Gvermi12719.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12719.t1
Unique NameGvermi12719.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1202013..1203373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12719Gvermi12719Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1202013..1203373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12719.t1Gvermi12719.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1202013..1203373 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12719.t1.stop1Gvermi12719.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1202013..1202015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12719.t1.CDS1Gvermi12719.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1202013..1202023 -
Gvermi12719.t1.CDS2Gvermi12719.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1202314..1203373 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12719.t1.exon1Gvermi12719.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1202013..1202023 -
Gvermi12719.t1.exon2Gvermi12719.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1202314..1203373 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12719.t1.intron1Gvermi12719.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1202024..1202313 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12719.t1.start1Gvermi12719.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1203371..1203373 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12719.t1 ID=Gvermi12719.t1|Name=Gvermi12719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=357bp
MQPLTLTVAIFALCVLPTHAAFTYQFVTPSPSPSYQAAFTVIQITHIPHE
APSPHSVSHLSFFGSLTPQFSVSPVPSALQSPVVITPYKEVPTRTPSPSP
SNRIAAFARMGSKTPSAFAALQSKTPAFSPLPTAFLDSAQTDPVSESSKT
PLPKIVKRLIVVPLRIQRTRILSAEPLPLHLNHSMEHTVTPSPSQRLVLQ
PPSFLSSSDAHTVGRSASKVHQAVISPTASNFQSSPSPSQLVSQAVNPMT
TALEMQNLKTEPSDLEGVSPQSPRPSGTAPTELIVPMNIRLEKYLHASPI
QMPKMSTPPSREPCPDGGSERVQLSTRRSLNMHEKSEPSIAPSTPDYCDS
VRRFDA*
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spliced messenger RNA

>Gvermi12719.t1 ID=Gvermi12719.t1|Name=Gvermi12719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at ScGOVlb_425:1202013..1203373- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCACTAACTCTAACTGTTGCCATCTTCGCTCTCTGCGTGCTTCC
CACTCATGCCGCCTTCACGTACCAATTCGTCACTCCATCCCCATCCCCTT
CCTATCAGGCCGCATTCACCGTCATCCAAATCACCCACATCCCTCATGAA
GCGCCTTCACCGCATTCAGTTTCCCATCTTTCTTTCTTTGGCTCCCTCAC
CCCGCAGTTCTCTGTTTCTCCAGTTCCGTCCGCTCTTCAGAGTCCGGTCG
TCATAACCCCTTACAAAGAGGTTCCGACACGCACGCCTTCACCGTCGCCG
TCCAATCGTATTGCCGCTTTTGCCCGCATGGGTTCAAAGACTCCTTCGGC
TTTTGCTGCGCTTCAGTCCAAAACTCCGGCCTTCTCTCCTCTCCCTACTG
CATTTTTGGATTCAGCTCAAACAGACCCCGTATCGGAATCGTCCAAAACA
CCTCTCCCAAAGATTGTCAAGCGTCTTATTGTCGTTCCACTCCGCATCCA
AAGAACTCGAATTCTATCTGCAGAGCCGCTCCCATTACATCTCAATCATT
CTATGGAACATACCGTAACGCCTTCTCCATCGCAAAGACTTGTCCTGCAA
CCGCCGTCTTTTCTTTCATCTTCAGACGCTCACACAGTTGGGCGTAGCGC
AAGCAAAGTACACCAAGCTGTTATTAGCCCCACCGCGTCCAATTTCCAAA
GCTCCCCGAGTCCGTCTCAGCTCGTTTCTCAGGCGGTTAACCCCATGACT
ACCGCGCTTGAAATGCAAAATCTTAAAACGGAGCCCTCAGATTTGGAAGG
TGTCAGCCCGCAGTCGCCTCGTCCGAGTGGCACAGCTCCAACCGAACTAA
TCGTTCCCATGAATATTCGACTGGAAAAGTATCTTCACGCTTCTCCAATT
CAAATGCCGAAAATGAGCACCCCTCCTTCTCGAGAGCCTTGTCCCGATGG
TGGTTCAGAACGTGTTCAGCTATCTACGCGTCGGTCGCTCAATATGCACG
AAAAATCTGAACCCTCAATAGCACCTTCTACTCCAGACTACTGTGACTCT
GTTCGACGTTTTGACGCCTGA
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protein sequence of Gvermi12719.t1

>Gvermi12719.t1 ID=Gvermi12719.t1|Name=Gvermi12719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=357bp
MQPLTLTVAIFALCVLPTHAAFTYQFVTPSPSPSYQAAFTVIQITHIPHE
APSPHSVSHLSFFGSLTPQFSVSPVPSALQSPVVITPYKEVPTRTPSPSP
SNRIAAFARMGSKTPSAFAALQSKTPAFSPLPTAFLDSAQTDPVSESSKT
PLPKIVKRLIVVPLRIQRTRILSAEPLPLHLNHSMEHTVTPSPSQRLVLQ
PPSFLSSSDAHTVGRSASKVHQAVISPTASNFQSSPSPSQLVSQAVNPMT
TALEMQNLKTEPSDLEGVSPQSPRPSGTAPTELIVPMNIRLEKYLHASPI
QMPKMSTPPSREPCPDGGSERVQLSTRRSLNMHEKSEPSIAPSTPDYCDS
VRRFDA*
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mRNA from alignment at ScGOVlb_425:1202013..1203373-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12719.t1 ID=Gvermi12719.t1|Name=Gvermi12719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1361bp|location=Sequence derived from alignment at ScGOVlb_425:1202013..1203373- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCACTAACTCTAACTGTTGCCATCTTCGCTCTCTGCGTGCTTCC
CACTCATGCCGCCTTCACGTACCAATTCGTCACTCCATCCCCATCCCCTT
CCTATCAGGCCGCATTCACCGTCATCCAAATCACCCACATCCCTCATGAA
GCGCCTTCACCGCATTCAGTTTCCCATCTTTCTTTCTTTGGCTCCCTCAC
CCCGCAGTTCTCTGTTTCTCCAGTTCCGTCCGCTCTTCAGAGTCCGGTCG
TCATAACCCCTTACAAAGAGGTTCCGACACGCACGCCTTCACCGTCGCCG
TCCAATCGTATTGCCGCTTTTGCCCGCATGGGTTCAAAGACTCCTTCGGC
TTTTGCTGCGCTTCAGTCCAAAACTCCGGCCTTCTCTCCTCTCCCTACTG
CATTTTTGGATTCAGCTCAAACAGACCCCGTATCGGAATCGTCCAAAACA
CCTCTCCCAAAGATTGTCAAGCGTCTTATTGTCGTTCCACTCCGCATCCA
AAGAACTCGAATTCTATCTGCAGAGCCGCTCCCATTACATCTCAATCATT
CTATGGAACATACCGTAACGCCTTCTCCATCGCAAAGACTTGTCCTGCAA
CCGCCGTCTTTTCTTTCATCTTCAGACGCTCACACAGTTGGGCGTAGCGC
AAGCAAAGTACACCAAGCTGTTATTAGCCCCACCGCGTCCAATTTCCAAA
GCTCCCCGAGTCCGTCTCAGCTCGTTTCTCAGGCGGTTAACCCCATGACT
ACCGCGCTTGAAATGCAAAATCTTAAAACGGAGCCCTCAGATTTGGAAGG
TGTCAGCCCGCAGTCGCCTCGTCCGAGTGGCACAGCTCCAACCGAACTAA
TCGTTCCCATGAATATTCGACTGGAAAAGTATCTTCACGCTTCTCCAATT
CAAATGCCGAAAATGAGCACCCCTCCTTCTCGAGAGCCTTGTCCCGATGG
TGGTTCAGAACGTGTTCAGCTATCTACGCGTCGGTCGCTCAATATGCACG
AAAAATCTGAACCCTCAATAGCACCTTCTACTCCAGACTACTGTGACTCT
GTTCGACGTTGTATGTGCGTCATTATCCCTACGAAGCTGTTGAGTCAATC
ACTCCTGTCGTTCTGCGATCAAATTTCCAACGTACTGTCTATATCAAACT
GTGAGGAGTCTCACCAAACACATGACTTTTTTGAGTTTTGGAAGACCAAA
CAGGGAGCTCAGGGCTTGGCGCTTGTCAATGAATGTGCTCCGGACATGTT
GAAGTTTGCTTAGAGTTTTAGCGTTCTTCTTTTAACTATTTCCAGATTGT
TTTCGGGAACTGCGTGGTCTTTCCTGAAAGTTTCCATCGCAATCATTCAG
TTGACGCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1202013..1203373-

>Gvermi12719.t1 ID=Gvermi12719.t1|Name=Gvermi12719.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1071bp|location=Sequence derived from alignment at ScGOVlb_425:1202013..1203373- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCACTAACTCTAACTGTTGCCATCTTCGCTCTCTGCGTGCTTCC
CACTCATGCCGCCTTCACGTACCAATTCGTCACTCCATCCCCATCCCCTT
CCTATCAGGCCGCATTCACCGTCATCCAAATCACCCACATCCCTCATGAA
GCGCCTTCACCGCATTCAGTTTCCCATCTTTCTTTCTTTGGCTCCCTCAC
CCCGCAGTTCTCTGTTTCTCCAGTTCCGTCCGCTCTTCAGAGTCCGGTCG
TCATAACCCCTTACAAAGAGGTTCCGACACGCACGCCTTCACCGTCGCCG
TCCAATCGTATTGCCGCTTTTGCCCGCATGGGTTCAAAGACTCCTTCGGC
TTTTGCTGCGCTTCAGTCCAAAACTCCGGCCTTCTCTCCTCTCCCTACTG
CATTTTTGGATTCAGCTCAAACAGACCCCGTATCGGAATCGTCCAAAACA
CCTCTCCCAAAGATTGTCAAGCGTCTTATTGTCGTTCCACTCCGCATCCA
AAGAACTCGAATTCTATCTGCAGAGCCGCTCCCATTACATCTCAATCATT
CTATGGAACATACCGTAACGCCTTCTCCATCGCAAAGACTTGTCCTGCAA
CCGCCGTCTTTTCTTTCATCTTCAGACGCTCACACAGTTGGGCGTAGCGC
AAGCAAAGTACACCAAGCTGTTATTAGCCCCACCGCGTCCAATTTCCAAA
GCTCCCCGAGTCCGTCTCAGCTCGTTTCTCAGGCGGTTAACCCCATGACT
ACCGCGCTTGAAATGCAAAATCTTAAAACGGAGCCCTCAGATTTGGAAGG
TGTCAGCCCGCAGTCGCCTCGTCCGAGTGGCACAGCTCCAACCGAACTAA
TCGTTCCCATGAATATTCGACTGGAAAAGTATCTTCACGCTTCTCCAATT
CAAATGCCGAAAATGAGCACCCCTCCTTCTCGAGAGCCTTGTCCCGATGG
TGGTTCAGAACGTGTTCAGCTATCTACGCGTCGGTCGCTCAATATGCACG
AAAAATCTGAACCCTCAATAGCACCTTCTACTCCAGACTACTGTGACTCT
GTTCGACGTTTTGACGCCTGA
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