Gvermi12776.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12776.t1
Unique NameGvermi12776.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1486794..1487658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR425CT
PFAMsSpoU_methylase
Max annot lvl2759|Eukaryota
KEGG koko:K03216
Evalue2.94e-40
EggNOG OGsCOG0219@1|root,2QQ5S@2759|Eukaryota
EC2.1.1.207
DescriptionSpoU rRNA Methylase family
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12776Gvermi12776Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1486794..1487658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12776.t1Gvermi12776.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1486794..1487658 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12776.t1.stop1Gvermi12776.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1486794..1486796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12776.t1.CDS1Gvermi12776.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1486794..1486895 -
Gvermi12776.t1.CDS2Gvermi12776.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1486996..1487658 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12776.t1.exon1Gvermi12776.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1486794..1486895 -
Gvermi12776.t1.exon2Gvermi12776.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1486996..1487658 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12776.t1.intron1Gvermi12776.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1486896..1486995 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12776.t1.start1Gvermi12776.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1487656..1487658 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12776.t1 ID=Gvermi12776.t1|Name=Gvermi12776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=255bp
MAGKMTSFILPGNCALRSRRGKNKQCNYQPGTGGSLSCFSHKKRPISIAN
CQYGNPVSASQSNAATDPEDGEKLLHIVFVHPQIHWNTGNIGRTCLGLGA
ALHLVGPIGFSLEERQIRRAGLDYWQHVDLHVYDDWLQFANGKMKDLGGT
RLFFTKFGEQCATDIEWPGEGKIVMIFGSEVDGFDGIRDWLDTQGQDERR
VSFPMVDDRFRSFNLSTTASMALWDAYKNVDKRGKKRTMLNTLQTDNSSV
VNHF*
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spliced messenger RNA

>Gvermi12776.t1 ID=Gvermi12776.t1|Name=Gvermi12776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp|location=Sequence derived from alignment at ScGOVlb_425:1486794..1487658- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGTAAAATGACATCATTTATTCTCCCGGGAAATTGTGCATTAAG
AAGCCGTCGCGGGAAGAATAAGCAGTGTAACTACCAACCCGGCACTGGAG
GATCTCTATCATGCTTCAGTCACAAGAAAAGACCTATTTCCATCGCCAAT
TGCCAGTATGGCAACCCTGTGTCCGCCTCACAGAGCAACGCAGCAACCGA
TCCTGAAGACGGGGAGAAACTGTTGCACATTGTTTTTGTGCATCCGCAAA
TACATTGGAACACAGGGAATATAGGACGTACATGTTTAGGATTAGGTGCA
GCTCTTCACCTGGTGGGACCGATCGGTTTCTCATTGGAAGAAAGGCAAAT
TCGTCGAGCGGGTCTGGACTATTGGCAACACGTTGACCTACATGTATACG
ACGACTGGCTGCAGTTTGCAAATGGAAAGATGAAAGATCTGGGGGGAACC
CGATTGTTCTTCACAAAATTTGGAGAACAATGTGCCACAGATATTGAATG
GCCTGGGGAAGGAAAGATTGTCATGATATTCGGTAGTGAGGTTGACGGTT
TTGATGGAATTCGCGATTGGCTTGACACCCAGGGCCAGGATGAACGACGC
GTCTCGTTTCCCATGGTCGACGACCGGTTTCGTAGTTTCAATCTCAGTAC
GACAGCAAGTATGGCTTTATGGGATGCCTACAAGAACGTGGATAAACGAG
GTAAGAAACGAACGATGTTGAACACCTTGCAAACCGATAATTCTTCTGTC
GTGAACCATTTCTGA
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protein sequence of Gvermi12776.t1

>Gvermi12776.t1 ID=Gvermi12776.t1|Name=Gvermi12776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=255bp
MAGKMTSFILPGNCALRSRRGKNKQCNYQPGTGGSLSCFSHKKRPISIAN
CQYGNPVSASQSNAATDPEDGEKLLHIVFVHPQIHWNTGNIGRTCLGLGA
ALHLVGPIGFSLEERQIRRAGLDYWQHVDLHVYDDWLQFANGKMKDLGGT
RLFFTKFGEQCATDIEWPGEGKIVMIFGSEVDGFDGIRDWLDTQGQDERR
VSFPMVDDRFRSFNLSTTASMALWDAYKNVDKRGKKRTMLNTLQTDNSSV
VNHF*
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mRNA from alignment at ScGOVlb_425:1486794..1487658-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12776.t1 ID=Gvermi12776.t1|Name=Gvermi12776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=865bp|location=Sequence derived from alignment at ScGOVlb_425:1486794..1487658- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGGTAAAATGACATCATTTATTCTCCCGGGAAATTGTGCATTAAG
AAGCCGTCGCGGGAAGAATAAGCAGTGTAACTACCAACCCGGCACTGGAG
GATCTCTATCATGCTTCAGTCACAAGAAAAGACCTATTTCCATCGCCAAT
TGCCAGTATGGCAACCCTGTGTCCGCCTCACAGAGCAACGCAGCAACCGA
TCCTGAAGACGGGGAGAAACTGTTGCACATTGTTTTTGTGCATCCGCAAA
TACATTGGAACACAGGGAATATAGGACGTACATGTTTAGGATTAGGTGCA
GCTCTTCACCTGGTGGGACCGATCGGTTTCTCATTGGAAGAAAGGCAAAT
TCGTCGAGCGGGTCTGGACTATTGGCAACACGTTGACCTACATGTATACG
ACGACTGGCTGCAGTTTGCAAATGGAAAGATGAAAGATCTGGGGGGAACC
CGATTGTTCTTCACAAAATTTGGAGAACAATGTGCCACAGATATTGAATG
GCCTGGGGAAGGAAAGATTGTCATGATATTCGGTAGTGAGGTTGACGGTT
TTGATGGAATTCGCGATTGGCTTGACACCCAGGGCCAGGATGAACGACGC
GTCTCGTTTCCCATGGTCGACGACCGGTTTCGTAGTTTCAATCTCAGTAC
GACAGCAAGTATGGTAAGTACAGCTTGTTCTTTATGTGTGTGAACCATGT
TACTTTTTGTGTTGGGTTGCAGTACAGCTTTGCTGACCGATTATCTGTTT
TGAACTGCTGAAGGCTTTATGGGATGCCTACAAGAACGTGGATAAACGAG
GTAAGAAACGAACGATGTTGAACACCTTGCAAACCGATAATTCTTCTGTC
GTGAACCATTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1486794..1487658-

>Gvermi12776.t1 ID=Gvermi12776.t1|Name=Gvermi12776.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=765bp|location=Sequence derived from alignment at ScGOVlb_425:1486794..1487658- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGGTAAAATGACATCATTTATTCTCCCGGGAAATTGTGCATTAAG
AAGCCGTCGCGGGAAGAATAAGCAGTGTAACTACCAACCCGGCACTGGAG
GATCTCTATCATGCTTCAGTCACAAGAAAAGACCTATTTCCATCGCCAAT
TGCCAGTATGGCAACCCTGTGTCCGCCTCACAGAGCAACGCAGCAACCGA
TCCTGAAGACGGGGAGAAACTGTTGCACATTGTTTTTGTGCATCCGCAAA
TACATTGGAACACAGGGAATATAGGACGTACATGTTTAGGATTAGGTGCA
GCTCTTCACCTGGTGGGACCGATCGGTTTCTCATTGGAAGAAAGGCAAAT
TCGTCGAGCGGGTCTGGACTATTGGCAACACGTTGACCTACATGTATACG
ACGACTGGCTGCAGTTTGCAAATGGAAAGATGAAAGATCTGGGGGGAACC
CGATTGTTCTTCACAAAATTTGGAGAACAATGTGCCACAGATATTGAATG
GCCTGGGGAAGGAAAGATTGTCATGATATTCGGTAGTGAGGTTGACGGTT
TTGATGGAATTCGCGATTGGCTTGACACCCAGGGCCAGGATGAACGACGC
GTCTCGTTTCCCATGGTCGACGACCGGTTTCGTAGTTTCAATCTCAGTAC
GACAGCAAGTATGGCTTTATGGGATGCCTACAAGAACGTGGATAAACGAG
GTAAGAAACGAACGATGTTGAACACCTTGCAAACCGATAATTCTTCTGTC
GTGAACCATTTCTGA
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