPGSCVVGSLASAAAAFSKGH
MFCTLPRDVLSPHSSSLRDSGLVGIALTGNIELDCLVSEGCRSIGPLFEV
RKVSSGTIREMELVGRPSTLMSAKSHLKSLISYATAQEKVLMQDHLHVGI
VIESVANTDADSESYLIRHVRGVDMEDGGIAVAHNVRPGQHIRFFLQERE
AAEKALDFNIQRYKRAELANSLVGYSNPPFGAIAFVDNSRGRTLFREPSM
ETRNLTEFATGVPIAGCFAGGQIGPCHSGAGDKSMPSVIHHAANLIALIR
RRSGISPAEPVDSPSTSAADFDEGKEN*
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mRNA from alignment at ScGOVlb_425:1507242..1508825-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12782.t1 ID=Gvermi12782.t1|Name=Gvermi12782.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_425:1507242..1508825- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCGCAACCTTCGTCCCATACGCACCCGTGCTCACAAGGTTGAGAGC
CACCCCAAACTTTCCCCGATGCCGCCCACCACGAAGACTCTCCTGTTATC
CACGTCGTCAGCTCCTATTGTGTGCAGCGCAGTCAAATCCAGAGACCCCC
GACGTGGAAGCACCGCAACTGGTTTTGTCCACCGCCGCATCTTCTGCCAC
AACTCTGAATGCCGCTCTTACCGAGGCTGCGTCCCGCGCGCTATCTAAGC
TGGGTCCGGGAGGGCCACCCAATCTTGCTCTTGTTTTCGTGTCGGTGCGC
TACAGTTTATCCAACTTCGGACCATCTGGACGCGACTCGCTCGACTTGAT
AGTGCCACGTCTTCGCGCCTTGGTGCCGGAGCTCAAGGCTGTTCTCGGAT
GCACCTCTGATGGAGTTATCGGAAGCGGCCCCTTGACCGATGTGGTTGAG
TTGCAAGACGTGCCGTCGGTTTCGATTACGTTGGCACGCCTTCCAAATGT
TAAGATTACCCCGTTCCATGTGATGCCCGATGATTTGCCGAACCCAGATG
CTAGACAAATCGAATGGAGGCGGCTTGTTTCAAATCCAAACGACGAGAAC
AATCCCCCTGCGTTCATTGTGCTCTCGGATCCGAGTTTTGCCGAAAAGGG
AGAGCTCGATACATTTTTGTCTGGTGTAGAATTTGCTTATCCTGGTAGTT
GCGTTGTTGGCTCCTTAGCCTCTGCGGCCGCAGCTTTTTCGAAGGGGCAT
ATGTTCTGTACGTTACCCAGGGACGTTCTTTCACCACATTCTTCCTCCCT
TAGAGACTCTGGTCTGGTAGGTATAGCATTGACGGGCAATATTGAGCTGG
ATTGTCTGGTTTCTGAGGGTTGCAGATCCATAGGACCTTTATTTGAGGTT
CGCAAGGTGTCCAGTGGAACTATTAGAGAGATGGAGTTGGTTGGGCGCCC
ATCCACTCTCATGTCAGCAAAGTCGCATTTGAAAAGTCTCATATCATACG
CAACAGCTCAAGAAAAGGTTTTGATGCAGGATCATCTACATGTGGGCATC
GTCATTGAATCTGTTGCCAATACGGATGCGGATTCCGAATCATATCTCAT
TCGACATGTTCGAGGAGTTGATATGGAAGACGGAGGCATTGCAGTCGCGC
ACAACGTTCGCCCGGGCCAACACATCCGCTTCTTTTTGCAAGAACGTGAA
GCCGCGGAAAAAGCTCTGGACTTTAATATTCAACGGTACAAGCGAGCGGA
ACTTGCGAATTCTTTAGTTGGCTACAGCAATCCCCCTTTCGGGGCAATTG
CGTTCGTTGACAACAGTCGAGGCCGAACTCTCTTCCGCGAACCGTCCATG
GAGACTAGAAATCTGACAGAGTTTGCAACCGGAGTGCCAATTGCTGGGTG
TTTTGCCGGTGGGCAAATTGGTCCATGCCATTCCGGCGCAGGAGATAAGA
GCATGCCTTCCGTTATTCATCATGCAGCCAATTTGATTGCTCTAATTCGA
AGAAGGAGTGGTATCTCACCCGCAGAGCCTGTCGACAGCCCCTCTACTTC
GGCGGCTGATTTTGATGAAGGCAAAGAGAACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1507242..1508825-

>Gvermi12782.t1 ID=Gvermi12782.t1|Name=Gvermi12782.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1584bp|location=Sequence derived from alignment at ScGOVlb_425:1507242..1508825- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCGCAACCTTCGTCCCATACGCACCCGTGCTCACAAGGTTGAGAGC
CACCCCAAACTTTCCCCGATGCCGCCCACCACGAAGACTCTCCTGTTATC
CACGTCGTCAGCTCCTATTGTGTGCAGCGCAGTCAAATCCAGAGACCCCC
GACGTGGAAGCACCGCAACTGGTTTTGTCCACCGCCGCATCTTCTGCCAC
AACTCTGAATGCCGCTCTTACCGAGGCTGCGTCCCGCGCGCTATCTAAGC
TGGGTCCGGGAGGGCCACCCAATCTTGCTCTTGTTTTCGTGTCGGTGCGC
TACAGTTTATCCAACTTCGGACCATCTGGACGCGACTCGCTCGACTTGAT
AGTGCCACGTCTTCGCGCCTTGGTGCCGGAGCTCAAGGCTGTTCTCGGAT
GCACCTCTGATGGAGTTATCGGAAGCGGCCCCTTGACCGATGTGGTTGAG
TTGCAAGACGTGCCGTCGGTTTCGATTACGTTGGCACGCCTTCCAAATGT
TAAGATTACCCCGTTCCATGTGATGCCCGATGATTTGCCGAACCCAGATG
CTAGACAAATCGAATGGAGGCGGCTTGTTTCAAATCCAAACGACGAGAAC
AATCCCCCTGCGTTCATTGTGCTCTCGGATCCGAGTTTTGCCGAAAAGGG
AGAGCTCGATACATTTTTGTCTGGTGTAGAATTTGCTTATCCTGGTAGTT
GCGTTGTTGGCTCCTTAGCCTCTGCGGCCGCAGCTTTTTCGAAGGGGCAT
ATGTTCTGTACGTTACCCAGGGACGTTCTTTCACCACATTCTTCCTCCCT
TAGAGACTCTGGTCTGGTAGGTATAGCATTGACGGGCAATATTGAGCTGG
ATTGTCTGGTTTCTGAGGGTTGCAGATCCATAGGACCTTTATTTGAGGTT
CGCAAGGTGTCCAGTGGAACTATTAGAGAGATGGAGTTGGTTGGGCGCCC
ATCCACTCTCATGTCAGCAAAGTCGCATTTGAAAAGTCTCATATCATACG
CAACAGCTCAAGAAAAGGTTTTGATGCAGGATCATCTACATGTGGGCATC
GTCATTGAATCTGTTGCCAATACGGATGCGGATTCCGAATCATATCTCAT
TCGACATGTTCGAGGAGTTGATATGGAAGACGGAGGCATTGCAGTCGCGC
ACAACGTTCGCCCGGGCCAACACATCCGCTTCTTTTTGCAAGAACGTGAA
GCCGCGGAAAAAGCTCTGGACTTTAATATTCAACGGTACAAGCGAGCGGA
ACTTGCGAATTCTTTAGTTGGCTACAGCAATCCCCCTTTCGGGGCAATTG
CGTTCGTTGACAACAGTCGAGGCCGAACTCTCTTCCGCGAACCGTCCATG
GAGACTAGAAATCTGACAGAGTTTGCAACCGGAGTGCCAATTGCTGGGTG
TTTTGCCGGTGGGCAAATTGGTCCATGCCATTCCGGCGCAGGAGATAAGA
GCATGCCTTCCGTTATTCATCATGCAGCCAATTTGATTGCTCTAATTCGA
AGAAGGAGTGGTATCTCACCCGCAGAGCCTGTCGACAGCCCCTCTACTTC
GGCGGCTGATTTTGATGAAGGCAAAGAGAACTAG
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