Gvermi12699.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12699.t1
Unique NameGvermi12699.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1059080..1060411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog864702.OsccyDRAFT_1985
Max annot lvl1117|Cyanobacteria
Evalue9.92e-75
EggNOG OGsCOG5360@1|root,COG5360@2|Bacteria,1G0BX@1117|Cyanobacteria,1H8D2@1150|Oscillatoriales
DescriptionHeparinase II/III-like protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12699Gvermi12699Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1059080..1060411 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12699.t1.stop1Gvermi12699.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1059080..1059082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12699.t1.CDS1Gvermi12699.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1059080..1060411 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12699.t1.exon1Gvermi12699.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1059080..1060411 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12699.t1.start1Gvermi12699.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1060409..1060411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12699.t1Gvermi12699.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1059080..1060411 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12699.t1 ID=Gvermi12699.t1|Name=Gvermi12699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp
LRATFTDAFSNSSNLQDVPEPVLRAVEASRQLRQTVPDIAARSGLSVADA
ATYAAKLAALTRAPIDVTDSGDLAYRFPSNVRTLLRTASLRAKLRMAWQT
VFPPLYSAARLAFGALLIVSIVVTFVAIAVLASASSSSDDDRRSSRSGGF
MPVRFFAPDIFDIIWYSRATRSYRRNKSPDEMSFLEAVYSFVFGDGDPNE
DVESRRYRMIAAIIRSNRGAVTAEQLAPYLDPTFTDGSMVDESYILPVLQ
RFNGHPEVTEDGDIIYVFPDFLRSGASSVEFAGTVSPLKEQLLSLTRATP
VQTALAMALGAVNVLGVLTLGAKLATVVAVTPDAAAFISFIKSIYPALAT
YATSFVVVPLFRWLRQMRVNAGIQKRNAARQYAAERLVRPNSTTRRKMRA
AEQFAIKEGSSIGNVIYSSDRDLLDQATVQRDYTDDFDRRLNG*
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spliced messenger RNA

>Gvermi12699.t1 ID=Gvermi12699.t1|Name=Gvermi12699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at ScGOVlb_425:1059080..1060411- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCGCCACCTTCACCGATGCCTTTTCCAACTCCTCCAACCTTCAGGA
CGTGCCCGAGCCAGTGCTGCGAGCCGTGGAGGCCTCGCGCCAGTTGCGCC
AGACCGTGCCGGACATTGCCGCCCGCTCCGGACTCTCTGTCGCCGACGCC
GCCACCTACGCCGCAAAGCTCGCCGCTCTCACGCGCGCCCCCATTGACGT
CACCGACTCGGGCGACCTGGCCTATCGCTTCCCGTCAAACGTGCGCACTC
TGCTGCGCACCGCCTCGCTCCGCGCCAAACTGCGCATGGCCTGGCAAACC
GTTTTCCCACCCTTGTACTCGGCCGCTCGCCTTGCGTTCGGCGCCTTGTT
AATTGTCAGCATTGTCGTCACCTTTGTGGCGATCGCTGTTCTGGCGAGCG
CTTCGAGTTCCTCTGACGACGACCGGCGTTCTTCCCGCTCCGGAGGCTTT
ATGCCGGTGCGCTTCTTCGCTCCGGATATTTTTGATATCATCTGGTACTC
GCGCGCAACGCGCAGTTATCGGCGCAACAAGTCTCCGGATGAAATGTCCT
TCTTGGAGGCTGTCTACTCATTTGTATTTGGCGACGGTGATCCGAACGAA
GACGTAGAATCCCGCAGGTACCGTATGATTGCAGCTATTATTCGTTCCAA
CAGGGGCGCTGTAACAGCCGAGCAGCTAGCACCTTACCTCGACCCGACGT
TTACCGATGGCAGCATGGTTGATGAAAGCTACATTCTACCTGTGCTTCAG
CGCTTTAACGGCCATCCGGAAGTCACGGAAGATGGCGATATCATATACGT
GTTTCCAGACTTTTTGAGAAGTGGAGCCTCTAGTGTGGAGTTTGCTGGAA
CCGTGTCTCCTTTGAAAGAACAACTGTTGTCGCTCACTCGTGCTACCCCC
GTTCAAACTGCACTCGCGATGGCCTTGGGTGCTGTAAATGTTCTCGGCGT
GCTCACTCTTGGCGCAAAGCTTGCAACTGTTGTGGCTGTCACTCCTGACG
CCGCCGCCTTCATCTCCTTCATCAAATCCATCTACCCGGCGTTGGCCACA
TACGCAACGTCGTTTGTCGTCGTGCCCCTCTTCCGTTGGTTGCGTCAGAT
GCGAGTCAATGCAGGCATTCAGAAGAGGAATGCCGCTCGTCAGTATGCTG
CAGAGAGACTAGTTCGCCCAAATTCGACAACCAGACGAAAGATGCGGGCG
GCAGAGCAATTTGCTATCAAAGAAGGCTCCTCAATTGGCAATGTCATCTA
TTCAAGCGACAGAGACCTTTTGGATCAGGCCACAGTTCAAAGAGACTATA
CGGACGATTTTGACCGGAGGCTTAATGGATGA
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protein sequence of Gvermi12699.t1

>Gvermi12699.t1 ID=Gvermi12699.t1|Name=Gvermi12699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=444bp
LRATFTDAFSNSSNLQDVPEPVLRAVEASRQLRQTVPDIAARSGLSVADA
ATYAAKLAALTRAPIDVTDSGDLAYRFPSNVRTLLRTASLRAKLRMAWQT
VFPPLYSAARLAFGALLIVSIVVTFVAIAVLASASSSSDDDRRSSRSGGF
MPVRFFAPDIFDIIWYSRATRSYRRNKSPDEMSFLEAVYSFVFGDGDPNE
DVESRRYRMIAAIIRSNRGAVTAEQLAPYLDPTFTDGSMVDESYILPVLQ
RFNGHPEVTEDGDIIYVFPDFLRSGASSVEFAGTVSPLKEQLLSLTRATP
VQTALAMALGAVNVLGVLTLGAKLATVVAVTPDAAAFISFIKSIYPALAT
YATSFVVVPLFRWLRQMRVNAGIQKRNAARQYAAERLVRPNSTTRRKMRA
AEQFAIKEGSSIGNVIYSSDRDLLDQATVQRDYTDDFDRRLNG*
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mRNA from alignment at ScGOVlb_425:1059080..1060411-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12699.t1 ID=Gvermi12699.t1|Name=Gvermi12699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at ScGOVlb_425:1059080..1060411- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCGCCACCTTCACCGATGCCTTTTCCAACTCCTCCAACCTTCAGGA
CGTGCCCGAGCCAGTGCTGCGAGCCGTGGAGGCCTCGCGCCAGTTGCGCC
AGACCGTGCCGGACATTGCCGCCCGCTCCGGACTCTCTGTCGCCGACGCC
GCCACCTACGCCGCAAAGCTCGCCGCTCTCACGCGCGCCCCCATTGACGT
CACCGACTCGGGCGACCTGGCCTATCGCTTCCCGTCAAACGTGCGCACTC
TGCTGCGCACCGCCTCGCTCCGCGCCAAACTGCGCATGGCCTGGCAAACC
GTTTTCCCACCCTTGTACTCGGCCGCTCGCCTTGCGTTCGGCGCCTTGTT
AATTGTCAGCATTGTCGTCACCTTTGTGGCGATCGCTGTTCTGGCGAGCG
CTTCGAGTTCCTCTGACGACGACCGGCGTTCTTCCCGCTCCGGAGGCTTT
ATGCCGGTGCGCTTCTTCGCTCCGGATATTTTTGATATCATCTGGTACTC
GCGCGCAACGCGCAGTTATCGGCGCAACAAGTCTCCGGATGAAATGTCCT
TCTTGGAGGCTGTCTACTCATTTGTATTTGGCGACGGTGATCCGAACGAA
GACGTAGAATCCCGCAGGTACCGTATGATTGCAGCTATTATTCGTTCCAA
CAGGGGCGCTGTAACAGCCGAGCAGCTAGCACCTTACCTCGACCCGACGT
TTACCGATGGCAGCATGGTTGATGAAAGCTACATTCTACCTGTGCTTCAG
CGCTTTAACGGCCATCCGGAAGTCACGGAAGATGGCGATATCATATACGT
GTTTCCAGACTTTTTGAGAAGTGGAGCCTCTAGTGTGGAGTTTGCTGGAA
CCGTGTCTCCTTTGAAAGAACAACTGTTGTCGCTCACTCGTGCTACCCCC
GTTCAAACTGCACTCGCGATGGCCTTGGGTGCTGTAAATGTTCTCGGCGT
GCTCACTCTTGGCGCAAAGCTTGCAACTGTTGTGGCTGTCACTCCTGACG
CCGCCGCCTTCATCTCCTTCATCAAATCCATCTACCCGGCGTTGGCCACA
TACGCAACGTCGTTTGTCGTCGTGCCCCTCTTCCGTTGGTTGCGTCAGAT
GCGAGTCAATGCAGGCATTCAGAAGAGGAATGCCGCTCGTCAGTATGCTG
CAGAGAGACTAGTTCGCCCAAATTCGACAACCAGACGAAAGATGCGGGCG
GCAGAGCAATTTGCTATCAAAGAAGGCTCCTCAATTGGCAATGTCATCTA
TTCAAGCGACAGAGACCTTTTGGATCAGGCCACAGTTCAAAGAGACTATA
CGGACGATTTTGACCGGAGGCTTAATGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1059080..1060411-

>Gvermi12699.t1 ID=Gvermi12699.t1|Name=Gvermi12699.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1332bp|location=Sequence derived from alignment at ScGOVlb_425:1059080..1060411- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCGCCACCTTCACCGATGCCTTTTCCAACTCCTCCAACCTTCAGGA
CGTGCCCGAGCCAGTGCTGCGAGCCGTGGAGGCCTCGCGCCAGTTGCGCC
AGACCGTGCCGGACATTGCCGCCCGCTCCGGACTCTCTGTCGCCGACGCC
GCCACCTACGCCGCAAAGCTCGCCGCTCTCACGCGCGCCCCCATTGACGT
CACCGACTCGGGCGACCTGGCCTATCGCTTCCCGTCAAACGTGCGCACTC
TGCTGCGCACCGCCTCGCTCCGCGCCAAACTGCGCATGGCCTGGCAAACC
GTTTTCCCACCCTTGTACTCGGCCGCTCGCCTTGCGTTCGGCGCCTTGTT
AATTGTCAGCATTGTCGTCACCTTTGTGGCGATCGCTGTTCTGGCGAGCG
CTTCGAGTTCCTCTGACGACGACCGGCGTTCTTCCCGCTCCGGAGGCTTT
ATGCCGGTGCGCTTCTTCGCTCCGGATATTTTTGATATCATCTGGTACTC
GCGCGCAACGCGCAGTTATCGGCGCAACAAGTCTCCGGATGAAATGTCCT
TCTTGGAGGCTGTCTACTCATTTGTATTTGGCGACGGTGATCCGAACGAA
GACGTAGAATCCCGCAGGTACCGTATGATTGCAGCTATTATTCGTTCCAA
CAGGGGCGCTGTAACAGCCGAGCAGCTAGCACCTTACCTCGACCCGACGT
TTACCGATGGCAGCATGGTTGATGAAAGCTACATTCTACCTGTGCTTCAG
CGCTTTAACGGCCATCCGGAAGTCACGGAAGATGGCGATATCATATACGT
GTTTCCAGACTTTTTGAGAAGTGGAGCCTCTAGTGTGGAGTTTGCTGGAA
CCGTGTCTCCTTTGAAAGAACAACTGTTGTCGCTCACTCGTGCTACCCCC
GTTCAAACTGCACTCGCGATGGCCTTGGGTGCTGTAAATGTTCTCGGCGT
GCTCACTCTTGGCGCAAAGCTTGCAACTGTTGTGGCTGTCACTCCTGACG
CCGCCGCCTTCATCTCCTTCATCAAATCCATCTACCCGGCGTTGGCCACA
TACGCAACGTCGTTTGTCGTCGTGCCCCTCTTCCGTTGGTTGCGTCAGAT
GCGAGTCAATGCAGGCATTCAGAAGAGGAATGCCGCTCGTCAGTATGCTG
CAGAGAGACTAGTTCGCCCAAATTCGACAACCAGACGAAAGATGCGGGCG
GCAGAGCAATTTGCTATCAAAGAAGGCTCCTCAATTGGCAATGTCATCTA
TTCAAGCGACAGAGACCTTTTGGATCAGGCCACAGTTCAAAGAGACTATA
CGGACGATTTTGACCGGAGGCTTAATGGATGA
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